BLASTX 7.6.2
Query= RU04905 /QuerySize=956
(955 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Or... 85 5e-016
sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Or... 84 1e-015
sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos... 68 9e-011
sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Hom... 68 9e-011
sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus... 68 9e-011
sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Dro... 67 2e-010
sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Sch... 64 2e-009
sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos... 62 5e-009
sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus... 62 5e-009
sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattu... 62 5e-009
sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Hom... 61 1e-008
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa
subsp. japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 85 bits (209), Expect = 5e-016
Identities = 36/41 (87%), Positives = 40/41 (97%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K+I
Sbjct: 136 GRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEI 176
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa
subsp. japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 84 bits (206), Expect = 1e-015
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I
Sbjct: 136 GRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQI 176
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus
GN=U2AF1 PE=2 SV=1
Length = 237
Score = 68 bits (164), Expect = 9e-011
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK I
Sbjct: 137 GQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens
GN=U2AF1 PE=1 SV=3
Length = 240
Score = 68 bits (164), Expect = 9e-011
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK I
Sbjct: 137 GQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus
GN=U2af1 PE=2 SV=4
Length = 239
Score = 68 bits (164), Expect = 9e-011
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK I
Sbjct: 137 GQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila
melanogaster GN=U2af38 PE=1 SV=2
Length = 264
Score = 67 bits (161), Expect = 2e-010
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK I
Sbjct: 139 GRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPI 179
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit
OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 64 bits (153), Expect = 2e-009
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -3
Query: 770 RPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKK 654
RP+ + SPVTDFREA CRQ+E + C RGG CNFMH KK
Sbjct: 132 RPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKK 170
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus
GN=U2AF1L4 PE=2 SV=1
Length = 220
Score = 62 bits (149), Expect = 5e-009
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ I
Sbjct: 137 GQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus
GN=U2af1l4 PE=1 SV=1
Length = 220
Score = 62 bits (149), Expect = 5e-009
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ I
Sbjct: 137 GQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus
GN=U2af1l4 PE=2 SV=1
Length = 220
Score = 62 bits (149), Expect = 5e-009
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ I
Sbjct: 137 GQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens
GN=U2AF1L4 PE=1 SV=2
Length = 220
Score = 61 bits (146), Expect = 1e-008
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -3
Query: 773 GRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 651
G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ I
Sbjct: 137 GQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,147,223
Number of Sequences: 462764
Number of Extensions: 8390147223
Number of Successful Extensions: 74969301
Number of sequences better than 0.0: 0
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