BLASTX 7.6.2
Query= RU01622 /QuerySize=595
(594 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F ... 152 2e-036
sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos ta... 131 3e-030
sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo s... 131 3e-030
sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus mu... 131 3e-030
sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopu... 131 3e-030
sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosop... 128 3e-029
sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F ... 124 6e-028
sp|O59734|RUXF_SCHPO Probable small nuclear ribonucleoprotein F ... 110 7e-024
sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyo... 101 3e-021
sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F ... 98 3e-020
sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccha... 86 1e-016
sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS... 72 3e-012
sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS... 71 4e-012
sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS... 69 2e-011
sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS... 69 2e-011
sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS... 69 2e-011
sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS... 67 9e-011
sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS... 66 1e-010
sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS... 65 3e-010
sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS... 65 3e-010
sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS... 65 3e-010
sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS... 64 4e-010
sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS... 64 6e-010
sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS... 62 2e-009
sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protei... 59 1e-008
sp|Q5K712|LSM6_CRYNE U6 snRNA-associated Sm-like protein LSm6 OS... 57 7e-008
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 152 bits (382), Expect = 2e-036
Identities = 72/77 (93%), Positives = 73/77 (94%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MATIPVNPKPFLNNLTGKTV VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Query: 245 GEILIRCNNVLYLRGVP 295
GEILIRCNNVLY+RGVP
Sbjct: 61 GEILIRCNNVLYVRGVP 77
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF
PE=3 SV=2
Length = 86
Score = 131 bits (329), Expect = 3e-030
Identities = 59/74 (79%), Positives = 68/74 (91%)
Frame = +2
Query: 71 TIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGE 250
++P+NPKPFLN LTGK V VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 251 ILIRCNNVLYLRGV 292
+LIRCNNVLY+RGV
Sbjct: 62 VLIRCNNVLYIRGV 75
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF
PE=1 SV=1
Length = 86
Score = 131 bits (329), Expect = 3e-030
Identities = 59/74 (79%), Positives = 68/74 (91%)
Frame = +2
Query: 71 TIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGE 250
++P+NPKPFLN LTGK V VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 251 ILIRCNNVLYLRGV 292
+LIRCNNVLY+RGV
Sbjct: 62 VLIRCNNVLYIRGV 75
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf
PE=2 SV=1
Length = 86
Score = 131 bits (329), Expect = 3e-030
Identities = 59/74 (79%), Positives = 68/74 (91%)
Frame = +2
Query: 71 TIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGE 250
++P+NPKPFLN LTGK V VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 251 ILIRCNNVLYLRGV 292
+LIRCNNVLY+RGV
Sbjct: 62 VLIRCNNVLYIRGV 75
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus laevis
GN=snrpf PE=3 SV=1
Length = 86
Score = 131 bits (329), Expect = 3e-030
Identities = 59/74 (79%), Positives = 68/74 (91%)
Frame = +2
Query: 71 TIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGE 250
++P+NPKPFLN LTGK V VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 251 ILIRCNNVLYLRGV 292
+LIRCNNVLY+RGV
Sbjct: 62 VLIRCNNVLYIRGV 75
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila
melanogaster GN=DebB PE=1 SV=2
Length = 88
Score = 128 bits (320), Expect = 3e-029
Identities = 58/75 (77%), Positives = 66/75 (88%)
Frame = +2
Query: 68 ATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLG 247
A +P+NPKPFLN LTGK V VKLKWG EYKGFLVSVD YMN+QLANTEE I+G TGNLG
Sbjct: 3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLG 62
Query: 248 EILIRCNNVLYLRGV 292
E+LIRCNNVLY++G+
Sbjct: 63 EVLIRCNNVLYIKGM 77
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F
OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 124 bits (309), Expect = 6e-028
Identities = 60/75 (80%), Positives = 64/75 (85%)
Frame = +2
Query: 68 ATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLG 247
A PVNPKPFLN+LTGK V KLKWGMEYKG LV+VDSYMNLQLA+ EEYIDG GNLG
Sbjct: 3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLG 62
Query: 248 EILIRCNNVLYLRGV 292
EILIRCNNVLY+ GV
Sbjct: 63 EILIRCNNVLYVGGV 77
>sp|O59734|RUXF_SCHPO Probable small nuclear ribonucleoprotein F
OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1
Length = 78
Score = 110 bits (274), Expect = 7e-024
Identities = 52/73 (71%), Positives = 59/73 (80%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
M+ +PVNPKPFL L GK V V+LKWG EYKG L SVDSYMNLQL N EE +DG TG+L
Sbjct: 1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDL 60
Query: 245 GEILIRCNNVLYL 283
GEILIRCNNVL++
Sbjct: 61 GEILIRCNNVLWV 73
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium
discoideum GN=snrpf PE=3 SV=1
Length = 91
Score = 101 bits (251), Expect = 3e-021
Identities = 49/70 (70%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Frame = +2
Query: 86 PKPFLNNLTGKTVFVKLKW-GMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
PKPFL +L GK + V+LKW GMEY+G L SVDSYMNLQLA TEE+IDG G LGE+LIR
Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIR 68
Query: 263 CNNVLYLRGV 292
CNNVL++RG+
Sbjct: 69 CNNVLFVRGI 78
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora
crassa GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 98 bits (242), Expect = 3e-020
Identities = 44/75 (58%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWG-MEYKGFLVSVDSYMNLQLANTEEYIDGQWTGN 241
M+ +PVNP+PFL +L V ++LKWG EY G LVS+DSYMN+QL++T+EYI+ ++TG
Sbjct: 1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGA 60
Query: 242 LGEILIRCNNVLYLR 286
