BLASTX 7.6.2
Query= RU22450 /QuerySize=406
(405 letters)
Database: UniProt/TrEMBL;
7,695,149 sequences; 2,506,224,640 total letters
Score E
Sequences producing significant alignments: (bits) Value
tr|B9RYB6|B9RYB6_RICCO DNA-directed RNA polymerase II subunit, p... 224 2e-057
tr|B9HS44|B9HS44_POPTR Predicted protein OS=Populus trichocarpa ... 221 1e-056
tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis... 219 4e-056
tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago ... 219 4e-056
tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome ... 218 9e-056
tr|Q45NH1|Q45NH1_MEDSA DNA-directed RNA polymerase II third larg... 211 9e-054
tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third lar... 206 4e-052
tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza... 204 1e-051
tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subs... 204 1e-051
tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa pol... 201 9e-051
tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella paten... 201 1e-050
tr|A8MR04|A8MR04_ARATH Uncharacterized protein At2g15400.2 OS=Ar... 183 3e-045
tr|Q0WRA4|Q0WRA4_ARATH DNA-directed RNA polymerase II, third lar... 183 3e-045
tr|A9SM40|A9SM40_PHYPA Predicted protein OS=Physcomitrella paten... 139 4e-032
tr|Q9P5U3|Q9P5U3_NEUCR Probable DNA-directed RNA polymerase II c... 124 2e-027
tr|A3GF98|A3GF98_PICST 45 kDa subunit of RNA polymerase II OS=Pi... 123 3e-027
tr|Q2GNN7|Q2GNN7_CHAGB Putative uncharacterized protein OS=Chaet... 122 7e-027
tr|A8PAX3|A8PAX3_BRUMA DNA-directed RNA polymerase II 33 kDa pol... 121 2e-026
tr|A5DQ44|A5DQ44_PICGU Putative uncharacterized protein OS=Pichi... 120 3e-026
tr|Q6BUW0|Q6BUW0_DEBHA DEHA2C07546p OS=Debaryomyces hansenii GN=... 119 5e-026
tr|Q93338|Q93338_CAEEL Protein C36B1.3, partially confirmed by t... 118 1e-025
tr|A5E4Q9|A5E4Q9_LODEL DNA-directed RNA polymerase II 45 kDa pol... 117 2e-025
tr|A7EJ53|A7EJ53_SCLS1 Putative uncharacterized protein OS=Scler... 117 2e-025
tr|B2B158|B2B158_PODAN Predicted CDS Pa_3_9390 OS=Podospora anse... 116 4e-025
tr|A6S2E5|A6S2E5_BOTFB RNA polymerase II subunit 3 OS=Botryotini... 116 5e-025
tr|B6LMF3|B6LMF3_BRAFL Putative uncharacterized protein OS=Branc... 116 5e-025
tr|B9WGL5|B9WGL5_CANDC DNA-directed RNA polymerase II subunit, p... 116 7e-025
tr|Q5A462|Q5A462_CANAL Putative uncharacterized protein RPB3 OS=... 116 7e-025
tr|B4GX16|B4GX16_DROPE GL21238 OS=Drosophila persimilis GN=GL212... 116 7e-025
tr|A8XFM5|A8XFM5_CAEBR CBR-RPB-3 protein OS=Caenorhabditis brigg... 112 9e-024
>tr|B9RYB6|B9RYB6_RICCO DNA-directed RNA polymerase II subunit, putative
OS=Ricinus communis GN=RCOM_0811900 PE=4 SV=1
Length = 318
Score = 224 bits (569), Expect = 2e-057
Identities = 107/120 (89%), Positives = 116/120 (96%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SYQRFPR+KIRE++ DY KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQC+YCSVEFHLRA+C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
>tr|B9HS44|B9HS44_POPTR Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_1087179 PE=4 SV=1
Length = 346
Score = 221 bits (561), Expect = 1e-056
Identities = 105/120 (87%), Positives = 115/120 (95%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
ME SYQRFP++KIREM+ DYLKFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQCEYCSVEFHLRA+C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
>tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_019338 PE=4 SV=1
Length = 318
Score = 219 bits (557), Expect = 4e-056
Identities = 104/120 (86%), Positives = 116/120 (96%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SYQRFP++KIRE++ DY KFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEFHLRA+C +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
>tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago truncatula
GN=MtrDRAFT_AC147481g15v2 PE=4 SV=1
Length = 318
Score = 219 bits (557), Expect = 4e-056
Identities = 105/120 (87%), Positives = 114/120 (95%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SY R PRVKIRE++ DY+KFELRDTDASVANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
>tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome shotgun
sequence OS=Vitis vinifera GN=GSVIVT00036639001 PE=4 SV=1
Length = 318
Score = 218 bits (554), Expect = 9e-056
