BLASTX 7.6.2
Query= RU45116 /QuerySize=269
(268 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|194694834|gb|ACF81501.1| unknown [Zea mays] 72 1e-011
gi|162463122|ref|NP_001105631.1| histone deacetylase 2 isoform b... 72 1e-011
gi|7804960|gb|AAF70196.1|AF255711_1 putative histone deacetylase... 64 2e-009
gi|57900677|gb|AAW57802.1| putative histone deacetylase HD2 [Ory... 64 2e-009
gi|51854334|gb|AAU10714.1| putative histone deacetylase HD2 [Ory... 64 2e-009
>gi|194694834|gb|ACF81501.1| unknown [Zea mays]
Length = 303
Score = 72 bits (175), Expect = 1e-011
Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Frame = +2
Query: 2 DDSDAEDEETPTPKKPESKKRAQVSGSVKTPVSAKKAKIVTSTPQKTDGKKGG-HTDTPA 178
D SD ++EETPTPKKPE+ K+ ++KTP+S KKAK+ T QKT GKKG H TP
Sbjct: 194 DTSDDDEEETPTPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPH 253
Query: 179 TDKSKTQTPKSAGGNFSCGSCSKSFGS 259
K KT A + S KS GS
Sbjct: 254 PAKGKT----PANNDKSTEKSPKSGGS 276
>gi|162463122|ref|NP_001105631.1| histone deacetylase 2 isoform b [Zea mays]
Length = 303
Score = 72 bits (174), Expect = 1e-011
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 DDSDAEDEETPTPKKPESKKRAQVSGSVKTPVSAKKAKIVTSTPQKTDGKKGG-HTDTPA 178
D SD ++EETPTPKKPE+ K+ ++KTP+S KKAK+ T QKT GKKG H TP
Sbjct: 194 DTSDDDEEETPTPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPH 253
Query: 179 TDKSKT 196
K KT
Sbjct: 254 PAKGKT 259
>gi|7804960|gb|AAF70196.1|AF255711_1 putative histone deacetylase HD2 [Oryza
sativa]
Length = 297
Score = 64 bits (155), Expect = 2e-009
Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 DDSDAEDEETPTPKKPESKKRAQVSGSVKTPVSAKKAKIVTSTPQKTDGKKGGHTDTPAT 181
DD D DEE TPKKPE+ KR +KTP S KKAKI T + QKT KKG H TP
Sbjct: 188 DDEDESDEE-DTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHP 246
Query: 182 DKSKTQTP 205
K ++TP
Sbjct: 247 AKQASKTP 254
>gi|57900677|gb|AAW57802.1| putative histone deacetylase HD2 [Oryza sativa
(japonica cultivar-group)]
Length = 274
Score = 64 bits (155), Expect = 2e-009
Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 DDSDAEDEETPTPKKPESKKRAQVSGSVKTPVSAKKAKIVTSTPQKTDGKKGGHTDTPAT 181
DD D DEE TPKKPE+ KR +KTP S KKAKI T + QKT KKG H TP
Sbjct: 165 DDEDESDEE-DTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHP 223
Query: 182 DKSKTQTP 205
K ++TP
Sbjct: 224 AKQASKTP 231
>gi|51854334|gb|AAU10714.1| putative histone deacetylase HD2 [Oryza sativa
(japonica cultivar-group)]
Length = 297
Score = 64 bits (155), Expect = 2e-009
Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 DDSDAEDEETPTPKKPESKKRAQVSGSVKTPVSAKKAKIVTSTPQKTDGKKGGHTDTPAT 181
DD D DEE TPKKPE+ KR +KTP S KKAKI T + QKT KKG H TP
Sbjct: 188 DDEDESDEE-DTPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHP 246
Query: 182 DKSKTQTP 205
K ++TP
Sbjct: 247 AKQASKTP 254
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,048,254,341
Number of Sequences: 7387702
Number of Extensions: 126048254341
Number of Successful Extensions: 46626747
Number of sequences better than 0.0: 0
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