Rose Transcriptome Database

SNPs of unigene RU01295
               1      -     51
RU01295        --> AAAAAACTAAAAGTTTGTAAGTTCAACTTTTCTGGTGAGATACAATGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> AAAAAACTAAAAGTTTGTAAGTTCAACTTTTCTGGTGAGATACAATGGGG
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               51     -    101
RU01295        --> CTTTATACTCTACATAAGCAAAATTAAATTCAAAATTTGCTGCCTCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> CTTTATACTCTACATAAGCAAAATTAAATTCAAAATTTGCTGCCTCAAAC
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               101    -    151
RU01295        --> AACCCCTTTTATTTCAAAGCTTTGCCAA-CTTTGAATTAATGAACACTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..........tttctAAAGCTTTGCCAAACTTTGAATTAATGAACACTGC
CT0065418      <-- ......................................ttaGAACACTGC
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> AACCCCTTTTATTTCAAAGCTTTGCCAA-CTTTGAATTAATGAACACTGC
ET0105693      --> ..............CAAAGCTTTGCCAA-CTTTGAATTAATGAACACTGC
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               151    -    201
RU01295        --> AAAATGAATTCCTCTGTGACAGTCATCTGAATCCCATGGGATACCATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- AAAATGAATTCCTCTGTGACAGTCATCTGAATCCCATGGGATACCATTCA
CT0065418      <-- AAAATGAATTCCTCTGTGACAGTCATCTGAATCCCATGGGATACCATTCA
ET0076152      <-- ...................................cTGGGATACCATTCA
ET0102273      <-- ........................................ATACCATTCA
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> AAAATGAATTCCTCTGTGACAGTCATCTGAATCCCATGGGATACCATTCA
ET0105693      --> AAAATGAATTCCTCTGTGACAGTCATCTGAATCCCATGGGATACCATTCA
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               201    -    251
RU01295        --> AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATT--A-TTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATTTAA-TTTCA  Control
CT0065418      <-- AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATTTAA-TTTCA  Control
ET0076152      <-- AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATT--AATTTCA  Ethylene
ET0102273      <-- AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATT--AATTTCA  Ethylene
CT0019831      <-- ..................................................  Control
CT0037211      <-- ..................................................  Control
CT0014075      <-- ..................................................  Control
ET0111420      <-- ..................................................  Ethylene
CT0047771      <-- ..................................................  Control
ET0017623      <-- ..................................................  Ethylene
CT0035281      <-- ..................................................  Control
ET0016727      <-- ..................................................  Ethylene
ET0080635      <-- ..................................................  Ethylene
CT0000982      <-- ..................................................  Control
ET0136400      <-- ..................................................  Ethylene
CT0049374      <-- ..................................................  Control
ET0126573      <-- ..................................................  Ethylene
CT0091033      <-- ..................................................  Control
CT0083748      <-- ..................................................  Control
CT0098566      <-- ..................................................  Control
ET0122727      <-- ..................................................  Ethylene
CT0062360      <-- ..................................................  Control
CT0076565      <-- ..................................................  Control
ET0039790      <-- ..................................................  Ethylene
CT0023123      <-- ..................................................  Control
CT0077837      <-- ..................................................  Control
CT0004993      <-- ..................................................  Control
ET0106640      --> AGTCCCTTGTCTTGATGAATTACACAAAGGGGAAAAAAATT--A-TTTCA  Ethylene
ET0105693      --> AGTCCCTTGTCTTGATGAATTACACAAGGGGAAAAAAAATT--A-TTTCA  Ethylene
RH16M177       --> ..................................................  WaterDS
CT0103957      --> ..................................................  Control
CT0106037      --> ..................................................  Control
CT0104875      --> ..................................................  Control
CT0115294      --> ..................................................  Control
CT0038447      --> ..................................................  Control
CT0111064      --> ..................................................  Control
CT0090890      --> ..................................................  Control
CT0095087      --> ..................................................  Control
ET0020746      --> ..................................................  Ethylene
ET0008925      --> ..................................................  Ethylene
ET0080177      --> ..................................................  Ethylene
CT0028563      --> ..................................................  Control
CT0051586      --> ..................................................  Control
CT0065702      --> ..................................................  Control
ET0088838      --> ..................................................  Ethylene

               251    -    301
RU01295        --> GTGAAGAT-CAAAAAACCATTGATTTAGAGCAACATTGACTCTGGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- GTGAAGAT-CAAAAAACCGTTGATTTAGAGCAACATTGACTCTGGATTCT  Control
