BLASTX 7.6.2
Query= RU05967 /QuerySize=1010
(1009 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=... 137 2e-031
sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=... 137 2e-031
sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RB... 135 6e-031
sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melan... 127 1e-028
sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.0... 98 9e-020
sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3... 61 9e-009
sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3... 60 3e-008
sp|Q29RT0|HNRPG_BOVIN Heterogeneous nuclear ribonucleoprotein G ... 53 2e-006
sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=B... 52 4e-006
sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=H... 52 4e-006
sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=M... 52 4e-006
sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=P... 52 4e-006
sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rat... 52 4e-006
sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4... 52 5e-006
>sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1
SV=1
Length = 174
Score = 137 bits (343), Expect = 2e-031
Identities = 66/125 (52%), Positives = 87/125 (69%), Gaps = 6/125 (4%)
Frame = -3
Query: 767 KKTKGRGFREDPNAERNTRLAVSDLDGLNALDGLE--PQRSIEGWIILVTGIHEEAQEDD 594
KK KGRGF + + R D D + DG E PQRS+EGWI+ VTG+HEEA E+D
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQ-DGDEPGPQRSVEGWILFVTGVHEEATEED 88
Query: 593 LHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDGNSVLTQIVNVDW 414
+H F E+GEIKN+HLNLDRRTG++KGY L+EYE + EAQAA+ ++G ++ Q ++VDW
Sbjct: 89 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
Query: 413 AFSNG 399
F G
Sbjct: 149 CFVRG 153
>sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=2
SV=2
Length = 174
Score = 137 bits (343), Expect = 2e-031
Identities = 66/125 (52%), Positives = 87/125 (69%), Gaps = 6/125 (4%)
Frame = -3
Query: 767 KKTKGRGFREDPNAERNTRLAVSDLDGLNALDGLE--PQRSIEGWIILVTGIHEEAQEDD 594
KK KGRGF + + R D D + DG E PQRS+EGWI+ VTG+HEEA E+D
Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQ-DGDEPGPQRSVEGWILFVTGVHEEATEED 88
Query: 593 LHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDGNSVLTQIVNVDW 414
+H F E+GEIKN+HLNLDRRTG++KGY L+EYE + EAQAA+ ++G ++ Q ++VDW
Sbjct: 89 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
Query: 413 AFSNG 399
F G
Sbjct: 149 CFVRG 153
>sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=1
Length = 173
Score = 135 bits (338), Expect = 6e-031
Identities = 66/125 (52%), Positives = 87/125 (69%), Gaps = 7/125 (5%)
Frame = -3
Query: 767 KKTKGRGFREDPNAERNTRLAVSDLDGLNALDGLE--PQRSIEGWIILVTGIHEEAQEDD 594
KK KGRGF + + R D D + DG E PQRS+EGWI+ VTG+HEEA E+D
Sbjct: 33 KKRKGRGFGSEGSRARMR----EDYDSVEQ-DGDEPGPQRSVEGWILFVTGVHEEATEED 87
Query: 593 LHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDGNSVLTQIVNVDW 414
+H F E+GEIKN+HLNLDRRTG++KGY L+EYE + EAQAA+ ++G ++ Q ++VDW
Sbjct: 88 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 147
Query: 413 AFSNG 399
F G
Sbjct: 148 CFVRG 152
>sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu
PE=1 SV=1
Length = 165
Score = 127 bits (318), Expect = 1e-028
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 8/127 (6%)
Frame = -3
Query: 767 KKTKGRGFREDPNAERNTRLAVSDLDGLNALDGLE----PQRSIEGWIILVTGIHEEAQE 600
K KGRGF D NTR A+ + + D E PQRS+EGWI+ VT IHEEAQE
Sbjct: 31 KHRKGRGFGSD----SNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQE 86
Query: 599 DDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDGNSVLTQIVNV 420
D++ F ++GEIKN+HLNLDRRTGF KGYAL+EYE +A AA ++G ++ Q + V
Sbjct: 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146
Query: 419 DWAFSNG 399
DW F G
Sbjct: 147 DWCFVKG 153
>sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.09
OS=Schizosaccharomyces pombe GN=SPAC23A1.09 PE=2 SV=1
Length = 121
Score = 98 bits (242), Expect = 9e-020
Identities = 46/87 (52%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Frame = -3
Query: 668 LEPQRSIEGWIILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYEN 489
+ P +S+EG+II+VTG+H EA E+ + F +FG +KNLHLNLDRRTG+VKGYALIEY
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
Query: 488 FAEAQAAISRMDGNSVLTQIVNVDWAF 408