LG++LIRCNNVLY++
Sbjct: 61 LGQVLIRCNNVLYIK 75
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccharomyces
cerevisiae GN=SMX3 PE=1 SV=1
Length = 86
Score = 86 bits (212), Expect = 1e-016
Identities = 44/74 (59%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +2
Query: 77 PVNPKPFLNNLTGKTVFVKLKW-GMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEI 253
PVNPKPFL L V VKLK+ EY+G LVS D+Y NLQL EE++ G G LGEI
Sbjct: 12 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEI 71
Query: 254 LIRCNNVLYLRGVP 295
IRCNNVLY+R +P
Sbjct: 72 FIRCNNVLYIRELP 85
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6
OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1
Length = 75
Score = 72 bits (174), Expect = 3e-012
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FLN + GK V ++L G++YKG L +D YMNL L TEEY++G+ T G+ IR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 64 GNNVLYV 70
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 71 bits (173), Expect = 4e-012
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL+ +TG V VKL G+ YKG L SVD YMN+ L TEEY+DG+ + G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens
GN=LSM6 PE=1 SV=1
Length = 80
Score = 69 bits (167), Expect = 2e-011
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 86 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIRC 265
P FL + G+ V VKL G++Y+G L +D YMN+ L TEEY++GQ G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 266 NNVLYL 283
NNVLY+
Sbjct: 68 NNVLYI 73
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus
GN=Lsm6 PE=2 SV=1
Length = 80
Score = 69 bits (167), Expect = 2e-011
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 86 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIRC 265
P FL + G+ V VKL G++Y+G L +D YMN+ L TEEY++GQ G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 266 NNVLYL 283
NNVLY+
Sbjct: 68 NNVLYI 73
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides
immitis GN=LSM6 PE=3 SV=1
Length = 80
Score = 69 bits (166), Expect = 2e-011
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL+ +TG +V VKL G+ YKG L S+D YMN+ L T+E+++G+ + G++ +R
Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVR 70
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria
bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1
Length = 99
Score = 67 bits (161), Expect = 9e-011
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +2
Query: 68 ATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLG 247
AT +P FL + GK V V+L G++Y+G L +D YMN+ L TEE+++G T G
Sbjct: 22 ATHTGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYG 81
Query: 248 EILIRCNNVLYL 283
+ IR NNVLY+
Sbjct: 82 DAFIRGNNVLYI 93
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
fumigatus GN=lsm6 PE=3 SV=2
Length = 80
Score = 66 bits (159), Expect = 1e-010
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL + G V VKL G+ YKG L SVD YMN+ L +EE++DG+ + G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIR 70
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium
globosum GN=LSM6 PE=3 SV=2
Length = 82
Score = 65 bits (157), Expect = 3e-010
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL+ + G V VKL G+ YKG L SVD YMN+ L TEEY++G + G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 263 CNNVLYL 283
NNV+Y+
Sbjct: 73 GNNVMYI 79
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus GN=LSM6 PE=3 SV=2
Length = 80
Score = 65 bits (157), Expect = 3e-010
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +2
Query: 80 VNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILI 259
++P FL + G +V VKL G+EY+G L ++D YMN+ L N +E ID + T + G++ +
Sbjct: 10 IDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFL 69
Query: 260 RCNNVLYL 283
R NNVLY+
Sbjct: 70 RGNNVLYI 77
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=lsm6 PE=3 SV=2
Length = 80
Score = 65 bits (156), Expect = 3e-010
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL + G V VKL G+ Y+G L SVD YMN+ L +EE++DG+ + G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIR 70
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces
hansenii GN=LSM6 PE=3 SV=2
Length = 85
Score = 64 bits (155), Expect = 4e-010
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +2
Query: 86 PKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIRC 265
P FL+ + G +V V+L G+EY G L S+D YMN+ L T+E++ G N G++ IR
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRG 76
Query: 266 NNVLYL 283
NNVLY+
Sbjct: 77 NNVLYI 82
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
clavatus GN=lsm6 PE=3 SV=2
Length = 78
Score = 64 bits (154), Expect = 6e-010
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL+ + G V VKL G+ YKG L SVD YMN+ L ++E++DG+ + G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 70 GNNVLYI 76
>sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis
cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=LSM6 PE=3 SV=2
Length = 95
Score = 62 bits (149), Expect = 2e-009
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL + GK V V+L G++Y+G L +D YMN+ + TEE ++G+ G+ IR
Sbjct: 23 SPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIR 82
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 83 GNNVLYI 89
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 59 bits (142), Expect = 1e-008
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 95 FLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIRCNNV 274
F G+ V VKL G+EY+G L VD MN+ + TEEY++GQ G+ +R NNV
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 275 LYLRGVP 295
LY+ P
Sbjct: 80 LYISAQP 86
>sp|Q5K712|LSM6_CRYNE U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans GN=LSM6 PE=3 SV=1
Length = 88
Score = 57 bits (136), Expect = 7e-008
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +2
Query: 83 NPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNLGEILIR 262
+P FL N+ GK V V++ G++Y G L +D YMN+ L EE+ T G+ +R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 263 CNNVLYL 283
NNVLY+
Sbjct: 76 GNNVLYI 82
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,642,047
Number of Sequences: 462764
Number of Extensions: 3407642047
Number of Successful Extensions: 34563130
Number of sequences better than 0.0: 0
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