BLASTX 7.6.2
Query= RU45070 /QuerySize=412
(411 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15223948|ref|NP_172363.1| G-H2AX/GAMMA-H2AX/H2AXA/HTA5; DNA b... 188 1e-046
gi|15221875|ref|NP_175868.1| G-H2AX/GAMMA-H2AX/H2AXB/HTA3; DNA b... 186 4e-046
gi|124360158|gb|ABN08174.1| Histone H2A; Histone-fold [Medicago ... 185 7e-046
gi|15214035|sp|O65759|H2AX_CICAR Histone H2AX 185 9e-046
gi|685035|gb|AAB31111.1| histone H2A homolog [Phaseolus vulgaris... 184 2e-045
>gi|15223948|ref|NP_172363.1| G-H2AX/GAMMA-H2AX/H2AXA/HTA5; DNA binding
[Arabidopsis thaliana]
Length = 142
Score = 188 bits (475), Expect = 1e-046
Identities = 96/115 (83%), Positives = 103/115 (89%)
Frame = +3
Query: 66 TTAVATTAQAGPGKPKATKSVSRSSKAGLQFPVGRVARFLKKGRYAQRVGGGSPVYLSAV 245
T A + T + G GKPKATKSVSRSSKAGLQFPVGR+ARFLK G+YA+RVG G+PVYLSAV
Sbjct: 3 TGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV 62
Query: 246 LEYLAAEVLELAGNAAFDNKKNRITPRHIQLAVRNDEEFTKLLGSVTIANGGVLP 410
LEYLAAEVLELAGNAA DNKK RI PRHIQLAVRNDEE +KLLGSVTIANGGVLP
Sbjct: 63 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 117
>gi|15221875|ref|NP_175868.1| G-H2AX/GAMMA-H2AX/H2AXB/HTA3; DNA binding
[Arabidopsis thaliana]
Length = 142
Score = 186 bits (471), Expect = 4e-046
Identities = 94/109 (86%), Positives = 100/109 (91%)
Frame = +3
Query: 84 TAQAGPGKPKATKSVSRSSKAGLQFPVGRVARFLKKGRYAQRVGGGSPVYLSAVLEYLAA 263
T + G GKPKATKSVSRSSKAGLQFPVGR+ARFLK G+YA+RVG G+PVYLSAVLEYLAA
Sbjct: 9 TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68
Query: 264 EVLELAGNAAFDNKKNRITPRHIQLAVRNDEEFTKLLGSVTIANGGVLP 410
EVLELAGNAA DNKK RI PRHIQLAVRNDEE +KLLGSVTIANGGVLP
Sbjct: 69 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 117
>gi|124360158|gb|ABN08174.1| Histone H2A; Histone-fold [Medicago truncatula]
Length = 139
Score = 185 bits (469), Expect = 7e-046
Identities = 93/109 (85%), Positives = 100/109 (91%)
Frame = +3
Query: 84 TAQAGPGKPKATKSVSRSSKAGLQFPVGRVARFLKKGRYAQRVGGGSPVYLSAVLEYLAA 263
T + G GKPKA KSVSRSSKAGLQFPVGR+ARFLK G+YA+RVG G+PVYLSAVLEYLAA
Sbjct: 6 TTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 65
Query: 264 EVLELAGNAAFDNKKNRITPRHIQLAVRNDEEFTKLLGSVTIANGGVLP 410
EVLELAGNAA DNKKNRI PRHIQLAVRNDEE +KLLG+VTIANGGVLP
Sbjct: 66 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLP 114
>gi|15214035|sp|O65759|H2AX_CICAR Histone H2AX
Length = 139
Score = 185 bits (468), Expect = 9e-046
Identities = 93/109 (85%), Positives = 100/109 (91%)
Frame = +3
Query: 84 TAQAGPGKPKATKSVSRSSKAGLQFPVGRVARFLKKGRYAQRVGGGSPVYLSAVLEYLAA 263
T + G GKPKA+KSVSRSSKAGLQFPVGR+ARFLK G+YA+RVG G+PVYLSAVLEYLAA
Sbjct: 6 TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 65
Query: 264 EVLELAGNAAFDNKKNRITPRHIQLAVRNDEEFTKLLGSVTIANGGVLP 410
EVLELAGNAA DNK NRI PRHIQLAVRNDEE +KLLGSVTIANGGVLP
Sbjct: 66 EVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 114
>gi|685035|gb|AAB31111.1| histone H2A homolog [Phaseolus vulgaris, Great
Northern, immature embryos, Peptide Partial, 146 aa]
Length = 146
Score = 184 bits (466), Expect = 2e-045
Identities = 94/118 (79%), Positives = 103/118 (87%)
Frame = +3
Query: 57 ITMTTAVATTAQAGPGKPKATKSVSRSSKAGLQFPVGRVARFLKKGRYAQRVGGGSPVYL 236
++ T TT + G GKPK TKSVSRSSKAGLQFPVGR+AR+LK GRYAQRVG GSPVYL
Sbjct: 1 MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60
Query: 237 SAVLEYLAAEVLELAGNAAFDNKKNRITPRHIQLAVRNDEEFTKLLGSVTIANGGVLP 410
SAVLEYLAAEVLELAG AA DNKK+RI PRHIQLAVRNDEE +KL+GSVTIA+GGVLP
Sbjct: 61 SAVLEYLAAEVLELAGIAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLP 118
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,048,254,341
Number of Sequences: 7387702
Number of Extensions: 126048254341
Number of Successful Extensions: 46626747
Number of sequences better than 0.0: 0
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