BLASTX 7.6.2
Query= RU25085 /QuerySize=571
(570 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana... 140 7e-033
sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoi... 64 4e-010
sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1 54 7e-007
sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1 54 7e-007
sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1 54 7e-007
sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 ... 54 7e-007
sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS... 50 8e-006
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2
SV=1
Length = 159
Score = 140 bits (351), Expect = 7e-033
Identities = 68/92 (73%), Positives = 75/92 (81%)
Frame = +2
Query: 2 EEKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEAL 181
E+KRTIAPEHVLKALQVLGF EYIEEVYAAYEQHK ET+ D +SVKW GA+MTEEEA
Sbjct: 65 EDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAA 124
Query: 182 AEQQRMFAEARARMNGGATAPKQPDPDQSLES 277
AEQQRMFAEARARMNGG + P+ P+ S
Sbjct: 125 AEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1
PE=3 SV=1
Length = 178
Score = 64 bits (155), Expect = 4e-010
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 2 EEKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEAL 181
E+KRTIA EHV+KAL LGFS+Y ++V Y++HK+E S K+ N + T E+ +
Sbjct: 62 EQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPT-EQLI 120
Query: 182 AEQQRMFAEARARMNGGATA 241
EQQ +FA+AR+ A
Sbjct: 121 REQQLLFAKARSAFQASPEA 140
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 54 bits (127), Expect = 7e-007
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 EKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEALA 184
EK+TI+PEHV++AL+ LGF YI EV ++ K + S + N + EEE L
Sbjct: 62 EKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLR 120
Query: 185 EQQRMFAEAR 214
+QQ +FA+AR
Sbjct: 121 QQQELFAKAR 130
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 54 bits (127), Expect = 7e-007
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 EKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEALA 184
EK+TI+PEHV++AL+ LGF YI EV ++ K + S + N + EEE L
Sbjct: 62 EKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLR 120
Query: 185 EQQRMFAEAR 214
+QQ +FA+AR
Sbjct: 121 QQQELFAKAR 130
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 54 bits (127), Expect = 7e-007
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 EKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEALA 184
EK+TI+PEHV++AL+ LGF YI EV ++ K + S + N + EEE L
Sbjct: 62 EKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLR 120
Query: 185 EQQRMFAEAR 214
+QQ +FA+AR
Sbjct: 121 QQQELFAKAR 130
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 54 bits (127), Expect = 7e-007
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 EKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHKIETVHDVAKSVKWGNGAEMTEEEALA 184
EK+TI+PEHV++AL+ LGF YI EV ++ K + S + N + EEE L
Sbjct: 62 EKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLR 120
Query: 185 EQQRMFAEAR 214
+QQ +FA+AR
Sbjct: 121 QQQELFAKAR 130
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae GN=NCB2 PE=1 SV=1
Length = 146
Score = 50 bits (118), Expect = 8e-006
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = +2
Query: 2 EEKRTIAPEHVLKALQVLGFSEYI---EEVYAAYE-QHKIETVHDVAKSVKWGNGAEMTE 169
E K+TIAPEHV+KAL+ L ++E+I EE+ ++ K++ D +K K G ++E
Sbjct: 59 EAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRD-SKFKKSG----LSE 113
Query: 170 EEALAEQQRMFAEARARMN 226
EE L +Q+ +F ++R+R++
Sbjct: 114 EELLRQQEELFRQSRSRLH 132
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,639,061,295
Number of Sequences: 462764
Number of Extensions: 27639061295
Number of Successful Extensions: 270866551
Number of sequences better than 0.0: 0
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