BLASTX 7.6.2
Query= RU24960 /QuerySize=681
(680 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subun... 99 3e-020
sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subun... 99 3e-020
sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subun... 97 6e-020
sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subun... 87 1e-016
sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subun... 83 2e-015
sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subun... 80 8e-015
sp|Q09784|YA95_SCHPO Uncharacterized protein C13G6.05c OS=Schizo... 80 1e-014
sp|Q99394|TRS33_YEAST Transport protein particle 33 kDa subunit ... 73 1e-012
>sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos
taurus GN=TRAPPC6B PE=2 SV=1
Length = 158
Score = 99 bits (244), Expect = 3e-020
Identities = 42/73 (57%), Positives = 60/73 (82%)
Frame = +1
Query: 151 SRIDAIGYQVGHQLSERYTMERPRFTDHLDAIKFICKDFWSELFKKQIDNLKTNHRGTFV 330
++++ +G++VG L ER+T + RF D LD +KFICKDFW+ +FKKQIDNL+TNH+G +V
Sbjct: 34 TKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYV 93
Query: 331 LQDNRFRWLSRMS 369
LQDN+FR L++MS
Sbjct: 94 LQDNKFRLLTQMS 106
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo
sapiens GN=TRAPPC6B PE=1 SV=1
Length = 158
Score = 99 bits (244), Expect = 3e-020
Identities = 42/73 (57%), Positives = 60/73 (82%)
Frame = +1
Query: 151 SRIDAIGYQVGHQLSERYTMERPRFTDHLDAIKFICKDFWSELFKKQIDNLKTNHRGTFV 330
++++ +G++VG L ER+T + RF D LD +KFICKDFW+ +FKKQIDNL+TNH+G +V
Sbjct: 34 TKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYV 93
Query: 331 LQDNRFRWLSRMS 369
LQDN+FR L++MS
Sbjct: 94 LQDNKFRLLTQMS 106
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus
musculus GN=Trappc6b PE=2 SV=1
Length = 158
Score = 97 bits (241), Expect = 6e-020
Identities = 41/73 (56%), Positives = 60/73 (82%)
Frame = +1
Query: 151 SRIDAIGYQVGHQLSERYTMERPRFTDHLDAIKFICKDFWSELFKKQIDNLKTNHRGTFV 330
++++++G++VG L ER+T + RF D LD +KFICKDFW+ +FKKQIDNL+TNH+G +V
Sbjct: 34 TKLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYV 93
Query: 331 LQDNRFRWLSRMS 369
LQDN+FR L ++S
Sbjct: 94 LQDNKFRLLIQLS 106
>sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A OS=Mus
musculus GN=Trappc6a PE=2 SV=1
Length = 159
Score = 87 bits (213), Expect = 1e-016
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 11/105 (10%)
Frame = +1
Query: 85 LLTEMVSMYCNRLYANKPE-------LAASRIDAIGYQVGHQLSERYTMERPRFTDHLDA 243
L TEMV+ L+A P+ + S ++ +G++VG L ER +E P F + LDA
Sbjct: 10 LHTEMVA----ELWAPDPDPGSGGKRRSLSVLEGLGFRVGQALGERLPLETPAFREELDA 65
Query: 244 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRMSLDP 378
+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F L M P
Sbjct: 66 LKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLVTMGSGP 110
>sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subunit 6A OS=Homo
sapiens GN=TRAPPC6A PE=1 SV=2
Length = 159
Score = 83 bits (203), Expect = 2e-015
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 11/102 (10%)
Frame = +1
Query: 85 LLTEMVSMYCNRLYANKPE-------LAASRIDAIGYQVGHQLSERYTMERPRFTDHLDA 243
L TEMV+ L+A+ P+ ++ S ++ +G++VG L ER E F + LD
Sbjct: 10 LHTEMVA----ELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLPRETLAFREELDV 65
Query: 244 IKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRMS 369
+KF+CKD W +F+KQ+D+L+TNH+GT+VLQDN F L M+
Sbjct: 66 LKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMA 107
>sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subunit 6A OS=Bos
taurus GN=TRAPPC6A PE=2 SV=1
Length = 159
Score = 80 bits (197), Expect = 8e-015
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +1
Query: 157 IDAIGYQVGHQLSERYTMERPRFTDHLDAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 336
++ +G++VG L ER E F + LD +KF+CKD W +F KQ+D+L+TNH+GT+VLQ
Sbjct: 37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQ 96
Query: 337 DNRFRWLSRMS 369
DN F L RM+
Sbjct: 97 DNSFPLLVRMA 107
>sp|Q09784|YA95_SCHPO Uncharacterized protein C13G6.05c OS=Schizosaccharomyces
pombe GN=SPAC13G6.05c PE=1 SV=2
Length = 245
Score = 80 bits (196), Expect = 1e-014
Identities = 32/82 (39%), Positives = 54/82 (65%)
Frame = +1
Query: 157 IDAIGYQVGHQLSERYTMERPRFTDHLDAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 336
+++IG+QVG +++ER + R R T+ D ++F+C++ W +F+K +DNLKTN RG FVL
Sbjct: 43 LESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLT 102
Query: 337 DNRFRWLSRMSLDPSAENGDVS 402
D F W ++M+ E ++
Sbjct: 103 DTYFYWFTKMTAMTGTEMAQIT 124
>sp|Q99394|TRS33_YEAST Transport protein particle 33 kDa subunit
OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1
Length = 268
Score = 73 bits (178), Expect = 1e-012
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = +1
Query: 139 ELAASRIDAIGYQVGHQLSERYTME-----RPRFTDHLDAIKFICKDFWSELFKKQIDNL 303
E +R+ IG+Q+G +LSE + + D L +KFIC+D W ++F KQIDNL
Sbjct: 117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNL 176
Query: 304 KTNHRGTFVLQDNRFRWLSRMSLDPSAENGDV 399
KTNHRGTF L D +R + SL+ A+N ++
Sbjct: 177 KTNHRGTFYLLDYDYRPIQSFSLEEDAKNEEL 208
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,639,061,295
Number of Sequences: 462764
Number of Extensions: 27639061295
Number of Successful Extensions: 270866551
Number of sequences better than 0.0: 0
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