BLASTX 7.6.2
Query= RU44524 /QuerySize=406
(405 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS... 151 1e-036
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS... 151 1e-036
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS... 151 1e-036
sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protei... 138 6e-033
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protei... 109 3e-024
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS... 69 5e-012
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus
GN=LSM3 PE=3 SV=3
Length = 102
Score = 151 bits (380), Expect = 1e-036
Identities = 70/87 (80%), Positives = 83/87 (95%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V+EPLD+IRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VT++EID+ETYEE
Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPPLR 359
I ++TKR +P LFVRGDGV+LV+PPLR
Sbjct: 74 IYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens
GN=LSM3 PE=1 SV=2
Length = 102
Score = 151 bits (380), Expect = 1e-036
Identities = 70/87 (80%), Positives = 83/87 (95%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V+EPLD+IRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VT++EID+ETYEE
Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPPLR 359
I ++TKR +P LFVRGDGV+LV+PPLR
Sbjct: 74 IYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus
GN=Lsm3 PE=2 SV=2
Length = 102
Score = 151 bits (380), Expect = 1e-036
Identities = 70/87 (80%), Positives = 83/87 (95%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V+EPLD+IRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VT++EID+ETYEE
Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEE 73
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPPLR 359
I ++TKR +P LFVRGDGV+LV+PPLR
Sbjct: 74 IYKSTKRNIPMLFVRGDGVVLVAPPLR 100
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 138 bits (347), Expect = 6e-033
Identities = 67/89 (75%), Positives = 77/89 (86%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V+EPLD+IRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE D+ET EE
Sbjct: 9 VEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEE 68
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPPLRTA 365
I+R KR + LFVRGDGVIL+SPPLRT+
Sbjct: 69 IIRNIKRNIKMLFVRGDGVILISPPLRTS 97
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2
Length = 93
Score = 109 bits (272), Expect = 3e-024
Identities = 50/85 (58%), Positives = 67/85 (78%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V EPLD++RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD EEIVT + ++ ++
Sbjct: 7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDK 66
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPP 353
++T ++ LFVRGD VIL++PP
Sbjct: 67 ALKTIRKHYEMLFVRGDSVILIAPP 91
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae GN=LSM3 PE=1 SV=1
Length = 89
Score = 69 bits (167), Expect = 5e-012
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 6/85 (7%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
++ PLD+++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E
Sbjct: 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSE 58
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPP 353
++R +F+RGD V L+S P
Sbjct: 59 ----SERRCEMVFIRGDTVTLISTP 79
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,621,414,376
Number of Sequences: 462764
Number of Extensions: 39621414376
Number of Successful Extensions: 367225502
Number of sequences better than 0.0: 0
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