SNPs of unigene RU00008
               1      -     51
RU00008        --> GGGGCGGCACATTCTGTTAAAAAGATAACCGCAGGTGTCCTAAGATGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- GGGGCGGCACATTCTGTTAAAAAGATAACCGCAGGTGTCCTAAGATGAGC
CT0055169      <-- ...............................CAGGTGTCCTAAGATGAGC
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               51     -    101
RU00008        --> TCAACGAGAACAGATGTGCCGCCCCAGCCAAACTACCCACCTGACAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- TCAACGAGAACAGAaactctcgtgtcg.......................  Ethylene
CT0055169      <-- TCAACGAGAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT  Control
CT0133401      <-- ..tcttttAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT  Control
ET0055661      <-- ..................cgcaccctctcagACTACCCACCTGACAATGT  Ethylene
ET0055735      <-- .......................................CCTGACAATGT  Ethylene
ET0056252      <-- .......................................CCTGACAATGT  Ethylene
CT0093717      <-- ..................................................  Control
ET0054454      <-- ..................................................  Ethylene
ET0076488      <-- ..................................................  Ethylene
CT0092232      <-- ..................................................  Control
CT0095438      <-- ..................................................  Control
ET0075788      <-- ..................................................  Ethylene
ET0096583      <-- ..................................................  Ethylene
ET0107900      <-- ..................................................  Ethylene
CT0001283      <-- ..................................................  Control
ET0017649      <-- ..................................................  Ethylene
ET0088404      <-- ..................................................  Ethylene
ET0032606      <-- ..................................................  Ethylene
ET0055214      <-- ..................................................  Ethylene
ET0068235      <-- ..................................................  Ethylene
ET0076213      <-- ..................................................  Ethylene
ET0078369      <-- ..................................................  Ethylene
ET0135314      <-- ..................................................  Ethylene
ET0087951      <-- ..................................................  Ethylene
ET0005403      <-- ..................................................  Ethylene
CT0123609      <-- ..................................................  Control
CT0133086      <-- ..................................................  Control
CT0002106      <-- ..................................................  Control
CT0007320      <-- ..................................................  Control
CT0094821      <-- ..................................................  Control
ET0081761      <-- ..................................................  Ethylene
CT0073317      <-- ..................................................  Control
CT0129209      <-- ..................................................  Control
ET0030044      <-- ..................................................  Ethylene
CT0053198      <-- ..................................................  Control
CT0104035      <-- ..................................................  Control
CT0089717      <-- ..................................................  Control
ET0000912      <-- ..................................................  Ethylene
ET0047672      <-- ..................................................  Ethylene
CT0075484      <-- ..................................................  Control
ET0147371      <-- ..................................................  Ethylene
ET0033453      <-- ..................................................  Ethylene
CT0106913      <-- ..................................................  Control
CT0113060      <-- ..................................................  Control
ET0132445      <-- ..................................................  Ethylene
ET0080568      <-- ..................................................  Ethylene
ET0060573      <-- ..................................................  Ethylene
ET0110512      <-- ..................................................  Ethylene
CT0001699      <-- ..................................................  Control
ET0022752      --> ................gccgcaccctctcagACTACCCACCTGACAATGT  Ethylene
ET0031500      --> ................gccgcaccctctcagACTACCCACCTGACAATGT  Ethylene
ET0047508      --> ................gccgcaccctctcagACTACCCACCTGACAATGT  Ethylene
ET0013101      --> ...................................CCCACCTGACAATGT  Ethylene
ET0027978      --> .............................................AATGT  Ethylene
ET0033266      --> .............................................AATGT  Ethylene
ET0035187      --> .............................................AATGT  Ethylene
ET0147130      --> ..................................................  Ethylene
ET0129604      --> ..................................................  Ethylene
ET0088681      --> ..................................................  Ethylene
CT0052461      --> ..................................................  Control
ET0024380      --> ..................................................  Ethylene
CT0103274      --> ..................................................  Control
CT0101729      --> ..................................................  Control
CT0106312      --> ..................................................  Control
CT0034044      --> ..................................................  Control
ET0146889      --> ..................................................  Ethylene
CT0099794      --> ..................................................  Control
ET0065706      --> ..................................................  Ethylene
ET0066040      --> ..................................................  Ethylene
ET0066544      --> ..................................................  Ethylene
ET0066564      --> ..................................................  Ethylene
CT0129997      --> ..................................................  Control
CT0094495      --> ..................................................  Control
ET0116568      --> ..................................................  Ethylene
CT0017545      --> ..................................................  Control
CT0027395      --> ..................................................  Control
