BLASTX 7.6.2
Query= RU43323 /QuerySize=291
(290 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|18398841|ref|NP_564424.1| PHD finger family protein [Arabidop... 121 2e-026
gi|115441391|ref|NP_001044975.1| Os01g0877500 [Oryza sativa (jap... 111 2e-023
gi|125528578|gb|EAY76692.1| hypothetical protein OsI_004539 [Ory... 111 2e-023
gi|157359175|emb|CAO67097.1| unnamed protein product [Vitis vini... 109 6e-023
gi|159163271|pdb|1WEE|A Chain A, Solution Structure Of Phd Domai... 102 1e-020
>gi|18398841|ref|NP_564424.1| PHD finger family protein [Arabidopsis thaliana]
Length = 697
Score = 121 bits (302), Expect = 2e-026
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Frame = +1
Query: 1 HGLNRFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVC 180
HGL R+RMERG+++W VDC CGTKDDDGERMLACD CGVW HTRC GI+ +D +P+KF+C
Sbjct: 588 HGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLC 647
Query: 181 LRCMSSYREKNQSTCDSAKEANCVPLTNTTCRSKAA 288
RC+ Y +K + + + ++ VP CR ++A
Sbjct: 648 FRCIELYSKKPKQS-KKERGSSQVPKAGFVCRGESA 682
>gi|115441391|ref|NP_001044975.1| Os01g0877500 [Oryza sativa (japonica
cultivar-group)]
Length = 716
Score = 111 bits (276), Expect = 2e-023
Identities = 45/68 (66%), Positives = 54/68 (79%)
Frame = +1
Query: 13 RFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCM 192
+FRMERG+E+W VDC CG KDDDGERMLACD CGVWQHTRC+GI D++P KF+C +C
Sbjct: 609 QFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPEKFICRKCA 668
Query: 193 SSYREKNQ 216
S R K +
Sbjct: 669 SPRRGKGR 676
>gi|125528578|gb|EAY76692.1| hypothetical protein OsI_004539 [Oryza sativa
(indica cultivar-group)]
Length = 716
Score = 111 bits (276), Expect = 2e-023
Identities = 45/68 (66%), Positives = 54/68 (79%)
Frame = +1
Query: 13 RFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCM 192
+FRMERG+E+W VDC CG KDDDGERMLACD CGVWQHTRC+GI D++P KF+C +C
Sbjct: 609 QFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCSGISDFDDVPEKFICRKCA 668
Query: 193 SSYREKNQ 216
S R K +
Sbjct: 669 SPRRGKGR 676
>gi|157359175|emb|CAO67097.1| unnamed protein product [Vitis vinifera]
Length = 686
Score = 109 bits (272), Expect = 6e-023
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = +1
Query: 1 HGLNRFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVC 180
+GL+RFRMERG E W VDC CG KDDDGERMLACD CGVWQHTRCA I S +PA+F+C
Sbjct: 600 NGLSRFRMERGQERWTVDCSCGAKDDDGERMLACDGCGVWQHTRCAEIPDSAAVPARFIC 659
Query: 181 LRCMSS 198
RC SS
Sbjct: 660 WRCGSS 665
>gi|159163271|pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger
Family Protein
Length = 72
Score = 102 bits (252), Expect = 1e-020
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = +1
Query: 22 MERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCM 192
MERG+++W VDC CGTKDDDGERMLACD CGVW HTRC GI+ +D +P+KF+C RC+
Sbjct: 8 MERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI 64
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,734,349,300
Number of Sequences: 7387702
Number of Extensions: 86734349300
Number of Successful Extensions: 36856267
Number of sequences better than 0.0: 0
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