BLASTX 7.6.2
Query= RU22450 /QuerySize=406
(405 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB... 209 3e-054
sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB... 183 2e-046
sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3... 120 2e-027
sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3... 118 7e-027
sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3... 117 1e-026
sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3... 116 3e-026
sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3... 107 1e-023
sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3... 102 4e-022
sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetra... 82 5e-016
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III sub... 77 1e-014
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III sub... 75 5e-014
sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III sub... 75 9e-014
sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Ar... 72 4e-013
sp|B1YC30|RPOD_THENV DNA-directed RNA polymerase subunit D OS=Th... 71 1e-012
sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Me... 70 2e-012
sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Me... 70 2e-012
sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Py... 70 2e-012
sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Py... 70 3e-012
sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III sub... 69 4e-012
sp|A4WNA4|RPOD_PYRAR DNA-directed RNA polymerase subunit D OS=Py... 67 2e-011
sp|Q8ZYQ3|RPOD_PYRAE DNA-directed RNA polymerase subunit D OS=Py... 66 4e-011
sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Py... 66 4e-011
sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Py... 65 9e-011
sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Py... 64 2e-010
sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Py... 63 3e-010
sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Me... 62 6e-010
sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D OS=Me... 59 5e-009
sp|Q3IQT6|RPOD_NATPD DNA-directed RNA polymerase subunit D OS=Na... 59 6e-009
sp|Q57648|RPOD_METJA DNA-directed RNA polymerase subunit D OS=Me... 58 1e-008
sp|Q9YB53|RPOD_AERPE DNA-directed RNA polymerase subunit D OS=Ae... 57 1e-008
>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A
OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1
Length = 319
Score = 209 bits (531), Expect = 3e-054
Identities = 98/120 (81%), Positives = 113/120 (94%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP++KIRE++ DY KFELR+TD S+ANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L ++C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
>sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B
OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2
Length = 319
Score = 183 bits (464), Expect = 2e-046
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP VKIRE++ DY KFELR+TD S+ANALRRVMI+EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIA RL LIPLTS+RAMSMRF +DC+ C+GD CE+CSVEF L A+C +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
>sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3
OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1
Length = 302
Score = 120 bits (299), Expect = 2e-027
Identities = 63/113 (55%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = -3
Query: 340 RFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFI 161
R P ++I E+++D + F L +TD SVANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 160 AHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
AHRLGLIPL SD ++RDC D +C+ CSVE L +C ++ DV
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDV 119
>sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus
GN=POLR2C PE=2 SV=1
Length = 275
Score = 118 bits (295), Expect = 7e-027
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P V+I E+ + +KF + +TD +VAN++RRV IAEVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 166 FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHRLGLIPLTSD + +++SRDC + C CSVEF L RC+ DQT V
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHV 115
>sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 OS=Mus
musculus GN=Polr2c PE=2 SV=1
Length = 275
Score = 117 bits (293), Expect = 1e-026
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P V+I E+ + +KF + +TD +VAN++RRV IAEVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 166 FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHRLGLIPLTSD + +++SRDC + C CSVEF L RC+ DQT V
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHV 115
>sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 OS=Homo
sapiens GN=POLR2C PE=1 SV=2
Length = 275
Score = 116 bits (289), Expect = 3e-026
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P V+I E+ + +KF + +TD +VAN++RRV IAEVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 166 FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHRLGLIPL SD + +++SRDC + C CSVEF L RC+ DQT V
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHV 115
>sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3
OS=Saccharomyces cerevisiae GN=RPB3 PE=1 SV=2
Length = 318
Score = 107 bits (267), Expect = 1e-023
Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P+VKIRE D + F L + D ++AN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNV 113
>sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3
OS=Schizosaccharomyces pombe GN=rpb3 PE=1 SV=2