+AQ A+ + S+L + + VD+AF
Sbjct: 61 LEQAQKAVDEKN-LSLLDEKLEVDFAF 86
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G
OS=Ustilago maydis GN=TIF35 PE=3 SV=1
Length = 308
Score = 61 bits (147), Expect = 9e-009
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = -3
Query: 629 VTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDG 450
VT + E+A +DDL F FG + +++ DR TG KGYA + +EN +A A ++DG
Sbjct: 229 VTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFVSFENREDADRARQKVDG 288
Query: 449 NSVLTQIVNVDWAFSNG 399
I++ W+ G
Sbjct: 289 RGYDNLILSCQWSLPRG 305
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G
OS=Yarrowia lipolytica GN=TIF35 PE=3 SV=1
Length = 294
Score = 60 bits (143), Expect = 3e-008
Identities = 29/73 (39%), Positives = 45/73 (61%)
Frame = -3
Query: 629 VTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRMDG 450
VT + EEA +DDL FG++G I +++ DR TG +G+A + Y + AQAA+ MDG
Sbjct: 218 VTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAMDG 277
Query: 449 NSVLTQIVNVDWA 411
+ I+ VD++
Sbjct: 278 HGFDNLIMKVDYS 290
>sp|Q29RT0|HNRPG_BOVIN Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus
GN=RBMX PE=2 SV=1
Length = 396
Score = 53 bits (126), Expect = 2e-006
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
+ + G++ E E L ATFG++G I + L DR T +G+A I +E+ A+A+AA+ M
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 455 DGNSVLTQIVNV 420
+G S+ + + V
Sbjct: 70 NGKSLDGKAIKV 81
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus
GN=PUF60 PE=2 SV=1
Length = 530
Score = 52 bits (124), Expect = 4e-006
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
I V +H++ +DD+ + F FG+IK+ L D TG KGY IEYE +Q A+S M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 455 D 453
+
Sbjct: 259 N 259
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens
GN=PUF60 PE=1 SV=1
Length = 559
Score = 52 bits (124), Expect = 4e-006
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
I V +H++ +DD+ + F FG+IK+ L D TG KGY IEYE +Q A+S M
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 455 D 453
+
Sbjct: 288 N 288
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus
GN=Puf60 PE=2 SV=2
Length = 564
Score = 52 bits (124), Expect = 4e-006
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
I V +H++ +DD+ + F FG+IK+ L D TG KGY IEYE +Q A+S M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 455 D 453
+
Sbjct: 293 N 293
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii
GN=PUF60 PE=2 SV=1
Length = 558
Score = 52 bits (124), Expect = 4e-006
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
I V +H++ +DD+ + F FG+IK+ L D TG KGY IEYE +Q A+S M
Sbjct: 227 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 286
Query: 455 D 453
+
Sbjct: 287 N 287
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus
GN=Puf60 PE=2 SV=2
Length = 564
Score = 52 bits (124), Expect = 4e-006
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = -3
Query: 635 ILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFAEAQAAISRM 456
I V +H++ +DD+ + F FG+IK+ L D TG KGY IEYE +Q A+S M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 455 D 453
+
Sbjct: 293 N 293
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella
zeae GN=CYP6 PE=3 SV=1
Length = 605
Score = 52 bits (123), Expect = 5e-006
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Frame = -3
Query: 890 DDDLMDEDGAVDAEPSASPRAPLPKLKSAITGASSASLSAPKKTKGRGFREDPNAERNTR 711
DD D G EPS SP +LK+ +A + R N E +
Sbjct: 174 DDPYADPPGL--REPSTSPPPTDQQLKTVRIADEAALHEDDNVDEEELERRRRNREAQAQ 231
Query: 710 LAVSDLDGLNALDGLEPQRSIEGWIILVTGIHEEAQEDDLHATFGEFGEIKNLHLNLDRR 531
++ G ++P + ++ V ++ ++DL FG FG+I + + D++
Sbjct: 232 ALTLEMMGDLPFAEVKPPEN----VLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQK 287
Query: 530 TGFVKGYALIEYENFAEAQAAISRMDGNSVLTQIVNVDWAFSNGSFLDGSKK 375
TG YA IEYE+ A +AA +M G + + ++VD++ S D +K
Sbjct: 288 TGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHVDFSQSVSKLSDVWRK 339
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,076,592,653
Number of Sequences: 462764
Number of Extensions: 9076592653
Number of Successful Extensions: 89107062
Number of sequences better than 0.0: 0
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