BLASTX 7.6.2
Query= RU45059 /QuerySize=839
(838 letters)
Database: UniProt/Swiss-Prot;
462,764 sequences; 163,773,382 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subunit 4 O... 376 2e-103
sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=... 312 2e-084
sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5... 310 1e-083
sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 O... 310 1e-083
sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 O... 309 2e-083
sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5... 307 5e-083
sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 O... 307 7e-083
sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 O... 306 1e-082
sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5... 306 2e-082
sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5... 305 3e-082
sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 O... 305 3e-082
sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex su... 294 6e-079
sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 O... 294 6e-079
sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex su... 276 1e-073
sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex su... 276 2e-073
sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=P... 162 4e-039
sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=P... 160 1e-038
sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=M... 159 2e-038
sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=M... 159 3e-038
sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=A... 158 5e-038
sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=P... 158 7e-038
sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=M... 156 2e-037
sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=P... 155 3e-037
sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=M... 154 6e-037
sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=T... 154 8e-037
sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=A... 153 2e-036
sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=M... 152 3e-036
sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=M... 149 2e-035
sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=M... 142 4e-033
sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=P... 141 5e-033
>sp|Q9LD90|DKC1_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis
thaliana GN=NAP57 PE=1 SV=1
Length = 565
Score = 376 bits (963), Expect = 2e-103
Identities = 179/196 (91%), Positives = 191/196 (97%)
Frame = +2
Query: 212 DYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNL 391
DYMIKPQS TP++DTSQWPILLKNYDRLNVRTGHYTP+ +G+SPLKRPL EYIRYGV+NL
Sbjct: 26 DYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINL 85
Query: 392 DKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 571
DKPANPSSHE AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 86 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 145
Query: 572 CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLV 751
CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL+IRTIYESKLLEYDA++HLV
Sbjct: 146 CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLV 205
Query: 752 VFWISCEAGTYVRTLC 799
VFW+SCEAGTY+RT+C
Sbjct: 206 VFWVSCEAGTYIRTMC 221
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus
norvegicus GN=Dkc1 PE=1 SV=4
Length = 509
Score = 312 bits (798), Expect = 2e-084
Identities = 144/197 (73%), Positives = 174/197 (88%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
+D++IKP+S LDTSQWP+LLKN+DRLNVRT HYTP+P G +PLKR + EY+R G +N
Sbjct: 35 EDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFIN 94
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 95 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 154
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
V V RLH+A+ A+++RALE+LTGA+FQRPPLI+AVKRQL++RTIYES+++EYD E+ L
Sbjct: 155 VGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRL 214
Query: 749 VVFWISCEAGTYVRTLC 799
VFW+SCEAGTY+RTLC
Sbjct: 215 GVFWVSCEAGTYIRTLC 231
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida
albicans GN=CBF5 PE=3 SV=1
Length = 479
Score = 310 bits (792), Expect = 1e-083