Length = 297
Score = 102 bits (254), Expect = 4e-022
Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 8/113 (7%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
+ IR + + + F L +T +VAN+LRRV++AE+PTVAIDLVEI +N+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 148 GLIPLTSDR-----AMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLD 5
G+IPL S + + ++R+CD D C CSVE L A+C + T++
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTME 116
>sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetrahymena
thermophila GN=CNJC PE=2 SV=1
Length = 310
Score = 82 bits (201), Expect = 5e-016
Identities = 40/98 (40%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Frame = -3
Query: 295 KFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAM 116
+F L + D S+AN+LRR+++AE+ T+AI V++ N+S L DE+IAHRLGLIPL S +
Sbjct: 17 EFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKVD 76
Query: 115 SMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
+ +C+ G+C+ C++ F LR +++ L+V
Sbjct: 77 DYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEV 111
>sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Bos taurus GN=POLR1C PE=2 SV=1
Length = 346
Score = 77 bits (189), Expect = 1e-014
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
RV + M + L+F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 151 LGLIPLTSD-RAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
LGLIP+ +D R R D +G E +++F L+ RC
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRC 146
>sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Homo sapiens GN=POLR1C PE=1 SV=1
Length = 346
Score = 75 bits (184), Expect = 5e-014
Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
RV + M + L+F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 151 LGLIPLTSD-RAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
LGLIP+ +D R R D + + D +++F L+ RC
Sbjct: 110 LGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRC 146
>sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1
OS=Mus musculus GN=Polr1e PE=1 SV=2
Length = 346
Score = 75 bits (182), Expect = 9e-014
Identities = 39/103 (37%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
RV + +M D L+F++ DA++ANA RR+++A VPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 151 LGLIPLTSD-RAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
LGLIP+ +D R R + + + D +++F L+ RC
Sbjct: 110 LGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRC 146
>sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Archaeoglobus
fulgidus GN=rpoD PE=3 SV=1
Length = 264
Score = 72 bits (176), Expect = 4e-013
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P ++I E + +KF L++ ++AN+ RR M AEVP +A+D V+I +NSS DE IAH
Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62
Query: 154 RLGLIPLTS--DRAMSMRFSRDCDACDGDGQCEYCSVEFHL 38
RL ++P+ + DR +C +C G+G C C + F L
Sbjct: 63 RLAMLPIKTYLDR---FNMQSEC-SCGGEG-CPNCQISFRL 98
>sp|B1YC30|RPOD_THENV DNA-directed RNA polymerase subunit D OS=Thermoproteus
neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoD PE=3 SV=1
Length = 262
Score = 71 bits (172), Expect = 1e-012
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P VK+ E +LK + S+ N+LRRV+I+E+P +AID V + N+SV+ DE +AH
Sbjct: 2 PAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAH 61
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTL 8
RLGLIPLT+ S+ DC++ G C+V F L+ + T+
Sbjct: 62 RLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQVNADGEVTV 107
>sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=rpoD PE=3 SV=1
Length = 270
Score = 70 bits (171), Expect = 2e-012
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
++IRE + F + D + N +RR+ + E+PT+AI+ V I N + + DE +AHRL
Sbjct: 3 IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRL 62
Query: 148 GLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
GLIP+ +D + S CD + C++C V F L+ +C
Sbjct: 63 GLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKC 99
>sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Methanosarcina
mazei GN=rpoD PE=3 SV=1
Length = 266
Score = 70 bits (170), Expect = 2e-012
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
V I E+ KF L + AN +RR MIA+VPT+AI+ V + N+SVL DE +A RL
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 148 GLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRA 32
LIPL +D M +C+ C G+G C C V L A
Sbjct: 65 SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSA 101
>sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Pyrococcus
furiosus GN=rpoD PE=3 SV=1
Length = 261
Score = 70 bits (170), Expect = 2e-012
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
V+I E + D +KF L+ S ANALRR ++ EVPT A+D VE N S L DE IAHRL
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 148 GLIPLTS 128
+IPLT+
Sbjct: 66 AMIPLTT 72
>sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Pyrococcus
kodakaraensis GN=rpoD PE=3 SV=1
Length = 259
Score = 70 bits (169), Expect = 3e-012
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = -3
Query: 325 KIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLG 146
KI E R D +KF + D ANALRR +++EVPT A+D VE N S L DE IAHRL
Sbjct: 5 KILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLA 64
Query: 145 LIPLTSDRAMSMRFSRD 95
+IPLT+ RFS D
Sbjct: 65 MIPLTTPHE---RFSLD 78
>sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1
OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1
Length = 345
