BLASTX 7.6.2
Query= RU22209 /QuerySize=739
(738 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidops... 152 2e-036
sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidops... 75 4e-013
sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidops... 74 8e-013
sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=S... 63 2e-009
sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidops... 60 1e-008
sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex prot... 57 1e-007
sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sa... 53 2e-006
sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus mus... 53 2e-006
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana
GN=SWI3A PE=1 SV=1
Length = 512
Score = 152 bits (383), Expect = 2e-036
Identities = 77/174 (44%), Positives = 110/174 (63%), Gaps = 9/174 (5%)
Frame = -1
Query: 591 LPPLASYSNVFGDLKKES--LVCGNCGGHCDSGHYKYNKGDFLLCTKCFENGNHGENKLK 418
+PPL SYS+VF DLKK LVC +CG CDS Y++NKG +C KCF+NGN+GEN
Sbjct: 155 VPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTA 214
Query: 417 ENFKYNEPVEKSSNMGVEWTESETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDL 238
++FK ++ WTE E LLLL+SV KHGDDW+ ++Q+V TK+++DCI+KLI+L
Sbjct: 215 DDFKL-----IGNSAAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIEL 269
Query: 237 PFGEVVLGSGHRKGNHSGFXXXXXXXXXXXXXXXECQETIKTKSQSHEQINDSE 76
PFGE ++GS + N S E +ET +T+ + +++N+ E
Sbjct: 270 PFGEFLMGSASGRLNPS-ILTEDENTEQVQTDGQEHEET-ETREEKEDRVNEDE 321
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana
GN=SWI3B PE=1 SV=1
Length = 469
Score = 75 bits (183), Expect = 4e-013
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = -1
Query: 531 CGNCGGHCDSGHYKYNKGDFLLCTKCFENGNHGENKLKENFKYNEPVEKSSNMGVEWTES 352
C C C + +K D LC +C+ N+ FK VE S EW++
Sbjct: 175 CNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFK---RVEISEESKPEWSDK 231
Query: 351 ETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLPFGE 226
E LLLL++V +GDDW VA +V +T+ DC+++ + LPFGE
Sbjct: 232 EILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGE 273
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana
GN=SWI3D PE=1 SV=3
Length = 985
Score = 74 bits (180), Expect = 8e-013
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = -1
Query: 531 CGNCGGHCDSGHYKYNK-GDFLLCTKCFENGNHGENKLKENFKYNEPVEKSSNMGVEWTE 355
C +C C Y K DF LCT+CF +G + +F EP E +WT+
Sbjct: 310 CNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTD 369
Query: 354 SETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLPFGEVVL 217
ETLLLL+++ ++W+ +A++V TKTK C+ + +P + L
Sbjct: 370 QETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFL 415
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2
OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3
Length = 503
Score = 63 bits (151), Expect = 2e-009
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -1
Query: 534 VCGNCGGHCDSGHYKYNKG-DFLLCTKCFENGNHGENKLKENFKYNEPVEKSSNMGVEWT 358
VC CG +C Y K + +C C++ G + +F + ++ + + W+
Sbjct: 192 VCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMDAIDFNHDEEKPWS 251
Query: 357 ESETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLP 235
ETLLLL+++ +GDDW+ +A +V ++TK C+ + +P
Sbjct: 252 NQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIP 292
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana
GN=SWI3C PE=1 SV=1
Length = 807
Score = 60 bits (144), Expect = 1e-008
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 531 CGNCGGHCDSGHYK-YNKGDFLLCTKCFENGNHGENKLKENFKYNEPVEKSSNM-GVEWT 358
C +C + +++ KGD LLC CF +G +F +P++ + G WT
Sbjct: 345 CNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWT 404
Query: 357 ESETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLPFGEVVL 217
+ ETLLLL++V + ++W +A +V +K+K CI + LP + +L
Sbjct: 405 DQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLL 451
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae GN=RSC8 PE=1 SV=1
Length = 557
Score = 57 bits (136), Expect = 1e-007
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Frame = -1
Query: 534 VCGNCGGHCDSGHY-KYNKGDFLLCTKCFENGNHGENKLKENFKYNEPVEKSSNMGVEWT 358
+C CG + Y D LC++CF+ G+ G N +F E +++ W+
Sbjct: 259 ICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLE--NNGNSVKKNWS 316
Query: 357 ESETLLLLDSVAKHGDDWDCVAQNVKTKTKV-DCIAKLIDLP-----FGEVVLGSGHRKG 196
+ E LLLL+ + + D W+ +A +V +V DCI K + LP EVV + + KG
Sbjct: 317 DQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIEDNYIREVVGSTLNGKG 376
Query: 195 NHS 187
S
Sbjct: 377 GDS 379
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens
GN=SMARCC1 PE=1 SV=3
Length = 1105
Score = 53 bits (125), Expect = 2e-006
Identities = 23/57 (40%), Positives = 39/57 (68%)
Frame = -1
Query: 387 KSSNMGVEWTESETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLPFGEVVL 217
K ++ G EWTE ETLLLL+++ + DDW+ V+++V ++T+ +CI + LP + L
Sbjct: 615 KGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL 671
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus
GN=Smarcc1 PE=1 SV=2
Length = 1104
Score = 53 bits (125), Expect = 2e-006
Identities = 23/57 (40%), Positives = 39/57 (68%)
Frame = -1
Query: 387 KSSNMGVEWTESETLLLLDSVAKHGDDWDCVAQNVKTKTKVDCIAKLIDLPFGEVVL 217
K ++ G EWTE ETLLLL+++ + DDW+ V+++V ++T+ +CI + LP + L
Sbjct: 614 KGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL 670
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,542,086,135
Number of Sequences: 462764
Number of Extensions: 23542086135
Number of Successful Extensions: 219543700
Number of sequences better than 0.0: 0
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