Identities = 144/197 (73%), Positives = 173/197 (87%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
+DY+IKP+S +PS DTSQWP+LLKNYD+L VR+GHYTP+P+G +PL R + Y+ GV+N
Sbjct: 5 EDYIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVIN 64
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 65 LDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 124
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
VC+ RLH + D ++ RALE+LTGA+FQRPPLISAVKRQL++RT+Y+SKL+E+D ++ L
Sbjct: 125 VCIVRLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGL 184
Query: 749 VVFWISCEAGTYVRTLC 799
VFW SCEAGTY+RTLC
Sbjct: 185 GVFWASCEAGTYMRTLC 201
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus
GN=DKC1 PE=2 SV=1
Length = 516
Score = 310 bits (792), Expect = 1e-083
Identities = 142/197 (72%), Positives = 175/197 (88%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
++++IKP+S LDTSQWP+LLKN+D+LNV T HYTPLPSG +PLKR +++Y+R G +N
Sbjct: 32 EEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFIN 91
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 92 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 151
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
V + RLH+A+ A++ARA+E+LTGA+FQRPPLI+AVKRQL++RTIYESKL+EYD E+ L
Sbjct: 152 VGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERRL 211
Query: 749 VVFWISCEAGTYVRTLC 799
+FW+SCEAGTY+RTLC
Sbjct: 212 GIFWVSCEAGTYIRTLC 228
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus
GN=Dkc1 PE=1 SV=3
Length = 509
Score = 309 bits (789), Expect = 2e-083
Identities = 141/197 (71%), Positives = 173/197 (87%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
++++IKP+S LDTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + +YIR G +N
Sbjct: 34 EEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFIN 93
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
V + RLH+A+ +++RALE+LTGA+FQRPPLI+AVKRQL++RTIYESK++EYD E+ L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 749 VVFWISCEAGTYVRTLC 799
+FW+SCEAGTY+RTLC
Sbjct: 214 GIFWVSCEAGTYIRTLC 230
>sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella
nidulans GN=cbf5 PE=2 SV=1
Length = 481
Score = 307 bits (786), Expect = 5e-083
Identities = 146/197 (74%), Positives = 170/197 (86%), Gaps = 1/197 (0%)
Frame = +2
Query: 212 DYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNL 391
DY IKP+++ +++T WP+LLKNYD+L VRTGH+TP+P+G SPLKR L YI GV+NL
Sbjct: 6 DYTIKPEATASNINTEDWPLLLKNYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINL 65
Query: 392 DKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 571
DKP+NPSSHE AW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 125
Query: 572 CVARLHSAVP-DVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
CV RLH +P A+ RALE+LTGA+FQRPPLISAVKRQL+IRTI+ESKL E+D E+HL
Sbjct: 126 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 185
Query: 749 VVFWISCEAGTYVRTLC 799
VFW+SCEAGTY+RTLC
Sbjct: 186 GVFWVSCEAGTYIRTLC 202
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4
OS=Schizosaccharomyces pombe GN=cbf5 PE=2 SV=1
Length = 474
Score = 307 bits (785), Expect = 7e-083
Identities = 144/197 (73%), Positives = 174/197 (88%), Gaps = 1/197 (0%)
Frame = +2
Query: 212 DYMIKPQSSTPS-LDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
D+MIKP++++ S +DT++WP+LLKN+D+L VRTGHYTP+P G +PLKRP+AEY+ GV+N
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKPANPSSHE AW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
VCV RLH +V VA A+E+LTGA+FQRPPLISAVKRQL+IR+IYESKL+E+D E++L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188
Query: 749 VVFWISCEAGTYVRTLC 799
VFW SCEAGTY+RTLC
Sbjct: 189 AVFWASCEAGTYMRTLC 205
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces
cerevisiae GN=CBF5 PE=1 SV=1
Length = 483
Score = 306 bits (783), Expect = 1e-082
Identities = 143/197 (72%), Positives = 172/197 (87%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
+D++IKP+++ S DTS+WP+LLKN+D+L VR+GHYTP+P+G SPLKR L YI GV+N
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
VC+ RLH A+ D + R+LE+LTGA+FQRPPLISAVKRQL++RTIYES L+E+D +++L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 749 VVFWISCEAGTYVRTLC 799
VFW SCEAGTY+RTLC
Sbjct: 184 GVFWASCEAGTYMRTLC 200
>sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Aspergillus