Identities = 103/120 (85%), Positives = 116/120 (96%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SYQRFP++KIRE++ DY KFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCE+CSVEFHLRA+C +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
>tr|Q45NH1|Q45NH1_MEDSA DNA-directed RNA polymerase II third largest subunit
(Fragment) OS=Medicago sativa PE=2 SV=1
Length = 184
Score = 211 bits (537), Expect = 9e-054
Identities = 100/115 (86%), Positives = 110/115 (95%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y R PRVKIRE++ DY+KFELRDTDASVANALRRVMI+EVPT+AIDLVEIE+NSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 166 FIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 115
>tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third largest subunit
OS=Arabidopsis thaliana PE=2 SV=1
Length = 319
Score = 206 bits (523), Expect = 4e-052
Identities = 97/120 (80%), Positives = 112/120 (93%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP++KIRE++ DY KFELR+TD S+ANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLI LTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L ++C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
>tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_30378 PE=4 SV=1
Length = 330
Score = 204 bits (518), Expect = 1e-051
Identities = 102/119 (85%), Positives = 109/119 (91%), Gaps = 1/119 (0%)
Frame = -3
Query: 355 GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 176
G SYQRFPRV+IRE++ DY KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+NSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 175 NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC-HSDQTLDV 2
NDEFIAHRLGLIPLTS AM+MRFSRDCDACDGDG CEYCSVEFHL AR SDQTL+V
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEV 125
>tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subsp. japonica
GN=P0646B04.12 PE=2 SV=1
Length = 330
Score = 204 bits (518), Expect = 1e-051
Identities = 102/119 (85%), Positives = 109/119 (91%), Gaps = 1/119 (0%)
Frame = -3
Query: 355 GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 176
G SYQRFPRV+IRE++ DY KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+NSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 175 NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC-HSDQTLDV 2
NDEFIAHRLGLIPLTS AM+MRFSRDCDACDGDG CEYCSVEFHL AR SDQTL+V
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEV 125
>tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa polypeptide A
OS=Zea mays PE=2 SV=1
Length = 328
Score = 201 bits (511), Expect = 9e-051
Identities = 100/123 (81%), Positives = 108/123 (87%), Gaps = 1/123 (0%)
Frame = -3
Query: 367 EKMEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEIN 188
++ G SYQRFPRV+IRE++ DY KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIE+N
Sbjct: 2 DRPSGTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVN 61
Query: 187 SSVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC-HSDQT 11
SSVLNDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL SDQT
Sbjct: 62 SSVLNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQT 121
Query: 10 LDV 2
L+V
Sbjct: 122 LEV 124
>tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_129844 PE=4 SV=1
Length = 324
Score = 201 bits (510), Expect = 1e-050
Identities = 94/120 (78%), Positives = 107/120 (89%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+ SYQRFP V+IR+++ D LKFELRDTDAS+ANALRR+MIAEVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEF+AHRLGLIP+ SDRAM MR SRDCDACDGDG+CEYCS+EFHL +C DQTLDV
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120
>tr|A8MR04|A8MR04_ARATH Uncharacterized protein At2g15400.2 OS=Arabidopsis
thaliana GN=At2g15400 PE=4 SV=1
Length = 235
Score = 183 bits (464), Expect = 3e-045
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP VKIRE++ DY KFELR+TD S+ANALRRVMI+EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIA RL LIPLTS+RAMSMRF +DC+ C+GD CE+CSVEF L A+C +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
>tr|Q0WRA4|Q0WRA4_ARATH DNA-directed RNA polymerase II, third largest subunit
OS=Arabidopsis thaliana GN=At2g15400 PE=2 SV=1
Length = 319
Score = 183 bits (464), Expect = 3e-045
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP VKIRE++ DY KFELR+TD S+ANALRRVMI+EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIA RL LIPLTS+RAMSMRF +DC+ C+GD CE+CSVEF L A+C +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
