BLASTX 7.6.2
Query= RU03364 /QuerySize=1106
(1105 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis tha... 92 4e-018
sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT... 90 2e-017
sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=... 80 2e-014
sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT... 74 1e-012
sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoen... 60 2e-008
sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis tha... 54 2e-006
>sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3
PE=1 SV=2
Length = 294
Score = 92 bits (228), Expect = 4e-018
Identities = 53/101 (52%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Frame = -3
Query: 479 KVDGSNKRAAE--SSKTPV-QKKAKFVTPEKTSGKKGAVHTATPYPSKQALKRP--ANTD 315
K + KR+AE SSK P KKAKFVTP+KT KK VH ATP+PSKQA K +T
Sbjct: 193 KPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTG 252
Query: 314 QTKLQSSKSSGGGTFRCDPCNRSFNSDGALQSHTKAKHGAA 192
+T Q G F C C R+F S+ LQSHTKAKH AA
Sbjct: 253 ETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAA 293
>sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1
Length = 303
Score = 90 bits (222), Expect = 2e-017
Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 8/99 (8%)
Frame = -3
Query: 479 KVDGSNKRAAESS-KTPV-QKKAKFVTP--EKTSGKKGAVHTATPYPSKQALKRPANTDQ 312
K + KR AE++ KTP+ KKAK TP +KT GKKGA H ATP+P+K K PAN D+
Sbjct: 208 KPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAKG--KTPANNDK 265
Query: 311 TKLQSSKSSGGGTFRCDPCNRSFNSDGALQSHTKAKHGA 195
+S KS GG+ C C+++FNS+ ALQ+H+KAKHGA
Sbjct: 266 LTEKSPKS--GGSVPCKSCSKTFNSEMALQAHSKAKHGA 302
>sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1
Length = 295
Score = 80 bits (197), Expect = 2e-014
Identities = 49/96 (51%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Frame = -3
Query: 479 KVDGSNKRAAES-SKTPVQ-KKAKFVTPEKTSGKKGAVHTATPYPSKQALKRPANTDQTK 306
KVD KR ES +KTP+ KKAK TPEKT GKK +VH ATP+PSK+ K P + TK
Sbjct: 204 KVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKK-SVHVATPHPSKKGGKTP---NSTK 259
Query: 305 LQSSKSSGGGTFRCDPCNRSFNSDGALQSHTKAKHG 198
Q+ S+ G C C +SF ++ LQ H KAKHG
Sbjct: 260 GQTPNSA--GQLSCASCKKSFTNEAGLQQHKKAKHG 293
>sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1
Length = 300
Score = 74 bits (180), Expect = 1e-012
Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Frame = -3
Query: 479 KVDGSNKRAAESS--KTPV-QKKAKFVTP--EKTSGKKG-AVHTATPYPSKQALKRPANT 318
K + KRAAESS KTP+ KKAK TP +KT GKKG AVH ATP+P+K K N
Sbjct: 202 KPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAKG--KTIVNN 259
Query: 317 DQTKLQSSKSSGGGTFRCDPCNRSFNSDGALQSHTKAKHG 198
D++ ++S KS+ C C++SF S+ A Q+H+KAKHG
Sbjct: 260 DKS-VKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHG 298
>sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2
SV=1
Length = 269
Score = 60 bits (145), Expect = 2e-008
Identities = 32/95 (33%), Positives = 45/95 (47%)
Frame = -3
Query: 473 DGSNKRAAESSKTPVQKKAKFVTPEKTSGKKGAVHTATPYPSKQALKRPANTDQTKLQSS 294
D S + + ++ ++KA T + KK + T K+ A +K S
Sbjct: 175 DDSEEETPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASK 234
Query: 293 KSSGGGTFRCDPCNRSFNSDGALQSHTKAKHGAAK 189
G+ C PCNRSF S+GAL SH+KAKH A K
Sbjct: 235 TPKSAGSHHCKPCNRSFGSEGALDSHSKAKHSAGK 269
>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2
PE=1 SV=2
Length = 306
Score = 54 bits (127), Expect = 2e-006
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Frame = -3
Query: 467 SNKRAAES-SKTPVQ-KKAK-----FVTPEKTSGKKGAVHTATPYPSKQALKRPANTDQT 309
+ KR ES SKTPV KKAK TP+KT KK HTATP+P+K+ K P N +Q+
Sbjct: 207 NKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQS 266
Query: 308 KLQSSKSSGG 279
+SSGG
Sbjct: 267 PKSGGQSSGG 276
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,073,084,167
Number of Sequences: 462764
Number of Extensions: 6073084167
Number of Successful Extensions: 56121479
Number of sequences better than 0.0: 0
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