BLASTX 7.6.2
Query= RU23524 /QuerySize=765
(764 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS... 70 9e-012
sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS... 70 9e-012
sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protei... 70 1e-011
sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS... 69 2e-011
sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS... 65 3e-010
sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerev... 52 3e-006
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus
GN=LSM1 PE=2 SV=1
Length = 133
Score = 70 bits (171), Expect = 9e-012
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSP 307
S DQFAN VL ER+ VG+ Y D+P G++V+RGENVVL+GE+D E+E P + +VS
Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSI 92
Query: 306 AEIKRAQKAERE 271
EI Q+ E++
Sbjct: 93 EEILEEQRVEQQ 104
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens
GN=LSM1 PE=1 SV=1
Length = 133
Score = 70 bits (171), Expect = 9e-012
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSP 307
S DQFAN VL ER+ VG+ Y D+P G++V+RGENVVL+GE+D E+E P + +VS
Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSI 92
Query: 306 AEIKRAQKAERE 271
EI Q+ E++
Sbjct: 93 EEILEEQRVEQQ 104
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 70 bits (170), Expect = 1e-011
Identities = 33/84 (39%), Positives = 55/84 (65%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSP 307
+FDQFAN VL+ ER+ VG+ Y D LGL+ IRG+NVV++GE+D ++E + ++S
Sbjct: 29 TFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKEVQEKKLKKISW 88
Query: 306 AEIKRAQKAEREASDLKGTMRKRM 235
EI +A E+ + + +++R+
Sbjct: 89 DEITKAAALEKIKKEEEEQLKRRI 112
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus
GN=Lsm1 PE=2 SV=1
Length = 133
Score = 69 bits (168), Expect = 2e-011
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSP 307
S DQFAN VL ER+ VG+ Y D+P G++V+RGENVVL+GE+D E+E P + +VS
Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSI 92
Query: 306 AEIKRAQKAERE 271
EI Q+ +++
Sbjct: 93 EEILEEQRVQQQ 104
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1
OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1
Length = 140
Score = 65 bits (158), Expect = 3e-010
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSP 307
SFDQFAN +L+ ER+ V ++Y D+ G+Y++RGENVVL+GELD ++E R P
Sbjct: 40 SFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRMP 99
Query: 306 AEIKRAQKAEREASDLKGTMRKRMEFL 226
AE + A+ + K +R++ ++L
Sbjct: 100 AE-ELYPLAKLHEEEKKKNIREKGKYL 125
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae GN=LSM1
PE=1 SV=1
Length = 172
Score = 52 bits (123), Expect = 3e-006
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = -3
Query: 486 SFDQFANAVLEGACERVIVGE--LYCDLPLGLYVIRGENVVLIGELDSEREELP 331
+FDQ+AN +L+ ER+ E Y + G+++IRGENVV++GE+D ++E+ P
Sbjct: 70 TFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGEVDIDKEDQP 123
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,947,431,911
Number of Sequences: 462764
Number of Extensions: 24947431911
Number of Successful Extensions: 246995722
Number of sequences better than 0.0: 0
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