BLASTX 7.6.2
Query= RU16763 /QuerySize=252
(251 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein... 136 4e-032
sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens G... 78 1e-014
sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens G... 74 1e-013
sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=... 74 2e-013
sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago... 73 3e-013
sp|Q5KB05|CWC24_CRYNE Pre-mRNA-splicing factor CWC24 OS=Cryptoco... 69 8e-012
sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyos... 61 2e-009
sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia... 59 8e-009
sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorh... 58 1e-008
sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericel... 58 1e-008
sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwc24 OS=Schizosa... 54 1e-007
sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharo... 54 1e-007
sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurosp... 54 2e-007
sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya g... 53 4e-007
sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida ... 53 4e-007
sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyvero... 52 7e-007
sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryom... 50 4e-006
>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza
sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1
Length = 326
Score = 136 bits (341), Expect = 4e-032
Identities = 60/75 (80%), Positives = 68/75 (90%)
Frame = +2
Query: 26 TGKSTGNEKLYKGLHGYTDHKAGFRRELTVASEKAGGSHGPLRASAHIRASTRFDYQPDI 205
+ +G+ ++YKG+HGYTD+KAGFRRE TV+SEKAGGSHGPLRASAHIR S RFDYQPDI
Sbjct: 133 SSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSARFDYQPDI 192
Query: 206 CKDYKETGYCGYGDS 250
CKDYKETGYCGYGDS
Sbjct: 193 CKDYKETGYCGYGDS 207
>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1
SV=3
Length = 322
Score = 78 bits (190), Expect = 1e-014
Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 7/82 (8%)
Frame = +2
Query: 8 EEALKGTGKSTGNEKLYKGLHGYTDHKAGFRRELTVASEKAG-GSHGPLRASAHIRASTR 184
+EAL+G ++ +Y+G+H Y + ++ ++ + +G GP+RA H+RA+ R
Sbjct: 135 QEALRG----REHDHIYRGIHSYLRYLK--PKDTSMGNSSSGMARKGPIRAPGHLRATVR 188
Query: 185 FDYQPDICKDYKETGYCGYGDS 250
+DYQPDICKDYKETG+CG+GDS
Sbjct: 189 WDYQPDICKDYKETGFCGFGDS 210
>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1
SV=1
Length = 343
Score = 74 bits (181), Expect = 1e-013
Identities = 32/70 (45%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Frame = +2
Query: 44 NEKLYKGLHGYTDHKAGFRRELTVASEKAG-GSHGPLRASAHIRASTRFDYQPDICKDYK 220
++K+Y+G++ Y + ++ ++ + +G GP+RA H+RA+ R+DYQPDICKDYK
Sbjct: 149 DDKIYRGINNYQKYMK--PKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYK 206
Query: 221 ETGYCGYGDS 250
ETG+CG+GDS
Sbjct: 207 ETGFCGFGDS 216
>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2
SV=1
Length = 343
Score = 74 bits (180), Expect = 2e-013
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Frame = +2
Query: 44 NEKLYKGLHGYTDHKAGFRRELTVASEKAG-GSHGPLRASAHIRASTRFDYQPDICKDYK 220
++K+Y+G++ Y K ++ ++ + +G GP+RA H+RA+ R+DYQPDICKDYK
Sbjct: 149 DDKIYRGINNY--QKFMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYK 206
Query: 221 ETGYCGYGDS 250
ETG+CG+GDS
Sbjct: 207 ETGFCGFGDS 216
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis
GN=CWC24 PE=3 SV=1
Length = 355
Score = 73 bits (178), Expect = 3e-013
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Frame = +2
Query: 17 LKGTGKSTGNEKLYKGLHGYTDHKAGFRRELTVASEKAGGSHGPLRASAHIRASTRFDYQ 196
LK TG ++ ++ LY+G Y A F R S GP+R + +R ++ DYQ
Sbjct: 144 LKETGVTSNSDGLYRGAKSY----ASFTRTRDDGCSSKMRSRGPIRQTTTVRTTSLIDYQ 199
Query: 197 PDICKDYKETGYCGYGDS 250
PD+CKDYKETGYCG+GD+
Sbjct: 200 PDVCKDYKETGYCGFGDT 217
>sp|Q5KB05|CWC24_CRYNE Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans
GN=CWC24 PE=3 SV=1
Length = 329
Score = 69 bits (166), Expect = 8e-012
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +2
Query: 29 GKSTGNEKLYKGLHGYTDHKAGFRRELTVASEKAGGSHGPLRASAHIRASTRFDYQPDIC 208
G+ ++ LY+G Y R L + GP++A++H+R T DYQPD+C
Sbjct: 129 GEIVTDDGLYRGASAYLPTINKTRETLDKKMKS-----GPIKATSHVRTITLMDYQPDVC 183
Query: 209 KDYKETGYCGYGDS 250
KDYKETG+CGYGDS
Sbjct: 184 KDYKETGFCGYGDS 197
>sp|Q55G16|RN113_DICDI RING finger protein 113 homolog OS=Dictyostelium
discoideum GN=rnf113 PE=4 SV=1
Length = 355
