BLASTX 7.6.2
Query= RU01026 /QuerySize=1219
(1218 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.0... 153 3e-036
sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator ... 134 1e-030
sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 P... 97 2e-019
sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN... 96 4e-019
sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=... 96 4e-019
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie... 96 4e-019
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul... 96 4e-019
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve... 96 4e-019
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 92 8e-018
sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 P... 87 2e-016
sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabd... 81 1e-014
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 80 2e-014
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 79 5e-014
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=... 79 5e-014
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=... 79 5e-014
sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropical... 79 5e-014
sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=r... 78 9e-014
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 78 1e-013
sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELA... 77 2e-013
sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis G... 77 3e-013
sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RB... 74 1e-012
sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=... 74 1e-012
sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=... 74 1e-012
sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus ... 74 1e-012
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 62 7e-009
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa... 61 1e-008
sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 58 1e-007
sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-ind... 57 2e-007
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 56 4e-007
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 55 6e-007
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 153 bits (385), Expect = 3e-036
Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 2/174 (1%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQT 711
T+W G+L W+ EA++ + G+ VK+IRN+ TG GY FVEF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 712 YNGTPMPNTEQPFRLNWATFSA-GDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTS 888
N P+P T F+LNWA+ ++ +S+ SIFVGDL+ +V + + FASRY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 889 VKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
K AK++ D T S+GYGFVRF DEN++ A+ EM G C RP+R+G+ATPK
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1
Length = 632
Score = 134 bits (336), Expect = 1e-030
Identities = 75/177 (42%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTE--GYGFVEFYSREAAEEVL 705
T+W GDL WMD ++ +A + +VKV+R+K + Y FV+F S AAE L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 706 QTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSD--LSIFVGDLATDVTDTMLQETFASR 879
YN T +P F+LNWAT S D SIFVGDL D+ L TF S
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 880 YTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
Y S AK++ D TG S+ YGFVRF E E+ A++ M G C RP+RI VA+PK
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 97 bits (240), Expect = 2e-019
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Frame = +1
Query: 529 RTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQ 708
RT++ G+L + E + F+ G S K+I + + Y FVEFY A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 709 TYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTS 888
NG + E ++NWAT + ++ DTS+ +FVGDL+ ++T ++ FA +
Sbjct: 67 AMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP-FGK 122
Query: 889 VKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ A+VV+D TG+SKGYGFV F ++ + AIV M G + R +R AT K
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1
SV=2
Length = 523
Score = 96 bits (237), Expect = 4e-019
Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Frame = +1
Query: 652 EGYGFVEFYSREAAEEVLQTYNGTPMPN-TEQPFRLNWATFSAGD-----RRADTSSDLS 813
+GY FV+F S A L NG +PN + +LNWAT S + + ++ S
Sbjct: 106 QGYCFVDFPSSTHAANAL-LKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 814 IFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVE 993
IFVGDLA +VT++ L E F +RY S AK+V D TG SKGYGFV+F + +E+ A+ E
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 994 MNGAYCSSRPMRIG 1035
M G + + R +++G
Sbjct: 225 MQGVFLNGRAIKVG 238
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces
cerevisiae GN=NGR1 PE=1 SV=2
Length = 672
Score = 96 bits (237), Expect = 4e-019
Identities = 46/114 (40%), Positives = 71/114 (62%)
Frame = +1
Query: 709 TYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTS 888
T N P ++ FRLNWA+ + ++ + S+FVGDL+ T+ L F +R+ S
Sbjct: 159 TTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKS 218
Query: 889 VKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
VK +V+ D TG S+ +GFVRFGDE+ER +A++EM+G + R +R+ ATP+
Sbjct: 219 VKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4
PE=1 SV=1
Length = 424
Score = 96 bits (237), Expect = 4e-019
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQT 711
T++ G L + E L F G V + + +++ TGQ +GYGFVEF S E A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 712 YNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTSV 891
N + +P R+N A SA ++ D + +IF+G+L ++ + +L +TF++ +
Sbjct: 74 MNMIKLYG--KPIRVNKA--SAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 892 KGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ K+++D +TG SKGY F+ F + AI MNG Y +RP+ + A K
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 96 bits (237), Expect = 4e-019
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQT 711
T++ G L + E L F G V + + +++ TGQ +GYGFVEF S E A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 712 YNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTSV 891
N + +P R+N A SA ++ D + +IF+G+L ++ + +L +TF++ +