CT0005117      --> ..................................................  Control
CT0076509      --> ..................................................  Control
ET0104060      --> ..................................................  Ethylene
CT0131050      --> ..................................................  Control
CT0055070      --> ..................................................  Control
CT0055520      --> ..................................................  Control
ET0023747      --> ..................................................  Ethylene
ET0062464      --> ..................................................  Ethylene
CT0012129      --> ..................................................  Control
CT0098024      --> ..................................................  Control
ET0116546      --> ..................................................  Ethylene

               101    -    151
RU00008        --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
CT0133401      <-- CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0055661      <-- CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0055735      <-- CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0056252      <-- CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0031500      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0047508      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0013101      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0027978      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0033266      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0035187      --> CTTCCGCCCGGATCAGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGG
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               151    -    201
RU00008        --> GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
CT0133401      <-- GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0055661      <-- GCAGTGCCCCGCCTCCGTTTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0055735      <-- GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0056252      <-- GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
CT0093717      <-- ..............CCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0054454      <-- ................GATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0031500      --> GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0047508      --> GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0013101      --> GCAGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0027978      --> GCAG--CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0033266      --> GCAG--CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0035187      --> GCAG--CCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTA
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               201    -    251
RU00008        --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCC....................
CT0133401      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0055661      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATAC...........
ET0055735      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0056252      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
CT0093717      <-- GTGGTATTTCACTTTCGCCCCGAAGGCTCCCACTTATACTACACCTCTCA
ET0054454      <-- GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0031500      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0047508      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0013101      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0027978      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0033266      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0035187      --> GTGGTATTTCACTTTCGCCC-GAAGGCTCCCACTTATACTACACCTCTCA
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               251    -    301
RU00008        --> AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0055661      <-- ..................................................
ET0055735      <-- AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0056252      <-- AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
CT0093717      <-- AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT-CTTTC
ET0054454      <-- AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0076488      <-- ...............aCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> AGTCATTTCACAAAGTCG................................
ET0031500      --> AGTCATTTCACAAAGTCG................................
ET0047508      --> AGTCATTTCACAAAGTCG................................
ET0013101      --> AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0027978      --> AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0033266      --> AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0035187      --> AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               301    -    351
RU00008        --> CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0055661      <-- ..................................................
ET0055735      <-- CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0056252      <-- CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
CT0093717      <-- CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0054454      <-- CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0076488      <-- CCCGCTGATTCTGCCAAGCCCGTTCCCCTTGGCTGTGGTTTCGCTGGATA
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0027978      --> CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0033266      --> CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0035187      --> CCCGCTGATTCTGCCAAGCCCGTTCCC-TTGGCTGTGGTTTCGCTGGATA
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               351    -    401
RU00008        --> GTAGACAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- GTAGACAGGGACAGTGGGAAATCTCGTTAAataccaattacaatagacga
ET0055661      <-- ..................................................
ET0055735      <-- GTAGACAGGGACA.....................................
ET0056252      <-- GTAGACAGGGACA.....................................
CT0093717      <-- GTAGACAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTA
ET0054454      <-- GTAGACAGGGACAGTGGG................................
ET0076488      <-- GTAGACAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTA
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> GTAGACAGGGA.......................................
ET0027978      --> GTAGACAGGGACAGT...................................
ET0033266      --> GTAGACAGGGACAGT...................................
