BLASTX 7.6.2
Query= RU60677 /QuerySize=617
(616 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118484092|gb|ABK93931.1| unknown [Populus trichocarpa] 227 6e-058
gi|15232448|ref|NP_190989.1| ribosomal protein L17 family protei... 224 4e-057
gi|21554345|gb|AAM63452.1| ribosomal protein L17-like protein [A... 222 2e-056
gi|75278818|sp|O80363.1|RK17_TOBAC RecName: Full=50S ribosomal p... 217 6e-055
gi|118481525|gb|ABK92705.1| unknown [Populus trichocarpa] 198 3e-049
>gi|118484092|gb|ABK93931.1| unknown [Populus trichocarpa]
Length = 224
Score = 227 bits (577), Expect = 6e-058
Identities = 126/192 (65%), Positives = 145/192 (75%), Gaps = 8/192 (4%)
Frame = +3
Query: 57 MAMTMALATATGTVDTGSRWSMASLRSALPSPSTVAASS----SSSTHCGHRGLCLSLSL 224
MA+++A+A T T +RWSMASL SALPS S AAS+ SS C + + LS +
Sbjct: 1 MALSVAMA-VDATASTSNRWSMASLWSALPSSSKSAASTMRFPSSRCQCPRQSISLSRTR 59
Query: 225 SLSQSVPKPQKYFGSFTGLSPF--NPLGLSDNTSFEHNFTIIDNGGRVYAMRHGRKVPKL 398
Q +P SFT L+P + LG SDN++F H F +DNG R +AMRHGR+VPKL
Sbjct: 60 RQQQQQRRP-LLTRSFTALNPLSSSSLGFSDNSTFGHAFPSVDNGSRFFAMRHGRRVPKL 118
Query: 399 NRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFI 578
NRPPDQR+ALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAK+GSLHKRRQALGFI
Sbjct: 119 NRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKDGSLHKRRQALGFI 178
Query: 579 YEKQIVHALFAE 614
YEKQIVHALFAE
Sbjct: 179 YEKQIVHALFAE 190
>gi|15232448|ref|NP_190989.1| ribosomal protein L17 family protein [Arabidopsis
thaliana]
Length = 211
Score = 224 bits (570), Expect = 4e-057
Identities = 125/180 (69%), Positives = 141/180 (78%), Gaps = 15/180 (8%)
Frame = +3
Query: 84 ATGTVDTGSRWSMASLRSALPSPSTVAASSSSSTHCGHRGLCLSLSLSLSQSVPKPQKYF 263
AT T WSM+SL+SALPS +++ SSSS R + L L +S S S+P
Sbjct: 10 ATPTDSVSRVWSMSSLKSALPSTASLRLPSSSS----RRPVTLRLPIS-SPSLP------ 58
Query: 264 GSFTGLSPFNPL---GLSDNTSFEHNFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALLR 434
SF+GLSP NPL GL D SFE+ F I+D GGR+YAMRHGR+VPKLNRPPDQRKALLR
Sbjct: 59 -SFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 117
Query: 435 GLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAE 614
GLTTQLLKHGRIKTTRARASAMRK+VDKMITLAK+GSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 118 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 177
>gi|21554345|gb|AAM63452.1| ribosomal protein L17-like protein [Arabidopsis
thaliana]
Length = 203
Score = 222 bits (565), Expect = 2e-056
Identities = 122/170 (71%), Positives = 138/170 (81%), Gaps = 15/170 (8%)
Frame = +3
Query: 114 WSMASLRSALPSPSTVAASSSSSTHCGHRGLCLSLSLSLSQSVPKPQKYFGSFTGLSPFN 293
WSM+SL+SALPS +++ SSSS R + L L +S S S+P SF+GLSP N
Sbjct: 12 WSMSSLKSALPSTASLRLPSSSS----RRPVTLRLPIS-SPSLP-------SFSGLSPVN 59
Query: 294 PL---GLSDNTSFEHNFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALLRGLTTQLLKHG 464
PL GL D SFE+ F I+D GGR+YAMRHGR+VPKLNRPPDQRKALLRGLTTQLLKHG
Sbjct: 60 PLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHG 119
Query: 465 RIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAE 614
RIKTTRARASAMRK+VDKMITLAK+GSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 120 RIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 169
>gi|75278818|sp|O80363.1|RK17_TOBAC RecName: Full=50S ribosomal protein L17,
chloroplastic; AltName: Full=CL17; Flags: Precursor
Length = 205
Score = 217 bits (551), Expect = 6e-055
Identities = 116/170 (68%), Positives = 133/170 (78%), Gaps = 9/170 (5%)
Frame = +3
Query: 114 WSMASLRSALPSPSTVAASSSSSTHCGHRGLCLSLSLSLSQSVPKPQKYFGSFTGLSPFN 293
WSM+ L+SALPS + +SSS CG L + S S + SF GL+P +
Sbjct: 8 WSMSCLKSALPSIQPI-SSSSLRFSCGPSPSRLRICKPKSSS-----RLLHSFVGLAPLH 61
Query: 294 P---LGLSDNTSFEHNFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALLRGLTTQLLKHG 464
P L D+TSFEH+FT+IDNGGRV+AMRHGRKVPKLNRPPDQR+ALLRGLTTQLLKHG
Sbjct: 62 PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121
Query: 465 RIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAE 614
RIKTT+ARA A+RKYVDKMIT+AK+GSLHKRRQALGFIYEKQIVHALFAE
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAE 171
>gi|118481525|gb|ABK92705.1| unknown [Populus trichocarpa]
Length = 227
Score = 198 bits (502), Expect = 3e-049
Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 3/160 (1%)
Frame = +3
Query: 135 SALPSPSTVAASSSSSTHCGHRGLCLSLSLSLSQSVPKPQKYFGSFTGLSPFNPLGLSDN 314
S+ + +T+ SSS C H+ + S + P + SFT L+P LG SDN
Sbjct: 37 SSTSAAATIRLPSSSGRQCFHKSISFSSPRRQQRQQPVLTR---SFTVLNPLLSLGFSDN 93
Query: 315 TSFEHNFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARAS 494
+ H F +DNG R +AMRHG++VPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTRARAS
Sbjct: 94 VTCGHVFPDVDNGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARAS 153
Query: 495 AMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAE 614
AMRKYVDKMITLAK+GSLHKRRQALGFI+EKQIVHALFAE
Sbjct: 154 AMRKYVDKMITLAKDGSLHKRRQALGFIFEKQIVHALFAE 193
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,287,004,385
Number of Sequences: 7387702
Number of Extensions: 264287004385
Number of Successful Extensions: 149960990
Number of sequences better than 0.0: 0
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