EST translation and GO annotation for unigene RU12062


ESTScan predicted protein sequence

XLLEVFDDVTKAADAAKSCDGGAEESLCLEALDRLNNFPVSYQLLVSTQVGKRLKNLTKHPRKKIQTFALSLMESWKQIVIEETSKNDVK
NGRYERKDSLKRESNPNSPRPVKIQKTAAVKVEKVPKAEQGDIKKVDHDVKPSSEKAYSSESGTTDSKVENHNVVKTEKAPSADNVKVEK
VARELKKPVSGPPKLTSX

ESTScan predicted coding region in original sequence      Start : 1 End : 591 Strand : minus


XXTCTGTTGGAGGTGTTTGACGACGTGACGAAGGCGGCCGACGCCGCGAAATCGTGCGACGGTGGCGCCGAGGAAAGTCTCTGTCTTGAG
GCCTTGGACCGCCTTAATAATTTTCCCGTCTCTTATCAGCTTCTCGTCTCAACCCAAGTTGGGAAGCGTCTTAAGAATCTCACAAAACAT
CCTAGAAAGAAAATCCAGACTTTTGCGCTTAGCCTGATGGAATCATGGAAGCAAATTGTCATTGAGGAAACATCAAAAAATGATGTGAAG
AATGGCAGGTATGAAAGAAAAGATTCGCTAAAGCGTGAGTCAAATCCCAATAGTCCCAGGCCTGTGAAGATTCAGAAAACTGCTGCTGTG
AAGGTTGAGAAGGTCCCCAAGGCTGAACAGGGTGACATTAAGAAGGTTGATCATGATGTTAAACCAAGCTCAGAGAAAGCATATAGTTCT
GAAAGTGGGACAACGGATAGTAAGGTTGAAAATCATAATGTTGTCAAGACTGAGAAAGCTCCCTCAGCGGATAATGTCAAGGTTGAAAAA
GTAGCCAGAGAACTGAAGAAACCTGTGTCTGGTCCCCCAAAGTTGACATCTATX


X -- added by ESTScan; agctn -- deleted by ESTScan; AGCTN -- CDS



InterProtein domain annotations

Pfam domain annotations

PF08711    Transcription elongation factor S-II protein N terminal

        GO:0003677     GO:0003677

        GO:0005515     GO:0005515

        GO:0005634     GO:0005634

        GO:0006350     GO:0006350

        GO:0030528     GO:0030528

GO terms for RU12062 (based on the top Swiss-Prot and TrEMBL hits)


GO Biological Process
   GO:0006350-transcription
  GO:0006354-RNA elongation
  GO:0006355-regulation of transcription, DNA-dependent
  GO:0006357-regulation of transcription from RNA polymerase II promoter
  GO:0045449-regulation of transcription
GO Molecular Function
   GO:0003676-nucleic acid binding
  GO:0003702-RNA polymerase II transcription factor activity
  GO:0003711-transcription elongation regulator activity
  GO:0003746-translation elongation factor activity
  GO:0005515-protein binding
  GO:0008270-zinc ion binding
  GO:0030528-transcription regulator activity
GO Cellular Component
   GO:0005634-nucleus