Score = 69 bits (168), Expect = 4e-012
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
++ I + L FE+ DA +ANALRR+MI+E+PT+AI+ V I N+S+L DE +AHR
Sbjct: 60 KINILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHR 119
Query: 151 LGLIPLTSD 125
LG+IP+ D
Sbjct: 120 LGMIPIKVD 128
>sp|A4WNA4|RPOD_PYRAR DNA-directed RNA polymerase subunit D OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=rpoD PE=3 SV=1
Length = 259
Score = 67 bits (162), Expect = 2e-011
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
PRV I E +LK + S+ N+LRRV+I+E+P +AID V + N+SV+ DEF+A
Sbjct: 2 PRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQ 61
Query: 154 RLGLIPLTS 128
RLGLIPLT+
Sbjct: 62 RLGLIPLTT 70
>sp|Q8ZYQ3|RPOD_PYRAE DNA-directed RNA polymerase subunit D OS=Pyrobaculum
aerophilum GN=rpoD PE=3 SV=1
Length = 260
Score = 66 bits (159), Expect = 4e-011
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
R + E +LK + S+ N+LRRV+I+E+P +AID V + N+SV+ DE +AHR
Sbjct: 3 RATVVERGEYFLKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHR 62
Query: 151 LGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTL 8
LGLIPLT+ S+ DC G CS L+ D T+
Sbjct: 63 LGLIPLTTP-LQSLPPYEDC--VSGLADPSECSTRLTLQVTAEGDTTI 107
>sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=rpoD PE=3 SV=1
Length = 262
Score = 66 bits (159), Expect = 4e-011
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P+ I E +LK + S+ N++RRV+I+E+P +AID V I N+SV+ DE +AH
Sbjct: 2 PKATIVEKTPLFLKAVIEGAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLAH 61
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQ 14
RLGL+PLT+ ++ DC+ G C+V L+ SD+
Sbjct: 62 RLGLVPLTTP-LQALPPIEDCET--GLVDPSECTVRLMLQINAESDK 105
>sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=rpoD PE=3 SV=1
Length = 258
Score = 65 bits (156), Expect = 9e-011
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P+V I E + K + S+ N+LRRV+I+E+P +AID V + N+SV+ DE +AH
Sbjct: 2 PKVSIVEKSQFFAKAVVEGVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLAH 61
Query: 154 RLGLIPLTS 128
RLGLIPLT+
Sbjct: 62 RLGLIPLTT 70
>sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Pyrococcus abyssi
GN=rpoD PE=3 SV=1
Length = 259
Score = 64 bits (154), Expect = 2e-010
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
+KI + D + F L D + ANALRR ++ EVPT A+D VE N S L DE IAHRL
Sbjct: 4 IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 148 GLIPL 134
+IPL
Sbjct: 64 AMIPL 68
>sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Pyrococcus
horikoshii GN=rpoD PE=3 SV=2
Length = 259
Score = 63 bits (151), Expect = 3e-010
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
++KI + D + F L + ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 151 LGLIPL 134
L +IPL
Sbjct: 63 LAMIPL 68
>sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Methanobacterium
thermoautotrophicum GN=rpoD PE=3 SV=1
Length = 264
Score = 62 bits (149), Expect = 6e-010
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
+ ++E + F + NA+RR+ + EVP +AI+ V + N + + DE +AHRL
Sbjct: 3 IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62
Query: 148 GLIPLTSDR--AMSMRFSRDCDACDGDGQCEYCSVEFHLRAR 29
GL+PL +D A S++ +CD + C CSV LR +
Sbjct: 63 GLVPLAADPEFAESLKMPEECDC---EEYCSECSVSLTLRKK 101
>sp|Q8TVB8|RPOD_METKA DNA-directed RNA polymerase subunit D OS=Methanopyrus
kandleri GN=rpoD PE=3 SV=1
Length = 275
Score = 59 bits (141), Expect = 5e-009
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = -3
Query: 292 FELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMS 113
F + +T A N +RR + VPT+ I+ V I N + + DE +AHRLGLIPL D
Sbjct: 21 FIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEMLAHRLGLIPLRVDDIDQ 80
Query: 112 MRFSRDCDACDGDGQCEYCSVEFHL 38
CD C G G CE C V L
Sbjct: 81 FELPDLCD-CGGKG-CEKCQVRAEL 103
>sp|Q3IQT6|RPOD_NATPD DNA-directed RNA polymerase subunit D OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=rpoD PE=3 SV=1
Length = 247
Score = 59 bits (140), Expect = 6e-009
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = -3
Query: 295 KFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTS 128
+F +R + AN LRR MIA+VPT++ID + + NSSV+ DE +A RLGL+PLT+
Sbjct: 18 RFLVRGVTPAFANGLRRAMIADVPTLSIDTLRVVENSSVMFDEQLALRLGLVPLTT 73
>sp|Q57648|RPOD_METJA DNA-directed RNA polymerase subunit D
OS=Methanocaldococcus jannaschii GN=rpoD PE=3 SV=1
Length = 191
Score = 58 bits (138), Expect = 1e-008
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = -3
Query: 268 SVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPL 134
S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPI 69
>sp|Q9YB53|RPOD_AERPE DNA-directed RNA polymerase subunit D OS=Aeropyrum pernix
GN=rpoD PE=3 SV=2
Length = 286
Score = 57 bits (137), Expect = 1e-008
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 328 VKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHRL 149
V++ E+ ++ +R NA+RR ++++VPT+A+D I N++ + DE +AHRL
Sbjct: 9 VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 68
Query: 148 GLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSD 17
GL+ L S+ A+ ++ R + + E C VE L A ++
Sbjct: 69 GLVVLDSNEAVE-KYRRPEECAGKEPSEEDCFVEVSLEAEVDAE 111
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,872,341,632
Number of Sequences: 462764
Number of Extensions: 23872341632
Number of Successful Extensions: 226348076
Number of sequences better than 0.0: 0
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