BLASTX 7.6.2
Query= RU20048 /QuerySize=884
(883 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61219|RPAB2_MOUSE DNA-directed RNA polymerases I, II, and II... 132 3e-030
sp|O88828|RPAB2_RAT DNA-directed RNA polymerases I, II, and III ... 132 3e-030
sp|P61217|RPAB2_CRIGR DNA-directed RNA polymerases I, II, and II... 132 4e-030
sp|P61218|RPAB2_HUMAN DNA-directed RNA polymerases I, II, and II... 132 4e-030
sp|Q5R592|RPAB2_PONAB DNA-directed RNA polymerases I, II, and II... 132 4e-030
sp|Q32PE0|RPAB2_BOVIN DNA-directed RNA polymerases I, II, and II... 130 2e-029
sp|P20435|RPAB2_YEAST DNA-directed RNA polymerases I, II, and II... 130 2e-029
sp|Q17684|RPAB2_CAEEL Probable DNA-directed RNA polymerases I, I... 128 6e-029
sp|Q24320|RPAB2_DROME DNA-directed RNA polymerases I, II, and II... 124 7e-028
sp|P36595|RPAB2_SCHPO DNA-directed RNA polymerases I, II, and II... 124 1e-027
sp|A8WSV7|RPAB2_CAEBR Probable DNA-directed RNA polymerases I, I... 123 2e-027
sp|Q54FA8|RPAB2_DICDI DNA-directed RNA polymerases I, II, and II... 122 3e-027
sp|Q8PW42|RPOK_METMA DNA-directed RNA polymerase subunit K OS=Me... 62 3e-009
sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase subunit K OS=Ae... 61 1e-008
sp|Q8TT40|RPOK_METAC DNA-directed RNA polymerase subunit K OS=Me... 61 1e-008
sp|Q5UQ32|RPO6_MIMIV DNA-directed RNA polymerase subunit 6 OS=Ac... 60 1e-008
sp|O26148|RPOK_METTH DNA-directed RNA polymerase subunit K OS=Me... 60 2e-008
sp|O29134|RPOK_ARCFU DNA-directed RNA polymerase subunit K OS=Ar... 59 3e-008
sp|A1RWX0|RPOK_THEPD DNA-directed RNA polymerase subunit K OS=Th... 59 3e-008
sp|Q8ZTF9|RPOK_PYRAE DNA-directed RNA polymerase subunit K OS=Py... 58 6e-008
sp|A2SSV2|RPOK_METLZ DNA-directed RNA polymerase subunit K OS=Me... 57 1e-007
sp|Q97ZJ9|RPOK_SULSO DNA-directed RNA polymerase subunit K OS=Su... 55 7e-007
sp|Q8U0E8|RPOK_PYRFU DNA-directed RNA polymerase subunit K OS=Py... 52 4e-006
>sp|P61219|RPAB2_MOUSE DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Mus musculus GN=Polr2f PE=2 SV=1
Length = 127
Score = 132 bits (331), Expect = 3e-030
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E + E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>sp|O88828|RPAB2_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Rattus norvegicus GN=Polr2f PE=1 SV=1
Length = 127
Score = 132 bits (331), Expect = 3e-030
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E + E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
>sp|P61217|RPAB2_CRIGR DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Cricetulus griseus GN=POLR2F PE=2 SV=1
Length = 127
Score = 132 bits (330), Expect = 4e-030
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E + E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|P61218|RPAB2_HUMAN DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Homo sapiens GN=POLR2F PE=1 SV=1
Length = 127
Score = 132 bits (330), Expect = 4e-030
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E + E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|Q5R592|RPAB2_PONAB DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Pongo abelii GN=POLR2F PE=2 SV=1
Length = 127
Score = 132 bits (330), Expect = 4e-030
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E + E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|Q32PE0|RPAB2_BOVIN DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Bos taurus GN=POLR2F PE=2 SV=1
Length = 127
Score = 130 bits (325), Expect = 2e-029
Identities = 71/105 (67%), Positives = 79/105 (75%), Gaps = 6/105 (5%)
Frame = -2
Query: 582 DDLAGDAIETDDKEEQVPV-ERP-----RKTSKFMTKYERARILGTRAVQISMNAPVMVE 421
DDL E E +P ERP R T+ +MTKYERAR+LGTRA+QI+M APVMVE
Sbjct: 23 DDLENAEEEGQVNVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVE 82
Query: 420 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
LEGETDPL IAMKEL+ RKIP IRRYLPDGSYEDWGVDELI+ D
Sbjct: 83 LEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>sp|P20435|RPAB2_YEAST DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Saccharomyces cerevisiae GN=RPO26 PE=1 SV=1
Length = 155
Score = 130 bits (325), Expect = 2e-029