fumigatus GN=cbf5 PE=2 SV=1
Length = 487
Score = 306 bits (782), Expect = 2e-082
Identities = 145/199 (72%), Positives = 169/199 (84%), Gaps = 1/199 (0%)
Frame = +2
Query: 206 DQDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVL 385
+ DY IKP++ ++ T WP+LLKNYD+L VRTGH+TP+P+G SPLKR L YI GV+
Sbjct: 9 EMDYTIKPEAGASNISTEDWPLLLKNYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVI 68
Query: 386 NLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 565
NLDKP+NPSSHE AW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 69 NLDKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 128
Query: 566 YVCVARLHSAVP-DVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEK 742
YVCV RLH +P A+ RALE+LTGA+FQRPPLISAVKRQL+IRTI+ESKL E+D ++
Sbjct: 129 YVCVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDR 188
Query: 743 HLVVFWISCEAGTYVRTLC 799
HL VFW+SCEAGTY+RTLC
Sbjct: 189 HLGVFWVSCEAGTYIRTLC 207
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5
OS=Kluyveromyces lactis GN=CBF5 PE=3 SV=1
Length = 474
Score = 305 bits (779), Expect = 3e-082
Identities = 141/199 (70%), Positives = 173/199 (86%)
Frame = +2
Query: 203 VDQDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGV 382
+ +++IKP+S +PS +TS+WP+LLK+YD+L VR+GHYTP+P+G SPLKR L YI GV
Sbjct: 1 MSDEFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGV 60
Query: 383 LNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 562
+NLDKP+NPSSHE AWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGK
Sbjct: 61 INLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGK 120
Query: 563 EYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEK 742
EYVC+ RLH A+ D ++ R LE+LTGA+FQRPPLISAVKRQL++RTIY+S L+E+D ++
Sbjct: 121 EYVCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKR 180
Query: 743 HLVVFWISCEAGTYVRTLC 799
+L VFW SCEAGTY+RTLC
Sbjct: 181 NLGVFWASCEAGTYMRTLC 199
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 OS=Homo sapiens
GN=DKC1 PE=1 SV=3
Length = 514
Score = 305 bits (779), Expect = 3e-082
Identities = 140/197 (71%), Positives = 172/197 (87%)
Frame = +2
Query: 209 QDYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLN 388
++++IKP+S LDTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + +YIR G +N
Sbjct: 34 EEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFIN 93
Query: 389 LDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 568
LDKP+NPSSHE AWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 569 VCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHL 748
V + RLH+A+ +++RALE+LTGA+FQRPPLI+AVKRQL++RTIYESK++EYD E+ L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 749 VVFWISCEAGTYVRTLC 799
+FW+SCEAGTY+RTLC
Sbjct: 214 GIFWVSCEAGTYIRTLC 230
>sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4
OS=Dictyostelium discoideum GN=nola4 PE=2 SV=1
Length = 540
Score = 294 bits (751), Expect = 6e-079
Identities = 132/196 (67%), Positives = 172/196 (87%), Gaps = 1/196 (0%)
Frame = +2
Query: 212 DYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNL 391
+ +IKP+ TP LDTS+WP+LLKNYD+L+VRTGHYTP+P+G+SPLKRP+ EY++YG++NL
Sbjct: 20 EQVIKPE-KTPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINL 78
Query: 392 DKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 571
DKP+NPSSHE AWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+
Sbjct: 79 DKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYI 138
Query: 572 CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLV 751
+ RLH A+ ++++A+++LTGA+FQRPP SAVK++L++RTI+ SKLLE+D E++L
Sbjct: 139 GIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHNSKLLEFDPERNLG 198
Query: 752 VFWISCEAGTYVRTLC 799
+ W+ CEAGTY+RTLC
Sbjct: 199 LIWVDCEAGTYIRTLC 214
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila
melanogaster GN=Nop60B PE=1 SV=1
Length = 508
Score = 294 bits (751), Expect = 6e-079
Identities = 135/196 (68%), Positives = 165/196 (84%)
Frame = +2
Query: 212 DYMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNL 391
++ IKP S LDTSQWP+LLKN+D+LN+R+ HYTPL G SPL R + EY++ G +NL
Sbjct: 33 NFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINL 92
Query: 392 DKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 571
