BLASTX 7.6.2
Query= RU24443 /QuerySize=598
(597 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa] 161 5e-038
gi|15232924|ref|NP_186903.1| RAD23-3 (PUTATIVE DNA REPAIR PROTEI... 148 3e-034
gi|42572233|ref|NP_974211.1| RAD23-3 (PUTATIVE DNA REPAIR PROTEI... 148 3e-034
gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa (jap... 148 4e-034
gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_021661 [Ory... 148 4e-034
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 161 bits (405), Expect = 5e-038
Identities = 87/133 (65%), Positives = 98/133 (73%), Gaps = 11/133 (8%)
Frame = +2
Query: 158 MKVFVKTLKGTNFEIEVEPQQLVADVKQIIETAQGADVYPASKQMLIHQGKVLKDATTLE 337
MK+FVKTLKGT+FEIEV+P+ VADVK+ IET Q DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQSPDVYPAAQQMLIHQGKVLKDETTME 60
Query: 338 ENQVAENSFIVIMLSKASP--SGSSSTQGAPKSQAQPASTPST---------TTTPAAAP 484
EN+VAENSFIVIMLSK+ P SGSS+ AP QA P ST TPA AP
Sbjct: 61 ENKVAENSFIVIMLSKSKPASSGSSTASSAPTFQAPPVPPASTQPLIPVATPQPTPATAP 120
Query: 485 APVPAPAPAPVVA 523
AP PAPAPAP A
Sbjct: 121 APAPAPAPAPAPA 133
>gi|15232924|ref|NP_186903.1| RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3);
damaged DNA binding [Arabidopsis thaliana]
Length = 419
Score = 148 bits (373), Expect = 3e-034
Identities = 80/141 (56%), Positives = 101/141 (71%), Gaps = 12/141 (8%)
Frame = +2
Query: 158 MKVFVKTLKGTNFEIEVEPQQLVADVKQIIETAQGADVYPASKQMLIHQGKVLKDATTLE 337
MK+FVKTLKGT+FEIEV+P+ V DVK+ IE+ QGADVYPA+KQMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 338 ENQVAENSFIVIMLSKASP---------SGSSSTQGAPKSQAQPASTPSTTTTPAA--AP 484
EN+VAENSFIVIM++K+ P +G+S + P S +QP+ +P T + +A AP
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 485 APVPAPAPAPVVAQSQPVVET 547
AP P PAP + PV T
Sbjct: 121 APTRPPPPAPTPTPA-PVAAT 140
>gi|42572233|ref|NP_974211.1| RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)
[Arabidopsis thaliana]
Length = 299
Score = 148 bits (373), Expect = 3e-034
Identities = 80/141 (56%), Positives = 101/141 (71%), Gaps = 12/141 (8%)
Frame = +2
Query: 158 MKVFVKTLKGTNFEIEVEPQQLVADVKQIIETAQGADVYPASKQMLIHQGKVLKDATTLE 337
MK+FVKTLKGT+FEIEV+P+ V DVK+ IE+ QGADVYPA+KQMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 338 ENQVAENSFIVIMLSKASP---------SGSSSTQGAPKSQAQPASTPSTTTTPAA--AP 484
EN+VAENSFIVIM++K+ P +G+S + P S +QP+ +P T + +A AP
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 485 APVPAPAPAPVVAQSQPVVET 547
AP P PAP + PV T
Sbjct: 121 APTRPPPPAPTPTPA-PVAAT 140
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa (japonica
cultivar-group)]
Length = 413
Score = 148 bits (371), Expect = 4e-034
Identities = 80/135 (59%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +2
Query: 158 MKVFVKTLKGTNFEIEVEPQQLVADVKQIIETAQGADVYPASKQMLIHQGKVLKDATTLE 337
MK+FVKTLKGTNFEIE P+ VA+VK+IIE+ QG +VYPA +QMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 338 ENQVAENSFIVIMLS--KASPSGSSSTQGAPKSQAQPASTPSTTTTPAAAPAPVPAPAPA 511
N+VAENSF+VIMLS KAS SG+S+ AP SQ+QPA+ ++ APV P PA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 512 PVVAQSQPVVETAAS 556
P AQ T A+
Sbjct: 121 PPSAQPPVASATPAA 135
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_021661 [Oryza sativa
(indica cultivar-group)]
Length = 413
Score = 148 bits (371), Expect = 4e-034
Identities = 80/135 (59%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +2
Query: 158 MKVFVKTLKGTNFEIEVEPQQLVADVKQIIETAQGADVYPASKQMLIHQGKVLKDATTLE 337
MK+FVKTLKGTNFEIE P+ VA+VK+IIE+ QG +VYPA +QMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 338 ENQVAENSFIVIMLS--KASPSGSSSTQGAPKSQAQPASTPSTTTTPAAAPAPVPAPAPA 511
N+VAENSF+VIMLS KAS SG+S+ AP SQ+QPA+ ++ APV P PA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 512 PVVAQSQPVVETAAS 556
P AQ T A+
Sbjct: 121 PPSAQPPVASATPAA 135
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,304,915,632
Number of Sequences: 7387702
Number of Extensions: 544304915632
Number of Successful Extensions: 309755150
Number of sequences better than 0.0: 0
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