BLASTX 7.6.2
Query= RU13456 /QuerySize=276
(275 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Air... 57 2e-008
sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIR... 56 4e-008
sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3... 54 2e-007
sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4... 52 5e-007
sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4... 52 5e-007
sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5... 52 5e-007
sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein M... 51 2e-006
sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing prote... 50 4e-006
sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain... 49 8e-006
>sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1
Length = 552
Score = 57 bits (137), Expect = 2e-008
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 SDDMCAVCGHDTGKMILCDGCPRAFHEACLNS--EWIPESDWHCPNC 263
++D CAVC HD G++I CDGCPRAFH ACL+ + IP W C C
Sbjct: 297 NEDECAVC-HDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCC 342
>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1
Length = 545
Score = 56 bits (134), Expect = 4e-008
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +3
Query: 129 SDDMCAVCGHDTGKMILCDGCPRAFHEACLNS--EWIPESDWHCPNC 263
++D CAVC D G++I CDGCPRAFH ACL+ IP W C +C
Sbjct: 295 NEDECAVC-RDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo
sapiens GN=CHD3 PE=1 SV=3
Length = 2000
Score = 54 bits (128), Expect = 2e-007
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 96 GQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEW--IPESDWHCPNC 263
G+ G D C VC G++ILCD CPRA+H CL+ E PE W CP+C
Sbjct: 367 GEEEVDGYETDHQDYCEVC-QQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo
sapiens GN=CHD4 PE=1 SV=1
Length = 1912
Score = 52 bits (124), Expect = 5e-007
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 114 GASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACL--NSEWIPESDWHCPNC 263
G D C VC G++ILCD CPRA+H CL + E PE W CP+C
Sbjct: 364 GYETDHQDYCEVC-QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 414
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus
musculus GN=Chd4 PE=1 SV=1
Length = 1915
Score = 52 bits (124), Expect = 5e-007
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 114 GASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACL--NSEWIPESDWHCPNC 263
G D C VC G++ILCD CPRA+H CL + E PE W CP+C
Sbjct: 357 GYETDHQDYCEVC-QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 407
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo
sapiens GN=CHD5 PE=2 SV=1
Length = 1954
Score = 52 bits (124), Expect = 5e-007
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 114 GASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEW--IPESDWHCPNC 263
G D C VC G++ILCD CPRA+H CL+ E PE W CP+C
Sbjct: 337 GYETDHQDYCEVC-QQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHC 387
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog
OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 51 bits (120), Expect = 2e-006
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 135 DMCAVCGHDTGKMILCDGCPRAFHEACLNSEW--IPESDWHCPNC 263
D C VC G++ILCD CPRA+H CL E PE W CP+C
Sbjct: 378 DYCEVC-QQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe GN=SPCC126.07c PE=2 SV=1
Length = 571
Score = 50 bits (117), Expect = 4e-006
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 141 CAVCGHD--TGKMILCDGCPRAFHEACLNSEWIPESDWHCPNC 263
C +CG ++LCDGC A+H CLN + +P +++CPNC
Sbjct: 125 CVICGRSDHAEVLLLCDGCDDAYHTYCLNMDAVPIEEFYCPNC 167
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A
OS=Homo sapiens GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 49 bits (114), Expect = 8e-006
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 141 CAVCGH--DTGKMILCDGCPRAFHEACLNS--EWIPESDWHCPNCR 266
C +C D M+LCDGC R H C+ + +PE DW CP CR
Sbjct: 1151 CKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPEGDWFCPECR 1196
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,147,680,677
Number of Sequences: 462764
Number of Extensions: 17147680677
Number of Successful Extensions: 155595402
Number of sequences better than 0.0: 0
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