ET0035187      --> GTAGACAGGGACAGT...................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               401    -    451
RU00008        --> ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- cgtac.............................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ATTAGATGACGAG.....................................
ET0054454      <-- ..................................................
ET0076488      <-- ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               451    -    501
RU00008        --> CCGTTTACCCGCGCTTGGTTGAAATTTACTTACAACTTTAGAACAATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- CCGTTTACCCGCGCTTGGTTGAAATTTACTTACAACTTTAGAACAATTAC
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               501    -    551
RU00008        --> AAGAAAGAACAAACTAAGGGAACAAAGAAAAA-TAACAAACAATTAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- AAGAAAGAACAAACTAAGGGAACAAAGAAAAAATAACAAA..........
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..GAAAGAACAAACTAAGGGAACAAAGAAAAA-TAACAAACAATTAGACG
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               551    -    601
RU00008        --> TTAAACAATACCGACAAGGGAACCAATACGACAAATAGACTTTAGTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> TTAAACAATACCGACAAGGGAACCAATACGACAAATAGACTTTAGTTTTA
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               601    -    651
RU00008        --> AAATTAAAACAAGTACGGAATTACCCCCTTA-GTA-CCGTAA-CCAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ...........................................taccagt
ET0096583      <-- ...........................................taccagt
ET0107900      <-- ...........................................taccagt
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> AAATTAAAACAAGTACGGAATTACCCCCTTA-GTA-CCGTAA-CCAAGTT
ET0129604      --> .................aAATTAACCCCTTAAGTAACCGTAAACCAAGTT
ET0088681      --> ...........tagttcggtatttCCCCTTT-GTT-CCGTTA-CCTAGTT
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               651    -    701
RU00008        --> AC-T-G-A-GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- .C-T-G-A-GT-CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
CT0095438      <-- tC-T-G-A-GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0075788      <-- tC-T-G-A-GT-CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0096583      <-- tC-T-G-A-GT-CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0107900      <-- tC-T-G-A-GT-CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
CT0001283      <-- ...T-G-A-GT-CGA-CTGT-G-ACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0017649      <-- ...T-G-A-GT-CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0088404      <-- .......A-GT-CGA-CTGT-G-ACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0032606      <-- ............CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0055214      <-- ............CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0068235      <-- ............CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0076213      <-- ............CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0078369      <-- ............CGA-CTGTTGAACGCCCCGGGGAAAGCCCCCGAAGGAG
ET0135314      <-- ............CGA-CTGT-GAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0087951      <-- ..................GTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0005403      <-- ......................AACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0123609      <-- ........................CGCCC-GGGGAAAGCCCCCGAAGGAG
CT0133086      <-- ........................CGCCC-GGGGAAAGCCCC-GAAGGAG
CT0002106      <-- ..........................CCC-GGGGAAAGCCCCCGAAGGAG
CT0007320      <-- ..........................CCC-GGGGAAAGCCCCCGAAGGAG
CT0094821      <-- ..........................CCC-GGGGAAAGCCCC-GAAGGAG
ET0081761      <-- ..........................CCC-GGGGAAAGCCCCCGAAGGAG
CT0073317      <-- ...............................GGGAAAGCCCC-GAAGGAG
CT0129209      <-- ....................................aagCCCCGAAGGAG
ET0030044      <-- ....................................aagCCCCGAAGGAG
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> AC-T-G-A-GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0129604      --> AC-TAG-AAGTACGAACTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0088681      --> TCTT-GTA-GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0052461      --> .......A-GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
ET0024380      --> .........GT-CGA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0103274      --> .............GA-CTGTTGAACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0101729      --> ......................tACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0106312      --> .......................ACGCCC-GGGGAAAGCCCCCGAAGGAG
CT0034044      --> .........................GCCC-GGGGAAAGCCCC-GAAGGAG
ET0146889      --> ..........................CCC-GGGGAAAGCCCCCGAAGGAG
CT0099794      --> ...........................CC-GGGGAAAGCCCCCGAAGGAG
ET0065706      --> ...........................CC-GGGGAAAGCCCCCGAAGGAG
ET0066040      --> ...........................CC-GGGGAAAGCCCCCGAAGGAG
ET0066544      --> ...........................CC-GGGGAAAGCCCCCGAAGGAG
ET0066564      --> ...........................CC-GGGGAAAGCCCCCGAAGGAG
CT0129997      --> ..............................GGGGAAAGCCCCCGAAGGAG
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               701    -    751
RU00008        --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- CGTTCCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0095438      <-- CGTTCCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0075788      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0096583      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0107900      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0001283      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0017649      <-- CGTTCCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0088404      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0032606      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0055214      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0068235      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0076213      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0078369      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0135314      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0087951      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0005403      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0123609      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0133086      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0002106      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0007320      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0094821      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0081761      <-- CGTTCCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0073317      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0129209      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0030044      <-- CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0053198      <-- ...............CCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0104035      <-- ....................cGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0129604      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0088681      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0052461      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0024380      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0103274      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0101729      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0106312      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0034044      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0146889      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0099794      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0065706      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0066040      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0066544      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0066564      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0129997      --> CGTTCCC-AGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0094495      --> .........GTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