Sbjct: 74 MNMIKLYG--KPIRVNKA--SAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 892 KGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ K+++D +TG SKGY F+ F + AI MNG Y +RP+ + A K
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 96 bits (237), Expect = 4e-019
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQT 711
T++ G L + E L F G V + + +++ TGQ +GYGFVEF S E A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 712 YNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTSV 891
N + +P R+N A SA ++ D + +IF+G+L ++ + +L +TF++ +
Sbjct: 74 MNMIKLYG--KPIRVNKA--SAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 892 KGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ K+++D +TG SKGY F+ F + AI MNG Y +RP+ + A K
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 92 bits (226), Expect = 8e-018
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Frame = +1
Query: 514 PTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAA 693
P +E + ++ G+L + +D L G F G V +VI N++T ++ G+GFV + E A
Sbjct: 51 PPEEAK-LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 109
Query: 694 EEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRA---DTSSDLSIFVGDLATDVTDTMLQE 864
E+ ++ NG M + +N A RA D ++VG+L DV + L++
Sbjct: 110 EKAVELLNGYDMDGRQ--LTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQ 167
Query: 865 TFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVA 1041
F S + V A+VV D TGRS+G+GFV E+E AI ++G R +R+ VA
Sbjct: 168 LF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 87 bits (214), Expect = 2e-016
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Frame = +1
Query: 637 QTGQTEGYGFVEFYSREAAEEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSI 816
Q + Y FVEFY A L NG + E ++NWAT + ++ DTS+ +
Sbjct: 60 QHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHV 116
Query: 817 FVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEM 996
FVGDL+ ++T ++ FA + + A+VV+D TG+SKGYGFV F ++ + AIV M
Sbjct: 117 FVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 997 NGAYCSSRPMRIGVATPK 1050
G + R +R AT K
Sbjct: 176 GGQWLGGRQIRTNWATRK 193
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans
GN=sap-49 PE=3 SV=2
Length = 388
Score = 81 bits (198), Expect = 1e-014
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = +1
Query: 532 TIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQT 711
TI+ G L + E+ L G V SV + +++ T +G+GFVEF E A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 712 YNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTSV 891
N + +P ++N A SA ++ D + +IFVG+L +V + +L +TF++ +
Sbjct: 74 LNMIKLYG--KPIKVNKA--SAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 892 KGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVA 1041
+ K+++D ++G SKG+ F+ F A+ MNG + +R + + A
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 80 bits (196), Expect = 2e-014
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Frame = +1
Query: 535 IWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQTY 714
++ G+L + +D L F G V +VI N+ T Q+ G+GFV + E AE+ ++ Y
Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197
Query: 715 NGTPMPNTEQPFRLNWATFSAGDRRADT--------SSDLSIFVGDLATDVTDTMLQETF 870
N + T + RR + I+VG++ + D L++ F
Sbjct: 198 NRYDVNG-------RLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF 250
Query: 871 ASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVA 1041
S + V A+VV D TGRS+G+GFV E E + AI ++G R +R+ VA
Sbjct: 251 -SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1
SV=2
Length = 530
Score = 79 bits (193), Expect = 5e-014
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 5/180 (2%)
Frame = +1
Query: 523 EVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEV 702
+ RT++ L + L F+ G+V V++I ++ + +++G +VEF +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 703 L----QTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETF 870
+ Q G P+ N A A + + ++ + ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 871 ASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ ++ +++ D+ TGRSKGYGF+ F D KA+ ++NG + RPM++G T +
Sbjct: 271 -EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1
SV=1
Length = 530
Score = 79 bits (193), Expect = 5e-014
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 5/180 (2%)
Frame = +1
Query: 523 EVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEV 702
+ RT++ L + L F+ G+V V++I ++ + ++ G +VEF +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLA 210
Query: 703 L----QTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETF 870
+ Q G P+ N A A + + ++ + ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 871 ASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ ++ +++ D+ TGRSKGYGF+ F D KA+ ++NG + RPM++G T +
Sbjct: 271 -EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2
SV=1
Length = 524
Score = 79 bits (193), Expect = 5e-014
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 5/180 (2%)
Frame = +1
Query: 523 EVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEV 702
+ RT++ L + L F+ G+V V++I ++ + +++G +VEF +
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 703 L----QTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETF 870
+ Q G P+ N A A + + ++ + ++VG L ++T+ ML+ F
Sbjct: 211 IGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF 270
Query: 871 ASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
+ ++ +++ D+ TGRSKGYGF+ F D KA+ ++NG + RPM++G T +
Sbjct: 271 -EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42
PE=2 SV=1
Length = 392
Score = 79 bits (193), Expect = 5e-014
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
S D IF GDL +V D +L F SRY S AKV++D TG++KGYGFV F D N+
Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYV 348
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 349 RAMREMNGKYVGSRPIKL 366
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 78 bits (191), Expect = 9e-014
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
+ D IF GDL +V D +L F SRY S AKVV+D TG++KGYGFV F D N+
Sbjct: 300 TDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 358
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 359 RAMREMNGRYVGSRPIKL 376
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 78 bits (190), Expect = 1e-013
