BLASTX 7.6.2
Query= RU03701 /QuerySize=1595
(1594 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator ... 216 4e-055
sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.0... 148 2e-034
sp|Q4KM14|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1... 142 7e-033
sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN... 94 2e-018
sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=... 89 1e-016
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie... 78 1e-013
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul... 78 1e-013
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve... 78 1e-013
sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=r... 77 4e-013
sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RB... 76 6e-013
sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=... 76 6e-013
sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=... 76 6e-013
sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus ... 76 6e-013
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 75 1e-012
sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropical... 75 1e-012
sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis G... 72 9e-012
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 69 6e-011
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 68 1e-010
sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-ind... 67 2e-010
sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 66 5e-010
sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabi... 66 7e-010
sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi... 66 7e-010
sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus ... 65 9e-010
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 65 9e-010
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor 64 kDa subunit... 64 3e-009
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit... 64 3e-009
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit... 64 3e-009
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1
Length = 632
Score = 216 bits (549), Expect = 4e-055
Identities = 114/290 (39%), Positives = 165/290 (56%), Gaps = 10/290 (3%)
Frame = -3
Query: 1289 GSDEIRSLWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPE--GYGFIEFRTRS 1116
GS +LW+GDL PWMD +I + E VN KV+R+K + Y F++F + +
Sbjct: 80 GSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSA 139
Query: 1115 AAEQVLQNYNGTVMPSTEQNFRLNWATLGAGERRQ--DDGPDYTVFVGDLAADVTDYTLQ 942
AAE+ L YN T++P F+LNWAT G + P++++FVGDL D L
Sbjct: 140 AAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLF 199
Query: 941 ETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPA 762
TFR+ Y S AK++ D TG S+ YGFVRF E EQ A+ M G C RP+RI A
Sbjct: 200 MTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
Query: 761 ATKKPVGGGQPFQKAAYPSSQGN--PGE----ADPNNTTIFVGGLDPSVDDEMLRQSFGM 600
+ K P+S N P + DP NTT+FVGGL ++ ++ L+ F
Sbjct: 260 SPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQP 319
Query: 599 FGELVHVKIPVGKRCGFVQFANRACAEQALSVMNGRVVGSQSVRLSWGRS 450
FG ++++KIP GK CGFVQ++ ++ AE+A++ M G +VG+ +RL+WG +
Sbjct: 320 FGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 148 bits (371), Expect = 2e-034
Identities = 72/174 (41%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
Frame = -3
Query: 1271 SLWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPEGYGFIEFRTRSAAEQVLQN 1092
+LW+G+L PW+ E +I + G+AV K+IRN+ TG+ GY F+EF + A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 1091 YNGTVMPSTEQNFRLNWATLGA-GERRQDDGPDYTVFVGDLAADVTDYTLQETFRAHYHS 915
N +P T F+LNWA+ G E+ +Y++FVGDL+ +V ++ + F + Y+S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 914 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPAATK 753
K AK++TD T S+GYGFVRF DE++Q A+ EM GQ C RP+R+G A K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 92 bits (227), Expect = 9e-018
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = -3
Query: 713 YPSSQGNPGEADPNNTTIFVGGLDPSVDDEMLRQSFGMFGELVHVKIPVGKRCGFVQFAN 534
Y ++Q P AD N+T+FVGGL V +E L+ F FGE+V+VKIP GK CGFVQF N
Sbjct: 288 YSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVN 347
Query: 533 RACAEQALSVMNGRVVGSQSVRLSWGRS 450
R AE A++ + G +G+ +RLSWGR+
Sbjct: 348 RQSAEIAINQLQGYPLGNSRIRLSWGRN 375
>sp|Q4KM14|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 316
Score = 142 bits (357), Expect = 7e-033
Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Frame = -3
Query: 1283 DEIRSLWIGDLLPWMDENYILNCFGPTGE-AVNAKVIRNKQTGLPEGYGFIEFRTRSAAE 1107
+ + SLW+GDL P+MDEN+I F GE A K+I ++ TG GY F+E ++ +
Sbjct: 3 NRMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVD 62
