BLASTX 7.6.2
Query= RU06952 /QuerySize=950
(949 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT... 67 1e-010
sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT... 66 3e-010
sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=... 64 1e-009
sp|O24591|HDT1_MAIZE Histone deacetylase HDT1 OS=Zea mays GN=HDT... 63 2e-009
sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis tha... 60 2e-008
sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoen... 56 3e-007
>sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1
Length = 303
Score = 67 bits (163), Expect = 1e-010
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +1
Query: 400 KRAQVSGSVKTPVSAKKAKIVASTPQKTDGKKGG-HTDTPHPAKKGKTPATDKSKTQTPK 576
K+ ++KTP+S KKAK+ QKT GKKG H TPHPA KGKTPA + T+
Sbjct: 213 KKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPA-KGKTPANNDKLTEKSP 271
Query: 577 SAXXXXXXXXXXXXXXXXXALQSHNKAKHSA 669
+ ALQ+H+KAKH A
Sbjct: 272 KSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302
>sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1
Length = 300
Score = 66 bits (160), Expect = 3e-010
Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAKIVASTPQKTDGKKGG--HTDTPHPAKKGKTPATDKSKTQT 570
KKRA S +KTP+S KKAK+ + QKT GKKG H TPHPA KGKT + ++
Sbjct: 207 KKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPA-KGKTIVNNDKSVKS 265
Query: 571 PKSA-XXXXXXXXXXXXXXXXXALQSHNKAKH 663
PKSA A Q+H+KAKH
Sbjct: 266 PKSAPKSGVPCKSCSKSFISETAPQAHSKAKH 297
>sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1
Length = 295
Score = 64 bits (155), Expect = 1e-009
Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 6/63 (9%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAKIVASTPQKTDGKKGGHTDTPHPAKK-GKTPATDKSKTQTP 573
KKR S + KTP+SAKKAK +TP+KTDGKK H TPHP+KK GKTP + +K QTP
Sbjct: 209 KKRPNES-AAKTPISAKKAK--TATPEKTDGKKSVHVATPHPSKKGGKTP--NSTKGQTP 263
Query: 574 KSA 582
SA
Sbjct: 264 NSA 266
>sp|O24591|HDT1_MAIZE Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1
Length = 307
Score = 63 bits (152), Expect = 2e-009
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAKIVASTPQKTDGKKGG--HTDTPHPAKKGKTPATDKSKTQT 570
KKR S +KTP+S KKAK+ + QKT GKKG H TPHPA KGKT + ++
Sbjct: 207 KKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPA-KGKTIVNNDKSVKS 265
Query: 571 PKSAXXXXXX---XXXXXXXXXXXALQSHNKAKHSAGK 675
PKSA ALQ+H++AK A +
Sbjct: 266 PKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGASE 303
>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2
PE=1 SV=2
Length = 306
Score = 60 bits (144), Expect = 2e-008
Identities = 41/66 (62%), Positives = 45/66 (68%), Gaps = 9/66 (13%)
Frame = +1
Query: 397 KKRAQVSGSVKTPVSAKKAK---IVASTPQKT-DGKKGGHTDTPHPAKK-GKTPATDKSK 561
KKR S S KTPVS KKAK ASTPQKT + KKGGHT TPHPAKK GK+P +
Sbjct: 208 KKRPNESVS-KTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPV---NA 263
Query: 562 TQTPKS 579
Q+PKS
Sbjct: 264 NQSPKS 269
>sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2
SV=1
Length = 269
Score = 56 bits (134), Expect = 3e-007
Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Frame = +1
Query: 400 KRAQVSGSVKTPVSAKKAKIVASTPQKTDGKK-GGHTDTPHPAKK-GKTP 543
KR + + KTPV+ KKAK+ +TPQKTDGKK GGH TPHP+K+ KTP
Sbjct: 189 KRRKADSATKTPVTDKKAKL--TTPQKTDGKKGGGHVATPHPSKQASKTP 236
Score = 51 bits (121), Expect = 8e-006
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 ELSHNWKSGSVHFAGYQSVMGXXXXXXXXXXXXXXXXXXLPMIAAENGKVENAKPAIAKS 182
ELSHN KSGSV+F GY++ +P+ A +GK E + KS
Sbjct: 77 ELSHNLKSGSVYFFGYKAT-NPFEEEEDDEDDYDESDEDIPLTLANSGKPEPKE--AGKS 133
Query: 183 NAVKPESSGKQKVKIEEPIK 242
NA K +SGKQKV+I EP K
Sbjct: 134 NAGKDSASGKQKVRIVEPTK 153
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,513,639,154
Number of Sequences: 462764
Number of Extensions: 12513639154
Number of Successful Extensions: 124453114
Number of sequences better than 0.0: 0
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