ET0116568      --> .............GTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGC
CT0017545      --> ..................................GACCCGCTCTCGCCGC
CT0027395      --> ..................................GACCCGCTCTCGCCGC
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               751    -    801
RU00008        --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0095438      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0075788      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0096583      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0107900      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0001283      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0017649      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0088404      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0032606      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0055214      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0068235      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0076213      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0078369      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0135314      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0087951      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0005403      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0123609      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0133086      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0002106      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0007320      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0094821      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0081761      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0073317      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0129209      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0030044      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0053198      <-- GGAAGCAGTCTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0104035      <-- GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0089717      <-- ..AAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0000912      <-- ................AGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0047672      <-- .............................CCGACGGGTTCGGGACTGGGA
CT0075484      <-- ..................................................
ET0147371      <-- ..................................................
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0129604      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0088681      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0052461      --> GGAAGCAG-CTCGAGCAGTTCACCGAGAGCCGACGGGTTCGGGACTGGGA
ET0024380      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0103274      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0101729      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0106312      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0034044      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0146889      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0099794      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0065706      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0066040      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0066544      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0066564      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0129997      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0094495      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0116568      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0017545      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0027395      --> GGAAGCAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0005117      --> .....CAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0076509      --> .....CAG-CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
ET0104060      --> .........CTCGAGCAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0131050      --> ...............CAGTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0055070      --> .................GTTCACCGACAGCCGACGGGTTCGGGACTGGGA
CT0055520      --> .........................................GGACTGGGA
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               801    -    851
RU00008        --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0095438      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0075788      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0096583      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0107900      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0001283      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTAC...
ET0017649      <-- CCCCCG-TGCCC-AG-CCCTCAGAG.........................
ET0088404      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0032606      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0055214      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0068235      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0076213      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0078369      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0135314      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0087951      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0005403      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0123609      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0133086      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0002106      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0007320      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0094821      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0081761      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCC...........
CT0073317      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0129209      <-- CCCCCG-TGCCC-AG-CCCT..............................
ET0030044      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0053198      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0104035      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0089717      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0000912      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0047672      <-- CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0075484      <-- ..............G-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0147371      <-- ..................CTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0033453      <-- ...................TCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ..................................................
ET0080568      <-- ..................................................
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0129604      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0088681      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0052461      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTA....
ET0024380      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0103274      --> CCCCCG-T..........................................
CT0101729      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTT.....
CT0106312      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTT.....
CT0034044      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0146889      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0099794      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0065706      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGG.......
ET0066040      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGG.......
ET0066544      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGG.......
ET0066564      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGG.......
CT0129997      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCgtaacc............
CT0094495      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTA....