Query: 1106 QVLQNYNGTVMPSTE--QNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTLQETF 933
+ +Q NG ++P + + F+LN+AT G +R + GP+++VFVGDL ++V DY L + F
Sbjct: 63 RCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFF 119
Query: 932 RAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNE-MNGQFCSSRPMRIGPAAT 756
+ S KGAKVVTD G S+GYGFV+F DE+EQ +A+ E N +P+RI A
Sbjct: 120 LKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVN 178
Query: 755 K 753
K
Sbjct: 179 K 179
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1
SV=2
Length = 523
Score = 94 bits (233), Expect = 2e-018
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Frame = -3
Query: 1151 EGYGFIEFRTRSAAEQVLQNYNGTVMPS-TEQNFRLNWATLGAGERRQD-----DGPDYT 990
+GY F++F + + A L NG ++P+ + +LNWAT G + +
Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 989 VFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNE 810
+FVGDLA +VT+ L E F Y S AK+V D+ TG SKGYGFV+F + EQ A++E
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 809 MNGQFCSSRPMRIGP-AATKKPVGGGQPFQKAA 714
M G F + R +++GP + ++ V G + +++
Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSS 257
Score = 91 bits (225), Expect = 1e-017
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = -3
Query: 680 DPNNTTIFVGGLDPSVDDEMLRQSFGMFGELVHVKIPVGKRCGFVQFANRACAEQALSVM 501
DPNNTT+F+GGL V ++ LR F FG +V+VKIPVGK CGFVQ+ +R AE A++ M
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 500 NGRVVGSQSVRLSWGRS 450
G + + VRLSWGRS
Sbjct: 369 QGFPIANSRVRLSWGRS 385
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces
cerevisiae GN=NGR1 PE=1 SV=2
Length = 672
Score = 89 bits (218), Expect = 1e-016
Identities = 43/112 (38%), Positives = 68/112 (60%)
Frame = -3
Query: 1088 NGTVMPSTEQNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTLQETFRAHYHSVK 909
N P+ ++ FRLNWA+ + P++++FVGDL+ T+ L F+ + SVK
Sbjct: 161 NSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVK 220
Query: 908 GAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPAATK 753
+V+TD TG S+ +GFVRFGDE E+ RA+ EM+G++ R +R+ A +
Sbjct: 221 TVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
Score = 87 bits (213), Expect = 4e-016
Identities = 42/89 (47%), Positives = 54/89 (60%)
Frame = -3
Query: 707 SSQGNPGEADPNNTTIFVGGLDPSVDDEMLRQSFGMFGELVHVKIPVGKRCGFVQFANRA 528
S N DP NTT+FVGGL P + LR F FG +++V+IP GK CGFV+F R
Sbjct: 347 SLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRI 406
Query: 527 CAEQALSVMNGRVVGSQSVRLSWGRSPSS 441
AE ++ + G +VG +RLSWGR SS
Sbjct: 407 DAEASIQGLQGFIVGGSPIRLSWGRPSSS 435
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4
PE=1 SV=1
Length = 424
Score = 78 bits (191), Expect = 1e-013
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Frame = -3
Query: 1271 SLWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPEGYGFIEFRTRSAAEQVLQN 1092
++++G L + E + F G VN + +++ TG +GYGF+EF + A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 1091 YNGTVMPSTEQNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTLQETFRAHYHSV 912
N ++ + R+N A+ A + D G + +F+G+L ++ + L +TF A +
Sbjct: 74 MN--MIKLYGKPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 911 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPAATKKPVG 741
+ K++ D TG SKGY F+ F A+ MNGQ+ +RP+ + A K G
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 78 bits (191), Expect = 1e-013
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Frame = -3
Query: 1271 SLWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPEGYGFIEFRTRSAAEQVLQN 1092
++++G L + E + F G VN + +++ TG +GYGF+EF + A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 1091 YNGTVMPSTEQNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTLQETFRAHYHSV 912
N ++ + R+N A+ A + D G + +F+G+L ++ + L +TF A +
Sbjct: 74 MN--MIKLYGKPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 911 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPAATKKPVG 741
+ K++ D TG SKGY F+ F A+ MNGQ+ +RP+ + A K G
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 78 bits (191), Expect = 1e-013
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Frame = -3
Query: 1271 SLWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPEGYGFIEFRTRSAAEQVLQN 1092
++++G L + E + F G VN + +++ TG +GYGF+EF + A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 1091 YNGTVMPSTEQNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTLQETFRAHYHSV 912
N ++ + R+N A+ A + D G + +F+G+L ++ + L +TF A +
Sbjct: 74 MN--MIKLYGKPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 911 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGPAATKKPVG 741
+ K++ D TG SKGY F+ F A+ MNGQ+ +RP+ + A K G