DKP+NPSSHE AWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 93 DKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 152
Query: 572 CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLV 751
+ +LH AV VAKV + LE L GA+FQRPPLISAVKRQL++RT+Y+SKLL+YD +++
Sbjct: 153 AIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMG 212
Query: 752 VFWISCEAGTYVRTLC 799
VFW+SCEAG+Y+RT+C
Sbjct: 213 VFWVSCEAGSYIRTMC 228
>sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis briggsae GN=CBG18316 PE=3 SV=1
Length = 445
Score = 276 bits (705), Expect = 1e-073
Identities = 130/195 (66%), Positives = 153/195 (78%)
Frame = +2
Query: 215 YMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNLD 394
+ + + T LD SQWP+LLKNYD+LNVRT HYTP G SPLKR + YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 395 KPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 574
KP+NPSSHE +WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 575 VARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLVV 754
+ +LH V D KV +ALE LTGA+FQRPPLISAVKRQL+IRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDERKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 755 FWISCEAGTYVRTLC 799
F CE+GTYVRT+C
Sbjct: 204 FNCICESGTYVRTIC 218
>sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis elegans GN=K01G5.5 PE=2 SV=1
Length = 445
Score = 276 bits (704), Expect = 2e-073
Identities = 130/195 (66%), Positives = 153/195 (78%)
Frame = +2
Query: 215 YMIKPQSSTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVLNLD 394
+ + + T LD SQWP+LLKNYD+LNVRT HYTP G SPLKR + YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 395 KPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 574
KP+NPSSHE +WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 575 VARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLVV 754
+ +LH V D KV +ALE LTGA+FQRPPLISAVKRQL+IRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 755 FWISCEAGTYVRTLC 799
F CE+GTYVRT+C
Sbjct: 204 FNCICESGTYVRTIC 218
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus
abyssi GN=truB PE=1 SV=1
Length = 334
Score = 162 bits (408), Expect = 4e-039
Identities = 81/155 (52%), Positives = 109/155 (70%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G+ P KRP+ +I+YGV+NLDKP P+SHE AWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y ++LE D V+F + EAGTY+R+L
Sbjct: 151 RTRKVYYIEILEIDGRD--VLFRVGVEAGTYIRSL 183
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus
horikoshii GN=truB PE=3 SV=1
Length = 334
Score = 160 bits (403), Expect = 1e-038
Identities = 79/155 (50%), Positives = 109/155 (70%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G+ P +RP+ +I+YGV+NLDKP P+SHE AWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPYERPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
+++ATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-NKIIDVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y ++LE D V+F + EAGTY+R+L
Sbjct: 151 RTRKVYYIEILEIDGRD--VLFKVGVEAGTYIRSL 183
>sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=truB PE=3 SV=1
Length = 338
Score = 159 bits (401), Expect = 2e-038
Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 4/172 (2%)
Frame = +2
Query: 287 DRLNVR-TGHYTPLPSGYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKT 463
+R+ VR +G +T G P KRP+ EYI GV+N+DKP P+SHE AW+K IL V
Sbjct: 12 ERILVRKSGAWTNPSYGSYPEKRPILEYIEKGVVNIDKPKGPTSHEVAAWVKAILGVSTA 71
Query: 464 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTG 643
GH+G+LDPKVTG L + +AT+ V + + +GKEYVC+ +LH +P V + E TG
Sbjct: 72 GHAGSLDPKVTGLLPTLLGKATKAVPALRLSGKEYVCLLKLHKEMPQ-KLVRKVCEEFTG 130
Query: 644 AVFQRPPLISAVKRQLKIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
++Q PP+ SAVKR ++IRTIY ++LE E V+F + CEAGTY+R LC
Sbjct: 131 PIYQMPPIKSAVKRVIRIRTIYYLEVLE--IEGSFVLFRVGCEAGTYIRKLC 180
>sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=Methanosarcina
acetivorans GN=truB PE=3 SV=1
Length = 338
Score = 159 bits (400), Expect = 3e-038
Identities = 79/166 (47%), Positives = 112/166 (67%), Gaps = 3/166 (1%)
Frame = +2
Query: 302 RTGHYTPLPSGYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTL 481