>tr|A9SM40|A9SM40_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_132119 PE=4 SV=1
Length = 385
Score = 139 bits (350), Expect = 4e-032
Identities = 71/120 (59%), Positives = 86/120 (71%), Gaps = 2/120 (1%)
Frame = -3
Query: 355 GKSYQRFPRVKIRE--MRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
G SY R P V I E + L+F+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VL DEFIAHRLGLIPLTSDRAM M F +CD+C GD C+ C+VEF L + D+ DV
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136
>tr|Q9P5U3|Q9P5U3_NEUCR Probable DNA-directed RNA polymerase II chain RPB3
OS=Neurospora crassa GN=B5O22.090 PE=4 SV=1
Length = 337
Score = 124 bits (309), Expect = 2e-027
Identities = 63/111 (56%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P VKI + + +KFEL +T+ S AN+LRRVM+AE+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL ++ + +SRDCD D CE+CSV +L A+C D + V
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQV 123
>tr|A3GF98|A3GF98_PICST 45 kDa subunit of RNA polymerase II OS=Pichia stipitis
GN=RPB3 PE=4 SV=1
Length = 315
Score = 123 bits (308), Expect = 3e-027
Identities = 59/111 (53%), Positives = 81/111 (72%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P V IRE D++ F LRD D ++AN++RRVM+AEVPT+AIDLVEI++N+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGL+PL S+ ++ +SRDC D C CSV L A+C +D T++V
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNV 116
>tr|Q2GNN7|Q2GNN7_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
GN=CHGG_10417 PE=4 SV=1
Length = 338
Score = 122 bits (305), Expect = 7e-027
Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P VKI + +KFEL + D + AN+LRRVM+ E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL +D + F+RDCD DG CE+CSV L A+C D+ + V
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHV 123
>tr|A8PAX3|A8PAX3_BRUMA DNA-directed RNA polymerase II 33 kDa polypeptide,
putative OS=Brugia malayi GN=Bm1_20845 PE=4 SV=1
Length = 275
Score = 121 bits (302), Expect = 2e-026
Identities = 62/111 (55%), Positives = 79/111 (71%), Gaps = 4/111 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P V I + + ++F L DTD SVAN+LRR+ +AEVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 166 FIAHRLGLIPLTSDRAM-SMRFSRDCDACDGDGQCEYCSVEFHLRARCHSD 17
FIAHRLGLIPLTSD + M+FSRDC + C++C+VE LR RC +
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDE 110
>tr|A5DQ44|A5DQ44_PICGU Putative uncharacterized protein OS=Pichia
guilliermondii GN=PGUG_05395 PE=4 SV=2
Length = 305
Score = 120 bits (299), Expect = 3e-026
Identities = 58/110 (52%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
RV IR+ D++ F L+D D S+AN++RR M+AEVPT+AIDLVEI++N+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 151 LGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
LG+IPL S+ ++ +SRDC D C CSV+ L A+C SD T+ V
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSV 115
>tr|Q6BUW0|Q6BUW0_DEBHA DEHA2C07546p OS=Debaryomyces hansenii GN=DEHA2C07546g
PE=4 SV=1
Length = 311
Score = 119 bits (298), Expect = 5e-026
Identities = 59/111 (53%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
PRV IR +++ F L+D D ++AN++RR M+AEVPT+AIDLVEIE+N+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S+ ++ +SRDC D C CSV+ L A+C +D T+ V
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSV 118
>tr|Q93338|Q93338_CAEEL Protein C36B1.3, partially confirmed by transcript
evidence OS=Caenorhabditis elegans GN=rpb-3 PE=4 SV=2
Length = 282
Score = 118 bits (294), Expect = 1e-025
Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P +++ E+ +D +KF L DTD SVAN+LRRV +AEVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 166 FIAHRLGLIPLTSD-RAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHR+GLIP SD M+++RDC+ + C+ CS+ F L+ +C + TL V
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAV 115
>tr|A5E4Q9|A5E4Q9_LODEL DNA-directed RNA polymerase II 45 kDa polypeptide
OS=Lodderomyces elongisporus GN=LELG_04598 PE=4 SV=1
Length = 336
Score = 117 bits (293), Expect = 2e-025
Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P V +R+ D + F L+ D S+AN+LRR M+AEVPT+AIDLVEI++N+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S ++ +SRDC AC D C CSV L A+C SD T++V
Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNV 114
