BLASTX 7.6.2
Query= RU25531 /QuerySize=408
(407 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Or... 193 2e-049
sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Or... 189 4e-048
sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus... 132 5e-031
sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattu... 132 5e-031
sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos... 132 6e-031
sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Hom... 131 1e-030
sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos... 130 2e-030
sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Hom... 130 2e-030
sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus... 130 2e-030
sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Sch... 129 4e-030
sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Dro... 127 2e-029
sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragmen... 87 1e-017
sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein... 70 2e-012
sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxilia... 60 3e-009
sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxilia... 60 3e-009
sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxilia... 59 4e-009
sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxilia... 50 2e-006
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa
subsp. japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 193 bits (489), Expect = 2e-049
Identities = 92/129 (71%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH KPS+SPTLLLSNMY RPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
+D QG +DP KIQ + SKYG+IESL++CDN ADHM+GNVYVQFREE+
Sbjct: 62 IDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQ 121
Query: 28 AAAALQNLT 2
AA ALQ LT
Sbjct: 122 AARALQALT 130
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa
subsp. japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 189 bits (478), Expect = 4e-048
Identities = 85/124 (68%), Positives = 103/124 (83%), Gaps = 1/124 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH +P++SPT++L+NMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VD QGQ +DP K+Q++ SK+G++E+LN+CDNLADHM+GNVYVQFREEE
Sbjct: 62 VDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQ 121
Query: 28 AAAA 17
A AA
Sbjct: 122 AVAA 125
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus
GN=U2af1l4 PE=1 SV=1
Length = 220
Score = 132 bits (331), Expect = 5e-031
Identities = 63/128 (49%), Positives = 78/128 (60%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T++L N+Y+ P
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
D + KYG+IE +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ L
Sbjct: 123 AERAVAEL 130
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus
GN=U2af1l4 PE=2 SV=1
Length = 220
Score = 132 bits (331), Expect = 5e-031
Identities = 63/128 (49%), Positives = 78/128 (60%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T++L N+Y+ P
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
D + KYG+IE +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ L
Sbjct: 123 AERAVAEL 130
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus
GN=U2AF1L4 PE=2 SV=1
Length = 220
Score = 132 bits (330), Expect = 6e-031
Identities = 63/128 (49%), Positives = 78/128 (60%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T++L N+Y+ P
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
D + KYG+IE +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ L
Sbjct: 123 AERAVVEL 130
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens
GN=U2AF1L4 PE=1 SV=2
Length = 220
Score = 131 bits (328), Expect = 1e-030
Identities = 62/129 (48%), Positives = 78/129 (60%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T++L N+Y+ P
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
D + KYG+IE +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNLT 2
A+ L+
Sbjct: 123 GERAVAELS 131
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus
GN=U2AF1 PE=2 SV=1
Length = 237
Score = 130 bits (325), Expect = 2e-030
Identities = 62/128 (48%), Positives = 80/128 (62%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T+ L N+Y+ P +
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
+ D + KYG++E +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ +L
Sbjct: 123 AEKAVIDL 130
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens
GN=U2AF1 PE=1 SV=3
Length = 240
Score = 130 bits (325), Expect = 2e-030
Identities = 62/128 (48%), Positives = 80/128 (62%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T+ L N+Y+ P +
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
+ D + KYG++E +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ +L
Sbjct: 123 AEKAVIDL 130
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus
GN=U2af1 PE=2 SV=4
Length = 239
Score = 130 bits (325), Expect = 2e-030
Identities = 62/128 (48%), Positives = 80/128 (62%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T+ L N+Y+ P +
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSA 62
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
+ D + KYG++E +N+CDNL DH+VGNVYV+FR EE
Sbjct: 63 DGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 28 AAAALQNL 5
A A+ +L
Sbjct: 123 AEKAVIDL 130
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit
OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 129 bits (323), Expect = 4e-030
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Frame = -2
Query: 385 HLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPGV 206
HLASI+GTE+D+VNC FY+KI CRHG++CSR H KP+ S T+L NMY+ NP
Sbjct: 4 HLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYK------NPIH 57
Query: 205 DPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEHA 26
+P G+ R++ + SKYG++E L +CDN+ DH+VGNVYV+F+ EE A
Sbjct: 58 EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESA 117
Query: 25 AAALQNL 5
A+ +L
Sbjct: 118 QNAIDDL 124
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila
melanogaster GN=U2af38 PE=1 SV=2
Length = 264
Score = 127 bits (317), Expect = 2e-029
Identities = 64/133 (48%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
E+LASIFGTEKD+VNC FYFKI CRHGD+CSR+H KP+ S T+LL N+Y P N
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQ---NSA 59
Query: 208 VDPQGQAL-----DPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQF 44
G L D + KYG+IE +N+CDNL DH+VGNVY++F
Sbjct: 60 KSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 119
Query: 43 REEEHAAAALQNL 5
R E A A +L
Sbjct: 120 RNEADAEKAANDL 132
>sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus
scrofa GN=U2AF1 PE=3 SV=3
Length = 82
Score = 87 bits (215), Expect = 1e-017
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRP 230
E+LASIFGTEKD+VNC FYFKI CRHGD+CSRLH KP+ S T++L N+Y+ P
Sbjct: 3 EYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNP 55
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza
sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 70 bits (171), Expect = 2e-012
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = -2
Query: 361 EKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPGVDPQGQALD 182
++D+ +CPF+ K CR G +CSR+H P S TLL+ NMY P + +G
Sbjct: 163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALE---QDEGLECT 219
Query: 181 PRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEHAAAALQNL 5
+I+ + K+G++ + +C N + H+ GNVYV ++ + A A ++
Sbjct: 220 DEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSM 278
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2
Length = 479
Score = 60 bits (143), Expect = 3e-009
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = -2
Query: 361 EKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMY 239
EKDR NCPFY K CR GD+CSR H P+ SPTLL+ +M+
Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 211
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2
Length = 482
Score = 60 bits (143), Expect = 3e-009
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = -2
Query: 361 EKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMY 239
EKDR NCPFY K CR GD+CSR H P+ SPTLL+ +M+
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 206
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1
Length = 462
Score = 59 bits (142), Expect = 4e-009
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = -2
Query: 361 EKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMY 239
EKDR NCPFY K CR GD+CSR H P+ SPTLL+ M+
Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMF 210
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2 SV=1
Length = 428
Score = 50 bits (119), Expect = 2e-006
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = -2
Query: 361 EKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMY 239
EK R +CPFY K CR G++CSR H P+ SPTLL+ +M+
Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMF 197
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,639,061,295
Number of Sequences: 462764
Number of Extensions: 27639061295
Number of Successful Extensions: 270866551
Number of sequences better than 0.0: 0
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