BLASTX 7.6.2
Query= RU43404 /QuerySize=300
(299 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|18399496|ref|NP_566412.1| KH domain-containing protein / zinc... 139 7e-032
gi|157348495|emb|CAO23387.1| unnamed protein product [Vitis vini... 137 3e-031
gi|15240145|ref|NP_196295.1| KH domain-containing protein / zinc... 134 3e-030
gi|21555233|gb|AAM63810.1| unknown [Arabidopsis thaliana] 134 3e-030
gi|147768909|emb|CAN75883.1| hypothetical protein [Vitis vinifera] 119 7e-026
>gi|18399496|ref|NP_566412.1| KH domain-containing protein / zinc finger (CCCH
type) family protein [Arabidopsis thaliana]
Length = 248
Score = 139 bits (349), Expect = 7e-032
Identities = 64/84 (76%), Positives = 76/84 (90%), Gaps = 2/84 (2%)
Frame = -2
Query: 247 MDTRKRGRNEAGGFHAN-GGFKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFL 71
MDTRKRGR EAG F++N GG+KK+KQE++S STG+GSKSKPCTKFFST+GCPFGE+CHFL
Sbjct: 1 MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60
Query: 70 HYVPGGYNAVAQVMNLAPP-PQSS 2
HYVPGGYNAV+Q+ N+ PP PQ S
Sbjct: 61 HYVPGGYNAVSQMTNMGPPIPQVS 84
>gi|157348495|emb|CAO23387.1| unnamed protein product [Vitis vinifera]
Length = 239
Score = 137 bits (343), Expect = 3e-031
Identities = 65/82 (79%), Positives = 72/82 (87%), Gaps = 3/82 (3%)
Frame = -2
Query: 244 DTRKRGRNEAGGFHANGGFKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHY 65
DTRKRGR G +ANGGFKK+KQE++SLSTG+GSKSKPCTKFFST+GCPFGESCHFLHY
Sbjct: 2 DTRKRGR-PGGALNANGGFKKSKQEVESLSTGIGSKSKPCTKFFSTSGCPFGESCHFLHY 60
Query: 64 VPGGYNAVAQVMNLAP--PPQS 5
VPGGYNAVAQ+ N AP PP S
Sbjct: 61 VPGGYNAVAQMTNQAPILPPAS 82
>gi|15240145|ref|NP_196295.1| KH domain-containing protein / zinc finger (CCCH
type) family protein [Arabidopsis thaliana]
Length = 240
Score = 134 bits (335), Expect = 3e-030
Identities = 59/79 (74%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Frame = -2
Query: 247 MDTRKRGRNEAGGFH-ANGGFKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFL 71
MD RKRGR EA H +NGGFK++KQE++S+STG+GSKSKPCTKFFST+GCPFG++CHFL
Sbjct: 1 MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60
Query: 70 HYVPGGYNAVAQVMNLAPP 14
HYVPGGYNA AQ+ NL PP
Sbjct: 61 HYVPGGYNAAAQMTNLRPP 79
>gi|21555233|gb|AAM63810.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 134 bits (335), Expect = 3e-030
Identities = 59/79 (74%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Frame = -2
Query: 247 MDTRKRGRNEAGGFH-ANGGFKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFL 71
MD RKRGR EA H +NGGFK++KQE++S+STG+GSKSKPCTKFFST+GCPFG++CHFL
Sbjct: 1 MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60
Query: 70 HYVPGGYNAVAQVMNLAPP 14
HYVPGGYNA AQ+ NL PP
Sbjct: 61 HYVPGGYNAAAQMKNLRPP 79
>gi|147768909|emb|CAN75883.1| hypothetical protein [Vitis vinifera]
Length = 296
Score = 119 bits (297), Expect = 7e-026
Identities = 53/76 (69%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = -2
Query: 238 RKRGRNEAGGFHANGGFKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVP 59
++RGR + F NGGFKK+KQE +S STG+GSKSKPCTKFFST+GCPFGE CHFLHYVP
Sbjct: 6 KRRGRPDGAAF-GNGGFKKSKQETESFSTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVP 64
Query: 58 GGYNAVAQVMNLAPPP 11
GGY+AV Q+ NL P
Sbjct: 65 GGYSAVTQMTNLGGNP 80
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,734,349,300
Number of Sequences: 7387702
Number of Extensions: 86734349300
Number of Successful Extensions: 36856267
Number of sequences better than 0.0: 0
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