>tr|A7EJ53|A7EJ53_SCLS1 Putative uncharacterized protein OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_05346 PE=4 SV=1
Length = 335
Score = 117 bits (293), Expect = 2e-025
Identities = 60/111 (54%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P+VKI E ++ FEL + D S AN+LRR +++EVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S + ++RDCD DG CE CSV L ARC D+ + V
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKV 122
>tr|B2B158|B2B158_PODAN Predicted CDS Pa_3_9390 OS=Podospora anserina PE=4 SV=1
Length = 334
Score = 116 bits (290), Expect = 4e-025
Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P VKI + +KFEL++ D S AN+LRRVM+AE+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL ++ + +SRDCD + CE CSV+ L A+C + + V
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSV 123
>tr|A6S2E5|A6S2E5_BOTFB RNA polymerase II subunit 3 OS=Botryotinia fuckeliana
(strain B05.10) GN=BC1G_07087 PE=4 SV=1
Length = 336
Score = 116 bits (289), Expect = 5e-025
Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P+VKI E ++ FEL + D S AN+LRR +++EVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S + ++RDCD +G CE CSV L ARC D+ + V
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKV 122
>tr|B6LMF3|B6LMF3_BRAFL Putative uncharacterized protein OS=Branchiostoma
floridae GN=BRAFLDRAFT_271087 PE=4 SV=1
Length = 275
Score = 116 bits (289), Expect = 5e-025
Identities = 60/116 (51%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P+V + E+ + +KF + DTD S+ANA+RR+ IAEVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 166 FIAHRLGLIPLTSDRAMS-MRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHR+GLIPLTSD + M++SRDC + C C++E L +C DQT V
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHV 115
>tr|B9WGL5|B9WGL5_CANDC DNA-directed RNA polymerase II subunit, putative
OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL
Y-17841) GN=CD36_45240 PE=4 SV=1
Length = 313
Score = 116 bits (288), Expect = 7e-025
Identities = 57/111 (51%), Positives = 79/111 (71%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P V IRE D++ F L++ D +VAN++RR +IAEVPT+AIDLVEI++N+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S+ ++ +SRDC D C CSV L A C ++ T++V
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNV 116
>tr|Q5A462|Q5A462_CANAL Putative uncharacterized protein RPB3 OS=Candida
albicans GN=RPB3 PE=4 SV=1
Length = 318
Score = 116 bits (288), Expect = 7e-025
Identities = 57/111 (51%), Positives = 79/111 (71%), Gaps = 3/111 (2%)
Frame = -3
Query: 334 PRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAH 155
P V IRE D++ F L++ D +VAN++RR +IAEVPT+AIDLVEI++N+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 154 RLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
RLGLIPL S+ ++ +SRDC D C CSV L A C ++ T++V
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNV 116
>tr|B4GX16|B4GX16_DROPE GL21238 OS=Drosophila persimilis GN=GL21238 PE=4 SV=1
Length = 275
Score = 116 bits (288), Expect = 7e-025
Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 4/116 (3%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P V+I E+ D +KF L DT+ SVAN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 166 FIAHRLGLIPLTSDRAMS-MRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
F+AHR+GLIPL SD + ++++RDC D C CSVEF L +C +QT V
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHV 115
>tr|A8XFM5|A8XFM5_CAEBR CBR-RPB-3 protein OS=Caenorhabditis briggsae
GN=Cbr-rpb-3 PE=4 SV=2
Length = 280
Score = 112 bits (278), Expect = 9e-024
Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 5/116 (4%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y P +++ E+ +D +KF L DTD SVAN+LRRV +AEVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 166 FIAHRLGLIPLTSD-RAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHR+GLIP SD M+++R C+ C+ CS+ F L+ +C + TL V
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAV 114
Database: UniProt/TrEMBL
Posted date: Sun May 10 14:41:50 2009
Number of letters in database: 2,506,224,640
Number of sequences in database: 7,695,149
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,769,929,500
Number of Sequences: 7695149
Number of Extensions: 359769929500
Number of Successful Extensions: 291006275
Number of sequences better than 0.0: 0
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