++G +T G +P KRP+ EYI GV+N+DKP+ P+SHE AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPVYGCAPEKRPILEYIEKGVVNIDKPSGPTSHEVAAWVKAILGVNTAGHAGSL 77
Query: 482 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRP 661
DPKVTG L + +AT+ V + + +GKEYVC +LH A+P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCHLKLHRAMPP-KLVRKVCEEFTGPIYQMP 136
Query: 662 PLISAVKRQLKIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
P+ SAVKR +++RTIY ++LE + V+F + CEAGTY+R LC
Sbjct: 137 PIKSAVKRVIRVRTIYYIEVLEIEGMS--VLFRVGCEAGTYIRKLC 180
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus
fulgidus GN=truB PE=3 SV=1
Length = 325
Score = 158 bits (398), Expect = 5e-038
Identities = 82/158 (51%), Positives = 108/158 (68%), Gaps = 7/158 (4%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G P KRP+ EYIR G++ +DKP PSSHE W++RIL V KTGH+GTLDP+VTG L +
Sbjct: 19 GCYPTKRPMEEYIRKGLVCIDKPMGPSSHEVVVWVRRILNVSKTGHAGTLDPRVTGVLPI 78
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAV--PDVAKVARALESLTGAVFQRPPLISAVKR 685
I+ AT++VK Q + KEYVC+ RLH DV KV ++ G ++QRPPL SAVK+
Sbjct: 79 FIENATKMVKFLQESSKEYVCLMRLHGDAKREDVEKV---MKLFVGRIYQRPPLKSAVKK 135
Query: 686 QLKIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
L+IR IYE +LLE + V+F + E+GTY+R LC
Sbjct: 136 VLRIREIYEMELLEMEGRD--VLFRVVTESGTYIRKLC 171
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus
furiosus GN=truB PE=1 SV=1
Length = 340
Score = 158 bits (397), Expect = 7e-038
Identities = 77/155 (49%), Positives = 110/155 (70%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G+ P KRP+ +I++GV+NLDKP P+SHE AWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 91
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y ++LE + V+F + EAGTY+R+L
Sbjct: 151 RTRKVYYIEVLEIEGRD--VLFRVGVEAGTYIRSL 183
>sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=Methanosarcina
mazei GN=truB PE=3 SV=1
Length = 338
Score = 156 bits (394), Expect = 2e-037
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Frame = +2
Query: 302 RTGHYTPLPSGYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTL 481
++G +T G P KRP+ EYI GV+N+DKP P+SHE AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 482 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRP 661
DPKVTG L + +AT V + + +GKEY+C +LH A+P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAMPQ-KLVRQVCEEFTGPIYQMP 136
Query: 662 PLISAVKRQLKIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
P+ SAVKR +++RTIY ++LE + V+F + CEAGTY+R LC
Sbjct: 137 PIKSAVKRVIRVRTIYHLEVLEIEGTS--VLFRVGCEAGTYIRKLC 180
>sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=Pyrococcus
kodakaraensis GN=truB PE=3 SV=1
Length = 338
Score = 155 bits (391), Expect = 3e-037
Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G+ P KRP+ +I++G++NLDKP P+SHE AW+KRIL + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGIINLDKPPGPTSHEVVAWVKRILNLNKAGHGGTLDPKVSGVLPV 91
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++RATR+V++ AGKEYV + LH VP+ K+ + G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKILAVMREFQGEIIQRPPLRSAVKRRL 150
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y +LE + V+F + EAGTY+R+L
Sbjct: 151 RTRKVYYIDVLEIEGRD--VLFRVGVEAGTYIRSL 183
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanobacterium
thermoautotrophicum GN=truB PE=3 SV=1
Length = 324
Score = 154 bits (389), Expect = 6e-037
Identities = 79/156 (50%), Positives = 105/156 (67%), Gaps = 3/156 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G P +R + +I GV+NLDKP+ P+SH+ +W++ +L VEK GH GTLDPKVTG L +
Sbjct: 22 GCPPAERDIEAHISMGVVNLDKPSGPTSHQVDSWVRDMLHVEKVGHGGTLDPKVTGVLPL 81
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
IDRATR+++ A KEYVC+ R+H V D ++ L G +FQ PPL SAVKR L
Sbjct: 82 GIDRATRVMQLLLEAPKEYVCLMRVHREV-DEERIREVLGEFQGKIFQIPPLKSAVKRDL 140
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
++RTIY +LE D + V+F I+CEAGTYVR C
Sbjct: 141 RVRTIYRVDILEVDGQD--VLFRIACEAGTYVRKYC 174
>sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=Thermococcus
onnurineus (strain NA1) GN=truB PE=3 SV=1
Length = 334
Score = 154 bits (388), Expect = 8e-037
Identities = 73/155 (47%), Positives = 108/155 (69%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G+ P KRP+ ++++G++NLDKP P+SHE AW+K++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLPV 91