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 77 bits (187), Expect = 4e-013
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
D+ +F GDL +V D L F + Y S AKVV D+ TG++KGYGFV F D ++ +RA
Sbjct: 302 DFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 818 MNEMNGQFCSSRPMRIGPAATK 753
M EMNG++ SRP+++ +A K
Sbjct: 361 MREMNGRYVGSRPIKLRKSAWK 382
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 76 bits (185), Expect = 6e-013
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = -3
Query: 1007 DGPDYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 828
D D+ +F GDL +V D L F + + S AKV+ D+ TG++KGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 827 LRAMNEMNGQFCSSRPMRI 771
+RAM EMNG++ SRP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=2
SV=1
Length = 480
Score = 76 bits (185), Expect = 6e-013
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = -3
Query: 1007 DGPDYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 828
D D+ +F GDL +V D L F + + S AKV+ D+ TG++KGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 827 LRAMNEMNGQFCSSRPMRI 771
+RAM EMNG++ SRP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=2
SV=1
Length = 474
Score = 76 bits (185), Expect = 6e-013
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = -3
Query: 1007 DGPDYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 828
D D+ +F GDL +V D L F + + S AKV+ D+ TG++KGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 827 LRAMNEMNGQFCSSRPMRI 771
+RAM EMNG++ SRP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=2
SV=1
Length = 474
Score = 76 bits (185), Expect = 6e-013
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = -3
Query: 1007 DGPDYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 828
D D+ +F GDL +V D L F + + S AKV+ D+ TG++KGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 827 LRAMNEMNGQFCSSRPMRI 771
+RAM EMNG++ SRP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 273
Score = 75 bits (183), Expect = 1e-012
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Frame = -3
Query: 1268 LWIGDLLPWMDENYILNCFGPTGEAVNAKVIRNKQTGLPEGYGFIEFRTRSAAEQVLQNY 1089
+++G+L D + F G +VI +K TG G+GF+ ++ E Q +
Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 1088 NGTVM------------PSTEQNFRLNWATLGAGERRQDDGPDYTVFVGDLAADVTDYTL 945
NG + P +N + G G + V+VG+LA V D
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSN----RVYVGNLAWGV-DQDA 203
Query: 944 QETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNEMNGQFCSSRPMRIGP 765
ET + V AKVV DR +GRS+G+GFV + E A+ ++G + R +R+ P
Sbjct: 204 LETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSP 263
Query: 764 AATKKP 747
A + P
Sbjct: 264 AEARPP 269
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42
PE=2 SV=1
Length = 392
Score = 75 bits (182), Expect = 1e-012
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = -3
Query: 1007 DGPDYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 828
+ D+ +F GDL +V D L F + Y S AKV+ D+ TG++KGYGFV F D ++
Sbjct: 289 ESDDFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDY 347
Query: 827 LRAMNEMNGQFCSSRPMRI 771
+RAM EMNG++ SRP+++
Sbjct: 348 VRAMREMNGKYVGSRPIKL 366
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2
SV=1
Length = 392
Score = 72 bits (175), Expect = 9e-012
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
D+ +F GDL +V D L F + Y S AKV+ D+ TG++KGYGFV F D ++ +RA
Sbjct: 292 DFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 818 MNEMNGQFCSSRPMRI 771
EMNG++ SRP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial
OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1
Length = 158
Score = 69 bits (168), Expect = 6e-011
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Frame = -3
Query: 989 VFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMNE 810
+F+G L+ D +L++ F AH+ V AKV+ DR TGRS+G+GFV F DE A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 809 MNGQFCSSRPMRIGPA----ATKKPVGGG 735
M+G+ + R +R+ PA + + GGG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor
GN=GRP2 PE=2 SV=1
Length = 168
Score = 68 bits (165), Expect = 1e-010
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA + TL++ F A++ V +KV+TDR TGRS+G+GFV F E L A
Sbjct: 7 EYRCFVGGLAWATNNETLEQAF-ANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDA 65
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ MNG+ R + + A ++ GGG
Sbjct: 66 IENMNGKELDGRNITVNQAQSRGGGGGG 93
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein
OS=Zea mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 67 bits (163), Expect = 2e-010
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA ++ +L+ F A Y + +KV+TDR TGRS+G+GFV F E+ L A