CT0065418      <-- GTGAAGAT-CAAAAAACCGTTGATTTAGAGCAACATTGACTCTGGATTCT  Control
ET0076152      <-- GTGAAGAT-CAAAAAACCATTGATTTAGAGCAACATTGACTCTGGATTCT  Ethylene
ET0102273      <-- GTGAAGAT-CAAAAAACCATTGATTTAGAGCAACATTGACTCTGGATTCT  Ethylene
CT0019831      <-- ....AGAT-CAAAAAACCGTTGATTTAGAGCAACATTGACTCTGGATTCT  Control
CT0037211      <-- ....AGAT-CAAAAAACCGTTGATTTAGAGCAACATTGACTCTGGATTCT  Control
CT0014075      <-- ..................................................  Control
ET0111420      <-- ..................................................  Ethylene
CT0047771      <-- ..................................................  Control
ET0017623      <-- ..................................................  Ethylene
CT0035281      <-- ..................................................  Control
ET0016727      <-- ..................................................  Ethylene
ET0080635      <-- ..................................................  Ethylene
CT0000982      <-- ..................................................  Control
ET0136400      <-- ..................................................  Ethylene
CT0049374      <-- ..................................................  Control
ET0126573      <-- ..................................................  Ethylene
CT0091033      <-- ..................................................  Control
CT0083748      <-- ..................................................  Control
CT0098566      <-- ..................................................  Control
ET0122727      <-- ..................................................  Ethylene
CT0062360      <-- ..................................................  Control
CT0076565      <-- ..................................................  Control
ET0039790      <-- ..................................................  Ethylene
CT0023123      <-- ..................................................  Control
CT0077837      <-- ..................................................  Control
CT0004993      <-- ..................................................  Control
ET0106640      --> GTGAAGATACAAAAAACCATTGATTTA.......................  Ethylene
ET0105693      --> GTGAAGAT-CAAAAAACCATTGATTTAGAGCAACATTGACTCTGGATTCT  Ethylene
RH16M177       --> ..................................................  WaterDS
CT0103957      --> ..................................................  Control
CT0106037      --> ..................................................  Control
CT0104875      --> ..................................................  Control
CT0115294      --> ..................................................  Control
CT0038447      --> ..................................................  Control
CT0111064      --> ..................................................  Control
CT0090890      --> ..................................................  Control
CT0095087      --> ..................................................  Control
ET0020746      --> ..................................................  Ethylene
ET0008925      --> ..................................................  Ethylene
ET0080177      --> ..................................................  Ethylene
CT0028563      --> ..................................................  Control
CT0051586      --> ..................................................  Control
CT0065702      --> ..................................................  Control
ET0088838      --> ..................................................  Ethylene

               301    -    351
RU01295        --> CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCAC.....
CT0065418      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
ET0076152      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
ET0102273      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
CT0019831      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
CT0037211      <-- CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
CT0014075      <-- ..ATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
ET0111420      <-- .................GCTTTTAGCCACTCAGCACCAATTGCACCGTCA
CT0047771      <-- ...........................................ACCGTCA
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> CGATGTAGCCTTTGAATGCTTTTAGCCACTCAGCACCAATTGCACCGTCA
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               351    -    401
RU01295        --> ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ATAACACGATGATCACAGCTTAGTGT........................
ET0076152      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
ET0102273      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
CT0019831      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
CT0037211      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
CT0014075      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
ET0111420      <-- ATAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
CT0047771      <-- -TAACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
ET0017623      <-- ...ACACGATGATCACAGCTTAGTGTTGCAGATAGGAAAGATGCAAACTT
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ATAA..............................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               401    -    451
RU01295        --> GTATTGCTCGGGCCCGGAACTAGGTACAACCCTCTTCTCAGCTGACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- GTATTGCTCGGGCCCGGAACTAGGTtactaacccttct............
ET0102273      <-- GTATTGCTCGGGCCCGGAACTAGGTACAACCCTtct..............
CT0019831      <-- GTATTGCTCTGGCCCGGAACTAGGT.........................
