BLASTX 7.6.2
Query= RU04514 /QuerySize=356
(355 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE... 62 8e-010
sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1 61 1e-009
sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=M... 58 9e-009
sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1 57 2e-008
sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1 55 8e-008
sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus g... 50 2e-006
sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus g... 49 5e-006
sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taur... 49 5e-006
sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sap... 49 5e-006
sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musc... 49 5e-006
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 62 bits (148), Expect = 8e-010
Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 4/42 (9%)
Frame = +3
Query: 234 ERPSRR----RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
E+P+ + +A KDPNKPKR PSAFFVF+G+FREEFK+KNP
Sbjct: 24 EKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNP 65
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 61 bits (147), Expect = 1e-009
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +3
Query: 234 ERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
++P++ + KDPNKPKRPPSAFFVF+ FRE++KK +PN
Sbjct: 31 KKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPN 69
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 58 bits (139), Expect = 9e-009
Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 3/41 (7%)
Frame = +3
Query: 234 ERPSRRR---AKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
E+P++ R A KDPNKPKR PSAFFVF+ +FR+EFK+KNP
Sbjct: 24 EKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNP 64
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 57 bits (137), Expect = 2e-008
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +3
Query: 228 AKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
A + ++A KDPNKPKRPPSAFFVF+ FR+ +K+K+PN
Sbjct: 20 AADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPN 60
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 55 bits (131), Expect = 8e-008
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = +3
Query: 228 AKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNP 347
A++ + +A KDPNKPKRPPSAFFVF+ +FR+ F K++P
Sbjct: 28 ARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHP 67
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3
PE=2 SV=2
Length = 202
Score = 50 bits (119), Expect = 2e-006
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 252 RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+ KKDPN PKRPPSAFF+F +FR + K NP +
Sbjct: 85 KKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1
PE=2 SV=2
Length = 201
Score = 49 bits (115), Expect = 5e-006
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 252 RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+ KKDPN PKRPPS FF+F +FR + K NP +
Sbjct: 84 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3
PE=2 SV=2
Length = 200
Score = 49 bits (115), Expect = 5e-006
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 252 RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+ KKDPN PKRPPS FF+F +FR + K NP +
Sbjct: 85 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3
PE=1 SV=4
Length = 200
Score = 49 bits (115), Expect = 5e-006
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 252 RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+ KKDPN PKRPPS FF+F +FR + K NP +
Sbjct: 85 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3
PE=2 SV=3
Length = 200
Score = 49 bits (115), Expect = 5e-006
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 252 RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+ KKDPN PKRPPS FF+F +FR + K NP +
Sbjct: 85 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,423,807,684
Number of Sequences: 462764
Number of Extensions: 6423807684
Number of Successful Extensions: 63594173
Number of sequences better than 0.0: 0
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