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 3/177 (1%)
Frame = +1
Query: 514 PTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAA 693
P++E + ++ G+L + ++ L F G V +VI N++T Q+ G+GFV S + A
Sbjct: 146 PSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 694 EEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRADT-SSDLSIFVGDLATDVTDTMLQETF 870
E ++ +N + S +R ++VG+L DV + L++ F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 871 ASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVA 1041
S + V A+VV D TGRS+G+GFV D +E +AI ++G R +R+ VA
Sbjct: 265 -SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 77 bits (188), Expect = 2e-013
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Frame = +1
Query: 562 MDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQTYNGTPMPNTE 741
M + L F G++ S K++R+K TGQ+ GYGFV + + AE+ + T NG
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG------- 102
Query: 742 QPFRLNWATFSAGDRRADTSS--DLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQD 915
RL T R ++S D +++V L +T L++ F S+Y + ++++ D
Sbjct: 103 --LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVD 159
Query: 916 ANTGRSKGYGFVRFGDENERTKAIVEMNG 1002
TG S+G GF+RF E +AI +NG
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2
SV=1
Length = 392
Score = 77 bits (187), Expect = 3e-013
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +1
Query: 805 DLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKA 984
D IF GDL +V D +L F SRY S AKV++D TG++KGYGFV F D N+ +A
Sbjct: 292 DFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 985 IVEMNGAYCSSRPMRI 1032
EMNG Y SRP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 74 bits (181), Expect = 1e-012
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
+ D IF GDL +V D +L F SR+ S AKV++D TG++KGYGFV F D ++
Sbjct: 346 ADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 404
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 405 RAMREMNGKYVGSRPIKL 422
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=2
SV=1
Length = 480
Score = 74 bits (181), Expect = 1e-012
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
+ D IF GDL +V D +L F SR+ S AKV++D TG++KGYGFV F D ++
Sbjct: 378 ADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 437 RAMREMNGKYVGSRPIKL 454
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=2
SV=1
Length = 474
Score = 74 bits (181), Expect = 1e-012
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
+ D IF GDL +V D +L F SR+ S AKV++D TG++KGYGFV F D ++
Sbjct: 372 ADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 430
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 431 RAMREMNGKYVGSRPIKL 448
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=2
SV=1
Length = 474
Score = 74 bits (181), Expect = 1e-012
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +1
Query: 799 SSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERT 978
+ D IF GDL +V D +L F SR+ S AKV++D TG++KGYGFV F D ++
Sbjct: 372 ADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 430
Query: 979 KAIVEMNGAYCSSRPMRI 1032
+A+ EMNG Y SRP+++
Sbjct: 431 RAMREMNGKYVGSRPIKL 448
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial
OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1
Length = 158
Score = 62 bits (149), Expect = 7e-009
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 814 IFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVE 993
+F+G L+ D L++ FA + V AKV+ D TGRS+G+GFV F DE T AI E
Sbjct: 37 LFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 994 MNGAYCSSRPMRIGVATPK 1050
M+G + R +R+ A +
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23
PE=1 SV=1
Length = 439
Score = 61 bits (147), Expect = 1e-008
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 775 AGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVR 954
A + + + ++VG L ++T+ ML+ F + + +++D++TGRSKGYGF+
Sbjct: 252 ANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFIT 310
Query: 955 FGDENERTKAIVEMNGAYCSSRPMRIGVATPK 1050
F D +A+ ++NG + RPMR+G T +
Sbjct: 311 FSDSECARRALEQLNGFELAGRPMRVGHVTER 342
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus
GN=GRP10 PE=2 SV=1
Length = 169
Score = 58 bits (139), Expect = 1e-007
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 817 FVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEM 996
FVG LA D L+ TF S++ V +K++ D TGRS+G+GFV F DE AI EM
Sbjct: 9 FVGGLAWATGDAELERTF-SQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEM 67
Query: 997 NGAYCSSRPMRIGVA 1041
NG R + + A
Sbjct: 68 NGKELDGRTITVNEA 82
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein
OS=Zea mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 57 bits (136), Expect = 2e-007
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 817 FVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEM 996
FVG LA ++ L+ FAS Y + +KV+ D TGRS+G+GFV F EN AI M
Sbjct: 11 FVGGLAWATSNESLENAFAS-YGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENM 69
Query: 997 NGAYCSSRPMRIGVA 1041
NG R + + A
Sbjct: 70 NGKELDGRNITVNQA 84
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4
PE=1 SV=1
Length = 644
Score = 56 bits (134), Expect = 4e-007
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Frame = +1
Query: 808 LSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAI 987
+++++ +L + D L++ F S + S+ AKV+ + GRSKG+GFV F E TKA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 350
Query: 988 VEMNGAYCSSRPMRIGVATPKK 1053
EMNG S+P+ + +A K+
Sbjct: 351 TEMNGRIVGSKPLYVALAQRKE 372
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba
PE=2 SV=1
Length = 166
Score = 55 bits (132), Expect = 6e-007
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 817 FVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEM 996
FVG LA TD ET S+Y V +K++ D TGRS+G+GFV F DE AI M
Sbjct: 11 FVGGLAW-ATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 997 NGAYCSSRPMRIGVA 1041
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,055,803,260
Number of Sequences: 462764
Number of Extensions: 3055803260
Number of Successful Extensions: 28798457
Number of sequences better than 0.0: 0
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