ET0116568      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0017545      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0027395      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0005117      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0076509      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0104060      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0131050      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0055070      --> CCCCCG-TGCCC-AG-CCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
CT0055520      --> CCCCCGGTGCCCGAGACCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGA
ET0023747      --> .....................................CCGAGGTTACGGA
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               851    -    901
RU00008        --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0095438      <-- TCCATTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0075788      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0096583      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0107900      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0032606      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0055214      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0068235      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0076213      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0078369      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0135314      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0087951      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0005403      <-- T.................................................
CT0123609      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0133086      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0002106      <-- TCCATTTT-GCCGACTTCCCTTGCCTAC......................
CT0007320      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTT................
CT0094821      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0081761      <-- ..................................................
CT0073317      <-- TCCATTTTTGCCGACTT.................................
CT0129209      <-- ..................................................
ET0030044      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0053198      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0104035      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0089717      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0000912      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0047672      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0075484      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0147371      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0033453      <-- TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0106913      <-- ....TTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0113060      <-- ...........ccgaTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0132445      <-- ....................................ATTGACCAGAGGCT
ET0080568      <-- .................................................T
ET0060573      <-- ..................................................
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0129604      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0088681      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0052461      --> ..................................................
ET0024380      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTT................
ET0146889      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0099794      --> T.................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0017545      --> TCCATTTT-GCCGACTT.................................
CT0027395      --> TCCATTTT-GCCGACTT.................................
CT0005117      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0076509      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0104060      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCAATTGACCAGAGGCT
CT0131050      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0055070      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
CT0055520      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0023747      --> TCCATTTT-GCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCT
ET0062464      --> .........................TACATTGTTCCATTGACCAGAGGCT
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               901    -    951
RU00008        --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- G.................................................
CT0095438      <-- G.................................................
ET0075788      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATG...................
ET0096583      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATG...................
ET0107900      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATG...................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAG.................
ET0032606      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGG.......
ET0055214      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACC.........
ET0068235      <-- GTTCACCTTGGAGACCTG-ATGCGGTTTATGAGTACCGACCGGcgtg...
ET0076213      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTG..
ET0078369      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTG..
ET0135314      <-- GTTCACCTTGGAGACCTG-ATGCGGTTtattgtagttacgtaccgg....
ET0087951      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATG-GTAC-G-CCGGGCGTGAA
ET0005403      <-- ..................................................
CT0123609      <-- GTTCACCTTGGAGACCTGGATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0133086      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACC.........
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0053198      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0104035      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0089717      <-- GTTCACC...........................................
ET0000912      <-- GTTCACCTTGGAGACCTG-ATGCGGTT.......................
ET0047672      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACC.........
CT0075484      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0147371      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0033453      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0106913      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0113060      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0132445      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0080568      <-- GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0060573      <-- .TTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0110512      <-- .TTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0001699      <-- .............................................GTGAA
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> GTTCACCT..........................................
ET0129604      --> GTTCACCTTGGAGACCTG................................
ET0088681      --> GTTCA.............................................
CT0052461      --> ..................................................
ET0024380      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAG.................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTG..
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> GTT...............................................
CT0076509      --> GTT...............................................
ET0104060      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACC.........
CT0131050      --> GTTCACCTT.........................................
CT0055070      --> GTTCACCTTGGAGACCTG................................
CT0055520      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACC.........
ET0023747      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0062464      --> GTTCACCTTGGAGACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0012129      --> .............ACCTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
CT0098024      --> ...............CTG-ATGCGGTT-ATGAGTAC-GACCGGGCGTGAA
ET0116546      --> .................................TAC-GACCGGGCGTGAA

               951    -   1001
RU00008        --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- TGGC..............................................
ET0005403      <-- ..................................................
CT0123609      <-- TGGCACTCGG........................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- TGGCACTCGGTtcc....................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- TGGCACTCG.........................................
CT0053198      <-- TGGCACTCGGTCCTCCGGATTTTTCAAGGG....................
