BLASTX 7.6.2
Query= RU25531 /QuerySize=408
(407 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|157346278|emb|CAO15975.1| unnamed protein product [Vitis vini... 245 1e-063
gi|89111930|ref|NP_001034752.1| hypothetical protein LOC664621 [... 242 5e-063
gi|159476640|ref|XP_001696419.1| U2 snRNP auxiliary factor, smal... 184 1e-045
gi|161899399|ref|XP_001712926.1| mRNA splicing factor U2 associa... 156 4e-037
gi|193875780|gb|ACF24526.1| mRNA splicing factor U2 associated f... 152 7e-036
>gi|157346278|emb|CAO15975.1| unnamed protein product [Vitis vinifera]
Length = 317
Score = 245 bits (623), Expect = 1e-063
Identities = 117/128 (91%), Positives = 123/128 (96%), Gaps = 1/128 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLHTKPSISPTLLLSNMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVT-PG 61
Query: 208 VDPQGQALDPRKIQDNFEDFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VDPQGQ LDPRKIQ++FEDFYEDLFEELSKYG+IESLNICDNLADHMVGNVYVQFREEEH
Sbjct: 62 VDPQGQPLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121
Query: 28 AAAALQNL 5
AA AL+NL
Sbjct: 122 AANALRNL 129
>gi|89111930|ref|NP_001034752.1| hypothetical protein LOC664621 [Mus musculus]
Length = 310
Score = 242 bits (617), Expect = 5e-063
Identities = 115/129 (89%), Positives = 122/129 (94%), Gaps = 1/129 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLHTKPSISPTLLL+NMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLANMYQRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNFEDFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VDPQGQ LDPRKIQ +FEDFYEDLFEELSKYG+IESLNICDNLADHMVGNVYVQFREEEH
Sbjct: 62 VDPQGQPLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEH 121
Query: 28 AAAALQNLT 2
A AL+NL+
Sbjct: 122 AGEALRNLS 130
>gi|159476640|ref|XP_001696419.1| U2 snRNP auxiliary factor, small subunit
[Chlamydomonas reinhardtii]
Length = 273
Score = 184 bits (467), Expect = 1e-045
Identities = 86/130 (66%), Positives = 106/130 (81%), Gaps = 4/130 (3%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH +P+ISPT+L++NMYQ P L N
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNP--LLNAP 60
Query: 208 VDPQGQAL--DPRKIQDNFEDFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREE 35
+ P G + DPR Q++FEDFYED+FEEL+ +G++E+LN+CDN ADHMVGNVY +FR+E
Sbjct: 61 LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFADHMVGNVYAKFRDE 120
Query: 34 EHAAAALQNL 5
+ AA AL L
Sbjct: 121 DAAARALTAL 130
>gi|161899399|ref|XP_001712926.1| mRNA splicing factor U2 associated factor
[Bigelowiella natans]
Length = 193
Score = 156 bits (394), Expect = 4e-037
Identities = 71/129 (55%), Positives = 96/129 (74%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
+HLASI GTEKDRVNCPFYFKI CRHG KCSRLH KP+ S T+L N+YQ P + G
Sbjct: 3 DHLASIHGTEKDRVNCPFYFKIGACRHGSKCSRLHNKPTSSQTILFVNLYQNPALKAPVG 62
Query: 208 VDPQGQALDPRKIQDNFEDFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
D + +P K Q FE FYEDLF+E+S +G I+++ +CDNL+DH++GNVYV+F +++
Sbjct: 63 KDGLPKPKNPYKSQKQFEFFYEDLFQEMSFFGDIDNIYVCDNLSDHLIGNVYVKFLKDKS 122
Query: 28 AAAALQNLT 2
A AL++++
Sbjct: 123 AMKALKSVS 131
>gi|193875780|gb|ACF24526.1| mRNA splicing factor U2 associated factor
[Gymnochlora stellata]
Length = 182
Score = 152 bits (383), Expect = 7e-036
Identities = 66/118 (55%), Positives = 91/118 (77%)
Frame = -2
Query: 358 KDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPGVDPQGQALDP 179
KDRVNCPFYFKI CRHGDKCSR+H +P+ S TLL NMYQ P + G D + L+P
Sbjct: 1 KDRVNCPFYFKIGACRHGDKCSRMHNRPATSQTLLFINMYQNPALTAPLGKDGLPKPLNP 60
Query: 178 RKIQDNFEDFYEDLFEELSKYGQIESLNICDNLADHMVGNVYVQFREEEHAAAALQNL 5
+Q +F+ FY+D++EEL+ +G IE+LN+CDNL+DHM+GNVYV++R+E+ A AL+++
Sbjct: 61 YNLQSHFQKFYKDIYEELNFFGDIENLNVCDNLSDHMIGNVYVKYRQEKSAMKALKSI 118
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,304,915,632
Number of Sequences: 7387702
Number of Extensions: 544304915632
Number of Successful Extensions: 309755150
Number of sequences better than 0.0: 0
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