BLASTX 7.6.2
Query= RU02656 /QuerySize=514
(513 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II... 68 2e-011
sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II... 68 2e-011
sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II... 68 2e-011
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II... 65 2e-010
sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II... 63 7e-010
>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III subunit
RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1
Length = 58
Score = 68 bits (165), Expect = 2e-011
Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = -3
Query: 400 DPQQP-AEPVYYICGDCGMEIPLKPNDVIQCRECGYRILYKKRTRRIVQYEAR 245
D Q P +P+ YICG+C E +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 6 DVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III subunit
RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1
Length = 58
Score = 68 bits (165), Expect = 2e-011
Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = -3
Query: 400 DPQQP-AEPVYYICGDCGMEIPLKPNDVIQCRECGYRILYKKRTRRIVQYEAR 245
D Q P +P+ YICG+C E +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 6 DVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit
RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2
Length = 58
Score = 68 bits (165), Expect = 2e-011
Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = -3
Query: 400 DPQQP-AEPVYYICGDCGMEIPLKPNDVIQCRECGYRILYKKRTRRIVQYEAR 245
D Q P +P+ YICG+C E +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 6 DVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit
RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=2 SV=2
Length = 63
Score = 65 bits (156), Expect = 2e-010
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = -3
Query: 406 SMDPQQPAEPVYYICGDCGMEIPLKPNDVIQCRECGYRILYKKRTRRIVQYEAR 245
+ +P +PA + Y+C DCG ++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 11 AFNPPRPATMI-YLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III subunit
rpabc4 OS=Dictyostelium discoideum GN=polr2k PE=3 SV=1
Length = 46
Score = 63 bits (152), Expect = 7e-010
Identities = 23/45 (51%), Positives = 36/45 (80%)
Frame = -3
Query: 379 PVYYICGDCGMEIPLKPNDVIQCRECGYRILYKKRTRRIVQYEAR 245
P YICG+CG E +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,748,393,089
Number of Sequences: 462764
Number of Extensions: 3748393089
Number of Successful Extensions: 40737119
Number of sequences better than 0.0: 0
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