Sbjct: 7 EYRCFVGGLAWATSNESLENAF-ASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDA 65
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ MNG+ R + + A ++ GGG
Sbjct: 66 IENMNGKELDGRNITVNQAQSRGGGGGG 93
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus
GN=GRP10 PE=2 SV=1
Length = 169
Score = 66 bits (160), Expect = 5e-010
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA D L+ TF + + V +K++ DR TGRS+G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATGDAELERTF-SQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDA 63
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
++EMNG+ R + + A ++ GGG
Sbjct: 64 IDEMNGKELDGRTITVNEAQSRGGGGGG 91
>sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=GRP7 PE=1 SV=1
Length = 176
Score = 66 bits (159), Expect = 7e-010
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA D L+ F A Y V +K++ DR TGRS+G+GFV F DE A
Sbjct: 7 EYRCFVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ MNGQ R + + A ++ GGG
Sbjct: 66 IEGMNGQDLDGRSITVNEAQSRGSGGGG 93
>sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=GRP8 PE=1 SV=1
Length = 169
Score = 66 bits (159), Expect = 7e-010
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA D LQ TF + + V +K++ DR +GRS+G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ EMNG+ R + + A ++ GGG
Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGSGGGG 91
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2
SV=1
Length = 157
Score = 65 bits (158), Expect = 9e-010
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA D +L++ F + + + +K++ DR TGRS+G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDESLEQAF-SQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDA 63
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ MNGQ R + + A ++ GGG
Sbjct: 64 IEGMNGQELDGRNITVNEAQSRGSGGGG 91
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba
PE=2 SV=1
Length = 166
Score = 65 bits (158), Expect = 9e-010
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = -3
Query: 998 DYTVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRA 819
+Y FVG LA D L+ F + Y V +K++ DR TGRS+G+GFV F DE A
Sbjct: 7 EYRCFVGGLAWATDDRALETAF-SQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65
Query: 818 MNEMNGQFCSSRPMRIGPAATKKPVGGG 735
+ MNGQ R + + A ++ GGG
Sbjct: 66 IEGMNGQDLDGRSITVNEAQSRGSGGGG 93
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor 64 kDa subunit OS=Mus
musculus GN=Cstf2 PE=1 SV=2
Length = 580
Score = 64 bits (154), Expect = 3e-009
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Frame = -3
Query: 992 TVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMN 813
+VFVG++ + T+ L++ F + V ++V DR TG+ KGYGF + D+ L AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 812 EMNGQFCSSRPMRIGPAATK------KPVGGGQPFQKAAYPSSQGNPGEADPNNTTIFVG 651
+NG+ S R +R+ AA++ K +G G P ++ Y S +P +A P + + V
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESI-SPEDA-PESISKAVA 133
Query: 650 GLDPSVDDEMLRQ 612
L P E+++Q
Sbjct: 134 SLPPEQMFELMKQ 146
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor 64 kDa subunit, tau variant
OS=Homo sapiens GN=CSTF2T PE=1 SV=1
Length = 616
Score = 64 bits (154), Expect = 3e-009
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Frame = -3
Query: 992 TVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMN 813
+VFVG++ + T+ L++ F + SV ++V DR TG+ KGYGF + D+ L AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 812 EMNGQFCSSRPMRIGPAATK------KPVGGGQPFQKAAYPSSQGNP--GEADPNNTTIF 657
+NG+ S R +R+ AA++ K +G P + Y G+P E P + T
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY----GDPIDPEDAPESITRA 131
Query: 656 VGGLDPSVDDEMLRQ 612
V L P E+++Q
Sbjct: 132 VASLPPEQMFELMKQ 146
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit, tau variant
OS=Mus musculus GN=Cstf2t PE=1 SV=2
Length = 632
Score = 64 bits (154), Expect = 3e-009
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Frame = -3
Query: 992 TVFVGDLAADVTDYTLQETFRAHYHSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMN 813
+VFVG++ + T+ L++ F + SV ++V DR TG+ KGYGF + D+ L AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 812 EMNGQFCSSRPMRIGPAATK------KPVGGGQPFQKAAYPSSQGNP--GEADPNNTTIF 657
+NG+ S R +R+ AA++ K +G P + Y G+P E P + T
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY----GDPIDPEDAPESITRA 131
Query: 656 VGGLDPSVDDEMLRQ 612
V L P E+++Q
Sbjct: 132 VASLPPEQMFELMKQ 146
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,073,084,167
Number of Sequences: 462764
Number of Extensions: 6073084167
Number of Successful Extensions: 56121479
Number of sequences better than 0.0: 0
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