Identities = 63/86 (73%), Positives = 75/86 (87%), Gaps = 1/86 (1%)
Frame = -2
Query: 546 KEEQVPVERPRKTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRER 367
KE+ +P ++ R T+ +MTKYERARILGTRA+QISMNAPV V+LEGETDPL IAMKEL E+
Sbjct: 70 KEKAIPKDQ-RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEK 128
Query: 366 KIPFTIRRYLPDGSYEDWGVDELIVE 289
KIP IRRYLPDGS+EDW V+ELIV+
Sbjct: 129 KIPLVIRRYLPDGSFEDWSVEELIVD 154
>sp|Q17684|RPAB2_CAEEL Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2 OS=Caenorhabditis elegans GN=rpb-6 PE=2 SV=1
Length = 137
Score = 128 bits (320), Expect = 6e-029
Identities = 63/102 (61%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Frame = -2
Query: 591 DNNDDLAGDAIETDDKEEQVPVERPRKTSKFMTKYERARILGTRAVQISMNAPVMVELEG 412
D +DD + E D+ + VP T+ FMTKYERAR+LGTRA+QI+M APVMVELEG
Sbjct: 36 DEDDDNVDENFELFDQGKAVPTSE-HVTTPFMTKYERARVLGTRALQIAMGAPVMVELEG 94
Query: 411 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
ETDPLEIA KEL++R+IP +RRYLPDGSYEDW D+L + D
Sbjct: 95 ETDPLEIARKELKQRRIPIIVRRYLPDGSYEDWPTDQLQLAD 136
>sp|Q24320|RPAB2_DROME DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Drosophila melanogaster GN=RpII18 PE=1 SV=1
Length = 131
Score = 124 bits (311), Expect = 7e-028
Identities = 57/78 (73%), Positives = 71/78 (91%)
Frame = -2
Query: 516 RKTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 337
R T+K+MTKYERAR+LGTRA+QI+M AP+MVEL+GETDPL+IAMKEL+++KIP IRRYL
Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYL 113
Query: 336 PDGSYEDWGVDELIVEDS 283
PD SYEDW +DELI+ D+
Sbjct: 114 PDHSYEDWSIDELIMVDN 131
>sp|P36595|RPAB2_SCHPO DNA-directed RNA polymerases I, II, and III subunit
RPABC2 OS=Schizosaccharomyces pombe GN=rpb6 PE=2 SV=1
Length = 142
Score = 124 bits (309), Expect = 1e-027
Identities = 58/74 (78%), Positives = 67/74 (90%)
Frame = -2
Query: 516 RKTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 337
R T+ +MTKYERARILGTRA+QISMNAPV+V+LEGETDPL+IAMKEL ++KIP +RRYL
Sbjct: 69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYL 128
Query: 336 PDGSYEDWGVDELI 295
PDGSYEDW V ELI
Sbjct: 129 PDGSYEDWSVAELI 142
>sp|A8WSV7|RPAB2_CAEBR Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2 OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1
Length = 138
Score = 123 bits (308), Expect = 2e-027
Identities = 60/102 (58%), Positives = 78/102 (76%), Gaps = 1/102 (0%)
Frame = -2
Query: 591 DNNDDLAGDAIETDDKEEQVPVERPRKTSKFMTKYERARILGTRAVQISMNAPVMVELEG 412
+++D+ + E D+ + VP T+ FMTKYERAR+LGTRA+QI+M APVMVELEG
Sbjct: 37 EDDDNNVDENFELFDQGKAVPTSE-HVTTPFMTKYERARVLGTRALQIAMGAPVMVELEG 95
Query: 411 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 286
ETDPLEIA KEL++R++P IRRYLPDGSYEDW ++L + D
Sbjct: 96 ETDPLEIARKELKQRRVPIIIRRYLPDGSYEDWPTEQLQLAD 137
>sp|Q54FA8|RPAB2_DICDI DNA-directed RNA polymerases I, II, and III subunit
rpabc2 OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1
Length = 133
Score = 122 bits (306), Expect = 3e-027
Identities = 56/75 (74%), Positives = 68/75 (90%)
Frame = -2
Query: 516 RKTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 337
RKT+++MTKYERAR+LG+RA+QISMNAP+MVELEGETDPL+IA KELR +KIP IRR+L
Sbjct: 59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFL 118
Query: 336 PDGSYEDWGVDELIV 292
P+G YEDW VDEL +
Sbjct: 119 PNGMYEDWSVDELSI 133
>sp|Q8PW42|RPOK_METMA DNA-directed RNA polymerase subunit K OS=Methanosarcina
mazei GN=rpoK PE=3 SV=1
Length = 83
Score = 62 bits (150), Expect = 3e-009
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = -2
Query: 495 TKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
T++ERARI+G RA+QI+M APV+VE +G DPL +A++EL+ IP T++R
Sbjct: 30 TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase subunit K OS=Aeropyrum pernix
GN=rpoK PE=3 SV=2
Length = 89
Score = 61 bits (146), Expect = 1e-008
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -2
Query: 501 FMTKYERARILGTRAVQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 328
++TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G
Sbjct: 7 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66
Query: 327 SYEDWGVDELI 295
+ + L+
Sbjct: 67 GGQSLSLSRLV 77