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGEVPE-DKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y ++LE D + V+F + EAGTY+R+L
Sbjct: 151 RTRKVYYIEILEIDGKD--VLFRVGVEAGTYIRSL 183
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix
GN=truB PE=3 SV=2
Length = 354
Score = 153 bits (385), Expect = 2e-036
Identities = 75/156 (48%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
GY P +RPL Y+RYG++ +DKP P+SHE AWIKR+L V + GH GTLDPKVTG L V
Sbjct: 42 GYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPV 101
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++R TR++ + + KEYVCV +LH V + ++ L+ G ++Q+PPL S+VKR L
Sbjct: 102 ALERMTRIIGTVMHSSKEYVCVMQLHRPVEE-DRLREVLKLFEGEIYQKPPLRSSVKRAL 160
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
+ R ++ +LLEY + L+ + CEAGTY+R LC
Sbjct: 161 RTRRVFRIELLEYTGKYALL--RVDCEAGTYMRKLC 194
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus
kandleri GN=truB PE=3 SV=1
Length = 338
Score = 152 bits (383), Expect = 3e-036
Identities = 74/156 (47%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G P +RP+ EYI GV+NLDKPA P+SHE AW+K I + K GH GTLDPKVTG L +
Sbjct: 30 GCPPEERPIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLPI 89
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
+++AT+++++ AGKEYV + LH V D ++ R ++ G + QRPPL SAVKR++
Sbjct: 90 ALEKATKIIQTLLPAGKEYVTIMHLHGDV-DEEELERVVKEFEGTILQRPPLRSAVKRRV 148
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
+ + IY +LE D V+ + C+AGTY+R LC
Sbjct: 149 RPKKIYYIDILEIDGRD--VLMRVGCQAGTYIRKLC 182
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B
OS=Methanocaldococcus jannaschii GN=truB PE=1 SV=1
Length = 336
Score = 149 bits (375), Expect = 2e-035
Identities = 71/156 (45%), Positives = 105/156 (67%), Gaps = 3/156 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G +P +R + + I+YGV+ +DKP P+SHE W+K+IL ++K GH GTLDPKVTG L V
Sbjct: 31 GCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPV 90
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++RAT+ + KEYVC+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 91 ALERATKTIPMWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRL 149
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLC 799
+IR I+E +LL+ D + V+F + C++GTY+R LC
Sbjct: 150 RIRKIHELELLDKDGKD--VLFRVKCQSGTYIRKLC 183
>sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=truB PE=3 SV=1
Length = 331
Score = 142 bits (356), Expect = 4e-033
Identities = 68/155 (43%), Positives = 101/155 (65%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G P RP+ E ++ G++ +DKP+ P+SHE AW++ IL+++ GH GTLDPKVTG L V
Sbjct: 16 GCDPYNRPIGELLKNGIVVIDKPSGPTSHEVSAWVRDILKLKLAGHGGTLDPKVTGVLPV 75
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
++ ++ + KEYVC+ LH + ++ + + TG +FQRPPL +AVKR L
Sbjct: 76 ALENTSKCISVWHMIPKEYVCLMHLHRDTEE-EELLKIFKKFTGRIFQRPPLKAAVKRSL 134
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+IR IYE +LLE D V+F + C++GTY+RTL
Sbjct: 135 RIRKIYELELLEKDGRD--VLFRVRCQSGTYIRTL 167
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 141 bits (355), Expect = 5e-033
Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Frame = +2
Query: 332 GYSPLKRPLAEYIRYGVLNLDKPANPSSHE..AWIKRILRVEKTGHSGTLDPKVTGNLIV 511
G P R E+IRY L LDKP P+SHE AW+K+IL VE+ GHSGTLDPKV+G L V
Sbjct: 21 GKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPV 80
Query: 512 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQL 691
+ T+++ + A K Y+ VA+ H V DV + R L+ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRADKVYIAVAKFHGDV-DVENLRRVLQELQGEIYQKPPLRSAVKRQL 139
Query: 692 KIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTL 796
+ R +Y +LLE D V + EAGTY R L
Sbjct: 140 RTRRVYSLELLELDG--RYAVLKMHVEAGTYARKL 172
Database: UniProt/Swiss-Prot
Posted date: Thu Apr 23 14:22:33 2009
Number of letters in database: 163,773,382
Number of sequences in database: 462,764
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,621,414,376
Number of Sequences: 462764
Number of Extensions: 39621414376
Number of Successful Extensions: 367225502
Number of sequences better than 0.0: 0
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