Score = 61 bits (146), Expect = 2e-009
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Frame = +2
Query: 20 KGTGKSTGNEK-LYKGLHGYTDHKAGFRRELTVASEKAGG-SHGPLRASAHIRASTRFDY 193
+G+G S N+ +Y+G+ Y+ F + + + K GG GP++ S + S R D+
Sbjct: 155 EGSGGSDNNDDGIYRGMKSYST----FVEKKSDLTYKGGGVKAGPMKTSTTFKLSNRIDH 210
Query: 194 QPDICKDYKETGYCGYGDS 250
QPD+CKDYK+TG C +GD+
Sbjct: 211 QPDVCKDYKQTGQCTFGDA 229
>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica
GN=CWC24 PE=3 SV=1
Length = 256
Score = 59 bits (140), Expect = 8e-009
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +2
Query: 149 LRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
L+AS++I+++T DYQPD+CKDYK TG+CGYGDS
Sbjct: 118 LKASSNIKSTTSQDYQPDVCKDYKLTGFCGYGDS 151
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=tag-331 PE=1 SV=2
Length = 384
Score = 58 bits (139), Expect = 1e-008
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Frame = +2
Query: 2 QSEEALKGTGKSTGNEKLYKG--LHGYTDHKAGFRRELTVASEKAGGSH--GPLRASAHI 169
Q +E ++ GK LYKG L+G + K T A G + GP+RA +
Sbjct: 120 QLKEGVEKDGKI-----LYKGSALYGAKEAKD------TAKGNAASGYNRVGPVRAPQFL 168
Query: 170 RASTRFDYQPDICKDYKETGYCGYGDS 250
R + R+D+ PDICKDYKETG+C +GDS
Sbjct: 169 RQTVRWDFAPDICKDYKETGFCTFGDS 195
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans
GN=cwc24 PE=3 SV=1
Length = 332
Score = 58 bits (138), Expect = 1e-008
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 143 GPLRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
GP++A ++R T DY PD+CKDYK TGYCG+GDS
Sbjct: 147 GPIKAPTNVRTVTFMDYAPDVCKDYKLTGYCGFGDS 182
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwc24 OS=Schizosaccharomyces
pombe GN=cwf24 PE=1 SV=1
Length = 533
Score = 54 bits (129), Expect = 1e-007
Identities = 23/38 (60%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = +2
Query: 143 GPLRAS--AHIRASTRFDYQPDICKDYKETGYCGYGDS 250
GP+ +S + +R +T DYQPD+CKDYK TGYCGYGD+
Sbjct: 167 GPVLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDT 204
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces
cerevisiae GN=CWC24 PE=1 SV=1
Length = 259
Score = 54 bits (129), Expect = 1e-007
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2
Query: 164 HIRASTRFDYQPDICKDYKETGYCGYGDS 250
+IR + D+QPD+CKDYK+TGYCGYGDS
Sbjct: 130 NIRTTVLMDFQPDVCKDYKQTGYCGYGDS 158
>sp|Q7SDY3|CWC24_NEUCR Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa
GN=cwc-24 PE=3 SV=1
Length = 405
Score = 54 bits (128), Expect = 2e-007
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +2
Query: 143 GPLRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
GP++A ++IR T D PD+CKDYK+TG+CG+GD+
Sbjct: 206 GPIKAPSNIRTITITDMAPDVCKDYKQTGFCGFGDN 241
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii
GN=CWC24 PE=3 SV=1
Length = 250
Score = 53 bits (125), Expect = 4e-007
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 125 KAGGSHGPLRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
+A S +++R DYQPD+CKDY++TG+CGYGDS
Sbjct: 80 RAESSGARTAVGSNVRTRVVMDYQPDVCKDYRQTGFCGYGDS 121
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata
GN=CWC24 PE=3 SV=1
Length = 226
Score = 53 bits (125), Expect = 4e-007
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +2
Query: 149 LRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
++ +A++R + D+QPD+CKD+K+TGYCGYGDS
Sbjct: 94 IQQAANLRNTILTDFQPDVCKDFKQTGYCGYGDS 127
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis
GN=CWC24 PE=3 SV=1
Length = 229
Score = 52 bits (123), Expect = 7e-007
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Frame = +2
Query: 116 ASEKAGGSHGPLRASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
A K G P+ S +++ T DYQPDICKD+++TGYCGYGDS
Sbjct: 88 AKAKVSGFVKPV--SKNMKTVTITDYQPDICKDFQKTGYCGYGDS 130
>sp|Q6BYU0|CWC24_DEBHA Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii
GN=CWC24 PE=3 SV=2
Length = 232
Score = 50 bits (117), Expect = 4e-006
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Frame = +2
Query: 119 SEKAGG--SHGPLR-ASAHIRASTRFDYQPDICKDYKETGYCGYGDS 250
++K+ G S GP++ I+ +T D+QPD+CKD+ +TGYCGYGD+
Sbjct: 86 TDKSAGEKSVGPIKPPPISIKTTTITDFQPDVCKDFLQTGYCGYGDT 132
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,157,057,276
Number of Sequences: 462764
Number of Extensions: 20157057276
Number of Successful Extensions: 184850746
Number of sequences better than 0.0: 0
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