CT0104035      <-- TGGCAC............................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- TGGCACTCGGTCCTCCGGATTTTTCAAGGGCCGCCGGGGGCGCACCGG-A
ET0147371      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0033453      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
CT0106913      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
CT0113060      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0132445      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0080568      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0060573      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0110512      <-- TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
CT0001699      <-- TGGCACTCGGTCCTCCG-ATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGGGA
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCG...
ET0062464      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
CT0012129      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGG-CGCACCGG-A
CT0098024      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A
ET0116546      --> TGGCACTCGGTCCTCCGGATTTT-CAAGGGCCGCCGGGGGCGCACCGG-A

               1001   -   1051
RU00008        --> CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- CAC...............................................
ET0147371      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0033453      <-- CACC..............................................
CT0106913      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
CT0113060      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0132445      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0080568      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0060573      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0110512      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
CT0001699      <-- CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTG................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
CT0012129      --> CACCACGCAACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
CT0098024      --> CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT
ET0116546      --> CACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCT

               1051   -   1101
RU00008        --> GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0033453      <-- ..................................................
CT0106913      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAA-GATAACTCTTC
CT0113060      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0132445      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0080568      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0060573      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0110512      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
CT0001699      <-- GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> GAGCCGTTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC
CT0012129      --> GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAG...............
CT0098024      --> GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGA.........
ET0116546      --> GAGCCGTTT-CCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTC

               1101   -   1151
RU00008        --> CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAA-CC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAA-CC-
ET0033453      <-- ..................................................
CT0106913      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACG..............
CT0113060      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCG........
ET0132445      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAAACCA
ET0080568      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAA-CC-
ET0060573      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAA-CC-
ET0110512      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCG........
CT0001699      <-- CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACG..............
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTT............
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> CCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTT............

               1151   -   1201
RU00008        --> ACC-ACGTTCCCGGTTT-C-TAGG-TAATTTTTAACCCCGT-ATTTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0067336      <-- ..................................................
CT0055169      <-- ..................................................
CT0133401      <-- ..................................................
ET0055661      <-- ..................................................
ET0055735      <-- ..................................................
ET0056252      <-- ..................................................
CT0093717      <-- ..................................................
ET0054454      <-- ..................................................
ET0076488      <-- ..................................................
CT0092232      <-- ..................................................
CT0095438      <-- ..................................................
ET0075788      <-- ..................................................
ET0096583      <-- ..................................................
ET0107900      <-- ..................................................
CT0001283      <-- ..................................................
ET0017649      <-- ..................................................
ET0088404      <-- ..................................................
ET0032606      <-- ..................................................
ET0055214      <-- ..................................................
ET0068235      <-- ..................................................
ET0076213      <-- ..................................................
ET0078369      <-- ..................................................
ET0135314      <-- ..................................................
ET0087951      <-- ..................................................
ET0005403      <-- ..................................................
CT0123609      <-- ..................................................
CT0133086      <-- ..................................................
CT0002106      <-- ..................................................
CT0007320      <-- ..................................................
CT0094821      <-- ..................................................
ET0081761      <-- ..................................................
CT0073317      <-- ..................................................
CT0129209      <-- ..................................................
ET0030044      <-- ..................................................
CT0053198      <-- ..................................................
CT0104035      <-- ..................................................
CT0089717      <-- ..................................................
ET0000912      <-- ..................................................
ET0047672      <-- ..................................................
CT0075484      <-- ..................................................
ET0147371      <-- ACC-ACGT-CCCGGTT--C-TAGG-TAATTTTTAACCCCGT-ATTT-CCC
ET0033453      <-- ..................................................
CT0106913      <-- ..................................................
CT0113060      <-- ..................................................
ET0132445      <-- ACCAACGTACCCGGTTTacaaggaaatt......................
ET0080568      <-- ACCTACGTTCCCGGTTTTCTTAGGTTAATTTTTTAACCCGTTATTTTCCC
ET0060573      <-- ACC-ACGTTCCCGGTTT-C-TAGG-TAATTTTTAACCC-GT-ATTTTCCC
ET0110512      <-- ..................................................
CT0001699      <-- ..................................................