>sp|Q8TT40|RPOK_METAC DNA-directed RNA polymerase subunit K OS=Methanosarcina
acetivorans GN=rpoK PE=3 SV=1
Length = 60
Score = 61 bits (146), Expect = 1e-008
Identities = 27/51 (52%), Positives = 40/51 (78%)
Frame = -2
Query: 495 TKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
T++ERARI+G RA+QI+M APV+V+ +G DPL +A+ EL+ IP T++R
Sbjct: 7 TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>sp|Q5UQ32|RPO6_MIMIV DNA-directed RNA polymerase subunit 6 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R209 PE=3 SV=1
Length = 396
Score = 60 bits (145), Expect = 1e-008
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = -2
Query: 525 ERPRKTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 346
+ R+T +T YE RILGTRA Q + A +++ P ++A EL + F +R
Sbjct: 184 DNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVR 243
Query: 345 RYLPDGSYEDWGVDEL 298
R+LP YEDW +DEL
Sbjct: 244 RHLPGKKYEDWRIDEL 259
>sp|O26148|RPOK_METTH DNA-directed RNA polymerase subunit K OS=Methanobacterium
thermoautotrophicum GN=rpoK PE=3 SV=1
Length = 61
Score = 60 bits (144), Expect = 2e-008
Identities = 27/55 (49%), Positives = 42/55 (76%)
Frame = -2
Query: 507 SKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
SK +T++ERAR++G RA+QISM A +VE++ DP++IA KEL ++ +P +RR
Sbjct: 5 SKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>sp|O29134|RPOK_ARCFU DNA-directed RNA polymerase subunit K OS=Archaeoglobus
fulgidus GN=rpoK PE=3 SV=1
Length = 75
Score = 59 bits (142), Expect = 3e-008
Identities = 27/51 (52%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = -2
Query: 495 TKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
T++E+ARI+G RA+QI+M APV++E + +T+PLEIA++E IP T+RR
Sbjct: 12 TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>sp|A1RWX0|RPOK_THEPD DNA-directed RNA polymerase subunit K OS=Thermofilum
pendens (strain Hrk 5) GN=rpoK PE=3 SV=1
Length = 81
Score = 59 bits (142), Expect = 3e-008
Identities = 27/63 (42%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = -2
Query: 501 FMTKYERARILGTRAVQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRRYLPDGS 325
++T++ERARI+G RA+QIS+ APV++++ E +DP+ IA KEL +P + R+ P+G
Sbjct: 7 WLTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGK 66
Query: 324 YED 316
++
Sbjct: 67 IQE 69
>sp|Q8ZTF9|RPOK_PYRAE DNA-directed RNA polymerase subunit K OS=Pyrobaculum
aerophilum GN=rpoK PE=3 SV=1
Length = 106
Score = 58 bits (139), Expect = 6e-008
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Frame = -2
Query: 498 MTKYERARILGTRAVQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 328
+TKYE ARI+G RA+Q++M A +V+++ G DP+ IAM+ELR + F I R +PDG
Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDG 89
>sp|A2SSV2|RPOK_METLZ DNA-directed RNA polymerase subunit K
OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=rpoK PE=3 SV=1
Length = 62
Score = 57 bits (136), Expect = 1e-007
Identities = 27/51 (52%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = -2
Query: 495 TKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
T+YERARI+G RA+QISM APV+V+ + DPL+IA++E ++P T++R
Sbjct: 4 TRYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKR 53
>sp|Q97ZJ9|RPOK_SULSO DNA-directed RNA polymerase subunit K OS=Sulfolobus
solfataricus GN=rpoK PE=1 SV=1
Length = 95
Score = 55 bits (130), Expect = 7e-007
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -2
Query: 498 MTKYERARILGTRAVQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 328
+T+YE AR++ RA+Q++M AP ++++ TD + IA +E R +P TIRR LP+G
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>sp|Q8U0E8|RPOK_PYRFU DNA-directed RNA polymerase subunit K OS=Pyrococcus
furiosus GN=rpoK PE=3 SV=1
Length = 57
Score = 52 bits (123), Expect = 4e-006
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -2
Query: 495 TKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 343
T++E+ARI+G RA+QISM APV++++ PLE A+ E + IP T+ R
Sbjct: 5 TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,133,449,078
Number of Sequences: 462764
Number of Extensions: 22133449078
Number of Successful Extensions: 193841713
Number of sequences better than 0.0: 0
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