BLASTX 7.6.2
Query= RU44393 /QuerySize=390
(389 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis ... 151 2e-035
gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa] 137 2e-031
gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arach... 132 9e-030
gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa] 131 1e-029
gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum] 127 3e-028
>gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 151 bits (379), Expect = 2e-035
Identities = 74/92 (80%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +2
Query: 113 KGGKSRAAAAKRCDTKLKTKSAGASKPAKKAGKDPNKPKRPASAFFVFMEEFREKYKKDH 292
KGGKS+ A K+ DTKLK+KSAGASK + KA KDPNKPKRPASAFFVFMEEFR++YKK+H
Sbjct: 2 KGGKSK-GAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
Query: 293 PNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
PNNKSVAAVGKAGG+KWKS+SDAEKAPY KA
Sbjct: 61 PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKA 92
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 137 bits (344), Expect = 2e-031
Identities = 68/94 (72%), Positives = 82/94 (87%), Gaps = 2/94 (2%)
Frame = +2
Query: 110 MKGGKSRAAAAKRCDTKLKTKSAGA-SKPAKKAGKDPNKPKRPASAFFVFMEEFREKYKK 286
MKGG+S+ + ++ D KLK K AGA +K +KKA KDPNKPKRPASAFFVFME+FR++YK+
Sbjct: 1 MKGGRSK-SDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKE 59
Query: 287 DHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
HPNNKSVAAVGKAGG+KWKSLS+AEKAP+ AKA
Sbjct: 60 SHPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKA 93
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 132 bits (330), Expect = 9e-030
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +2
Query: 134 AAAKRCDTKLKTKSAGASKPAKKAGKDPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVA 313
A AK D +LK K AG + K KDPNKPKRP SAFFVFM EFRE+YKK+HPNNKSVA
Sbjct: 6 ADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVA 65
Query: 314 AVGKAGGEKWKSLSDAEKAPYQAKA 388
VGKAGG++WKS+SDA+KAPYQAKA
Sbjct: 66 VVGKAGGDRWKSMSDADKAPYQAKA 90
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 131 bits (329), Expect = 1e-029
Identities = 69/97 (71%), Positives = 79/97 (81%), Gaps = 4/97 (4%)
Frame = +2
Query: 110 MKGGKSRA--AAAKRCDTKLKTK--SAGASKPAKKAGKDPNKPKRPASAFFVFMEEFREK 277
MKGG+S++ +AK K TK +A A+K + KA KDPNKPKRPASAFFVFMEEFRE+
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGGAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 278 YKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
YKK+HP NKSVAAVGKAGG+KWKSLS AEKAPY AKA
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKA 97
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 127 bits (317), Expect = 3e-028
Identities = 66/91 (72%), Positives = 73/91 (80%), Gaps = 5/91 (5%)
Frame = +2
Query: 119 GKSRAAAAKRCDTKLKT-KSAGASKPAKKAGKDPNKPKRPASAFFVFMEEFREKYKKDHP 295
GKS+A A D+KL K A +K AKKA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 4 GKSKAGA----DSKLGVRKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHP 59
Query: 296 NNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
NNKSVAAVGKAGG+ WK LS+AEKAPYQAKA
Sbjct: 60 NNKSVAAVGKAGGDAWKKLSEAEKAPYQAKA 90
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,048,254,341
Number of Sequences: 7387702
Number of Extensions: 126048254341
Number of Successful Extensions: 46626747
Number of sequences better than 0.0: 0
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