ET0022752      --> ..................................................
ET0031500      --> ..................................................
ET0047508      --> ..................................................
ET0013101      --> ..................................................
ET0027978      --> ..................................................
ET0033266      --> ..................................................
ET0035187      --> ..................................................
ET0147130      --> ..................................................
ET0129604      --> ..................................................
ET0088681      --> ..................................................
CT0052461      --> ..................................................
ET0024380      --> ..................................................
CT0103274      --> ..................................................
CT0101729      --> ..................................................
CT0106312      --> ..................................................
CT0034044      --> ..................................................
ET0146889      --> ..................................................
CT0099794      --> ..................................................
ET0065706      --> ..................................................
ET0066040      --> ..................................................
ET0066544      --> ..................................................
ET0066564      --> ..................................................
CT0129997      --> ..................................................
CT0094495      --> ..................................................
ET0116568      --> ..................................................
CT0017545      --> ..................................................
CT0027395      --> ..................................................
CT0005117      --> ..................................................
CT0076509      --> ..................................................
ET0104060      --> ..................................................
CT0131050      --> ..................................................
CT0055070      --> ..................................................
CT0055520      --> ..................................................
ET0023747      --> ..................................................
ET0062464      --> ..................................................
CT0012129      --> ..................................................
CT0098024      --> ..................................................
ET0116546      --> ..................................................

               1201   -   1251
RU00008        --> TTTTT
                   ~~~~~
ET0067336      <-- .....
CT0055169      <-- .....
CT0133401      <-- .....
ET0055661      <-- .....
ET0055735      <-- .....
ET0056252      <-- .....
CT0093717      <-- .....
ET0054454      <-- .....
ET0076488      <-- .....
CT0092232      <-- .....
CT0095438      <-- .....
ET0075788      <-- .....
ET0096583      <-- .....
ET0107900      <-- .....
CT0001283      <-- .....
ET0017649      <-- .....
ET0088404      <-- .....
ET0032606      <-- .....
ET0055214      <-- .....
ET0068235      <-- .....
ET0076213      <-- .....
ET0078369      <-- .....
ET0135314      <-- .....
ET0087951      <-- .....
ET0005403      <-- .....
CT0123609      <-- .....
CT0133086      <-- .....
CT0002106      <-- .....
CT0007320      <-- .....
CT0094821      <-- .....
ET0081761      <-- .....
CT0073317      <-- .....
CT0129209      <-- .....
ET0030044      <-- .....
CT0053198      <-- .....
CT0104035      <-- .....
CT0089717      <-- .....
ET0000912      <-- .....
ET0047672      <-- .....
CT0075484      <-- .....
ET0147371      <-- TTTTc
ET0033453      <-- .....
CT0106913      <-- .....
CT0113060      <-- .....
ET0132445      <-- .....
ET0080568      <-- TTTTT
ET0060573      <-- TTTTT
ET0110512      <-- .....
CT0001699      <-- .....
ET0022752      --> .....
ET0031500      --> .....
ET0047508      --> .....
ET0013101      --> .....
ET0027978      --> .....
ET0033266      --> .....
ET0035187      --> .....
ET0147130      --> .....
ET0129604      --> .....
ET0088681      --> .....
CT0052461      --> .....
ET0024380      --> .....
CT0103274      --> .....
CT0101729      --> .....
CT0106312      --> .....
CT0034044      --> .....
ET0146889      --> .....
CT0099794      --> .....
ET0065706      --> .....
ET0066040      --> .....
ET0066544      --> .....
ET0066564      --> .....
CT0129997      --> .....
CT0094495      --> .....
ET0116568      --> .....
CT0017545      --> .....
CT0027395      --> .....
CT0005117      --> .....
CT0076509      --> .....
ET0104060      --> .....
CT0131050      --> .....
CT0055070      --> .....
CT0055520      --> .....
ET0023747      --> .....
ET0062464      --> .....
CT0012129      --> .....
CT0098024      --> .....
ET0116546      --> .....