BLASTX 7.6.2
Query= RU17238 /QuerySize=392
(391 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein... 253 2e-067
sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein... 245 6e-065
sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio re... 149 3e-036
sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taur... 147 2e-035
sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sap... 147 2e-035
sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca f... 147 2e-035
sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musc... 147 2e-035
sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo ab... 147 2e-035
sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus nor... 147 2e-035
sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus g... 146 2e-035
sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus ... 146 2e-035
sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus ... 145 5e-035
sp|Q5KND3|SLT11_CRYNE Pre-mRNA-splicing factor SLT11 OS=Cryptoco... 127 2e-029
sp|Q4PGU6|SLT11_USTMA Pre-mRNA-splicing factor SLT11 OS=Ustilago... 71 1e-012
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza
sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 253 bits (645), Expect = 2e-067
Identities = 118/130 (90%), Positives = 126/130 (96%)
Frame = +2
Query: 2 DYGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILK 181
+YGLPVQVRDTALAI S+DAIP+SDVNRE+FAEEHDRKARAGIDY+SS+GKARPNDTILK
Sbjct: 88 EYGLPVQVRDTALAINSNDAIPRSDVNREYFAEEHDRKARAGIDYDSSHGKARPNDTILK 147
Query: 182 LQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAM 361
LQRT PYYKRNRAHVCSFY+RGECTRGAECPYRHEMP TGELSQQNIKDRYYGVNDPVA+
Sbjct: 148 LQRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAL 207
Query: 362 KLLNKAGEMP 391
KLL KAGEMP
Sbjct: 208 KLLGKAGEMP 217
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza
sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 245 bits (623), Expect = 6e-065
Identities = 114/130 (87%), Positives = 124/130 (95%)
Frame = +2
Query: 2 DYGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILK 181
+YGLPVQVRDTAL+ S+DAIP+SDVNRE+FAEEHDR+ARAGIDY+SS GKAR NDTILK
Sbjct: 88 EYGLPVQVRDTALSTNSNDAIPRSDVNREYFAEEHDRRARAGIDYDSSNGKARANDTILK 147
Query: 182 LQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAM 361
LQRT PYYKRNRAHVCSFY+RGECTRGAECPYRHEMP TGELSQQNIKDRYYGVNDPVA+
Sbjct: 148 LQRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAL 207
Query: 362 KLLNKAGEMP 391
KLL+KAGEMP
Sbjct: 208 KLLSKAGEMP 217
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22
PE=2 SV=1
Length = 425
Score = 149 bits (376), Expect = 3e-036
Identities = 74/135 (54%), Positives = 96/135 (71%), Gaps = 7/135 (5%)
Frame = +2
Query: 2 DYGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDT 172
+YGLP+QVRDT L++ D +P+SDVN+E++ + +R+ G GKA +D
Sbjct: 89 EYGLPIQVRDTGLSV--KDEVPRSDVNKEYYTQNMEREIANSDGTRPVGLLGKAPSSSDM 146
Query: 173 ILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVN 346
+LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+N
Sbjct: 147 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIN 206
Query: 347 DPVAMKLLNKAGEMP 391
DPVA KLL +A MP
Sbjct: 207 DPVANKLLMRASTMP 221
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22
PE=2 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22
PE=1 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis
GN=RBM22 PE=2 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22
PE=2 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22
PE=2 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus
GN=Rbm22 PE=2 SV=1
Length = 420
Score = 147 bits (369), Expect = 2e-035
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L+ D +PKSDVN+E++ + +R+ G GKA +D +
Sbjct: 90 YGLPIQVRDAGLSFKDD--MPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22
PE=2 SV=1
Length = 420
Score = 146 bits (368), Expect = 2e-035
Identities = 73/134 (54%), Positives = 95/134 (70%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD L++ D +PKSDVN+E++ + +R+ G + GKA +D +
Sbjct: 90 YGLPIQVRDAGLSL--KDEMPKSDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ Q+IKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQDIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22
PE=2 SV=1
Length = 417
Score = 146 bits (368), Expect = 2e-035
Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRDT +++ D +P+SDVN+E++ + +R+ G + GKA +D +
Sbjct: 90 YGLPIQVRDTGVSL--KDEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDR+YG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis
GN=rbm22 PE=2 SV=1
Length = 417
Score = 145 bits (365), Expect = 5e-035
Identities = 72/134 (53%), Positives = 94/134 (70%), Gaps = 7/134 (5%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKA--RAGIDYESSYGKA-RPNDTI 175
YGLP+QVRD ++ D +P+SDVN+E++ + +R+ G + GKA +D +
Sbjct: 90 YGLPIQVRDAGASL--KDEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDML 147
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGE--LSQQNIKDRYYGVND 349
LKL RTTPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYG+ND
Sbjct: 148 LKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGIND 207
Query: 350 PVAMKLLNKAGEMP 391
PVA KLL +A MP
Sbjct: 208 PVADKLLKRASTMP 221
>sp|Q5KND3|SLT11_CRYNE Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans
GN=SLT11 PE=3 SV=1
Length = 326
Score = 127 bits (318), Expect = 2e-029
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 8/133 (6%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFF---AEEHDRKARAGIDYESSYGKARPNDTI 175
+GLP QVRD ALA + P SD+N++++ E ++ G+ Y+S + +
Sbjct: 86 FGLPTQVRDAALARKAQ--APSSDINKQYYIQNLEAQMAESPDGLAYDSEVANRAGREML 143
Query: 176 LKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGEL---SQQNIKDRYYGVN 346
L RT PYYKRNR H+CSF+++GEC RGAECP+RHEMP E SQQ++ DRYYG N
Sbjct: 144 KNLARTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRN 203
Query: 347 DPVAMKLLNKAGE 385
DPVA K+L++ E
Sbjct: 204 DPVAKKILSQNAE 216
>sp|Q4PGU6|SLT11_USTMA Pre-mRNA-splicing factor SLT11 OS=Ustilago maydis
GN=SLT11 PE=3 SV=1
Length = 324
Score = 71 bits (173), Expect = 1e-012
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILKL 184
YGLPVQVRD AL I SD SD + +FA+ +++ A + S G+ + + K
Sbjct: 80 YGLPVQVRDAALGIKSDAGPTSSDKAKAYFADTMEKQLEATVGSSSRAGQ----ELVRKA 135
Query: 185 QRTTPYYKRNR----AHVCSFYIRGECTRGAECPYRHEMPITGEL 307
R YKR+R +CS + RG C RG CP++H++P +L
Sbjct: 136 ARREIDYKRDRPVQSQKLCSAFARGRCERGDSCPFKHQLPTDDQL 180
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,157,057,276
Number of Sequences: 462764
Number of Extensions: 20157057276
Number of Successful Extensions: 184850746
Number of sequences better than 0.0: 0
|