CT0037211      <-- GTATTGCTCTGGCCCGGAACTAGGT.........................
CT0014075      <-- GTATTGCTCGGGCCCGGAACTAGGTACAACCCTCTTCTCAGCTGACCCAA
ET0111420      <-- GTATTGCTCTGGCCCGGAACTAGGTACAACCCTCTTCTCAGCTGACCCAA
CT0047771      <-- GTATTGCTCGGGCCCGGAACTAGGTACAACCCTCTTCTCAGCTGACCCAA
ET0017623      <-- GTATTGCTCGGGCCCGGAACTAGGTACAACCCTCTTCTCAGCTGACCCAA
CT0035281      <-- ......................................CAGCTGACCCAA
ET0016727      <-- ..............................................CCAA
ET0080635      <-- ..............................................CCAA
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> .........................ACAACCCTCTTCTCAGCTGACCCAA
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               451    -    501
RU01295        --> TTGCCAGAATGCCTGA-TTGGGG-A-GGGTTAATGATGGCACAAAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- TTGCCAGAATGCCTGA-TTGGGG-C-GGGTTAATG...............
ET0111420      <-- TTGCCAGAATGCCTGAGTTGGGGGAGGGGTTAATGATGGCACAAAATTGT
CT0047771      <-- TTGCCAGAATGCCTGA-TTGGGG-C-GGGTTAATGATGGCACAAAATTGT
ET0017623      <-- TTGCCAGAATGCCTGA-TTGGGG-C-GGGTTAAT................
CT0035281      <-- TTGCCAGAATGCCTGA-TTGGGG-A-GGGTTAATGATGGCACAAAATTGT
ET0016727      <-- TTGCCAGAATGCCTGA-TTGGGG-A-GGGTTAATGATGGCACAAAATTGT
ET0080635      <-- TTGCCAGAATGCCTGA-TTGGGG-A-GGGTTAATGATGGCACAAAATTGT
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> TTGCCAGAATGCCTGA-TTGGGG-A-GGGTTAATGATGGCACAAAATTGT
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               501    -    551
RU01295        --> TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
CT0047771      <-- TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
ET0017623      <-- ..................................................
CT0035281      <-- TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
ET0016727      <-- TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
ET0080635      <-- TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
CT0000982      <-- .................cCCCAAATTCGACACTGTAAATGTCCCTCCCTC
ET0136400      <-- ...................................AAATGTCCCTCCCTC
CT0049374      <-- .................................................C
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> TTGATGCCAAATGGACCTCCCAAATTCGACACTGTAAATGTCCCTCCCTC
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               551    -    601
RU01295        --> AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- AT-A..............................................
CT0047771      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTT.............
ET0017623      <-- ..................................................
CT0035281      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
ET0016727      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
ET0080635      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0000982      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
ET0136400      <-- ATTAATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0049374      <-- AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0103957      --> AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0106037      --> AT-AATCTTCTGGCTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0104875      --> ......cttggtctTTTAAGCTGTTCTCCTTGGCTTTTTGGGCCAGCAGC
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               601    -    651
RU01295        --> TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
ET0016727      <-- TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTTGCATCCCTGAC
ET0080635      <-- TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTTGCATCCCTGAC
CT0000982      <-- TTAACCTCCTCAGATATAG...............................
ET0136400      <-- TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
CT0049374      <-- TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
ET0126573      <-- ............................................CCTGAC
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTTGCATCCCTGAC
CT0103957      --> TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
CT0106037      --> TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
CT0104875      --> TTAACCTCCTCAGATATAGCGGATAGTCCCTTTTTGTTCGCATCCCTGAC
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               651    -    701
RU01295        --> AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- GACAGGAACATAT.....................................
ET0016727      <-- GACAGGAACATAT.....................................
ET0080635      <-- GACAGGAACATAT.....................................
CT0000982      <-- ..................................................
ET0136400      <-- AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0049374      <-- GACAGGAACATATAGTCCATTGTCTGTCTGTACTGCAACATTAACATTCA
ET0126573      <-- AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> GACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0103957      --> AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0106037      --> AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0104875      --> AACAGGAACATATAGTCCATTGTCTGTCTGCACTGCAACATTAACATTCA
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               701    -    751
RU01295        --> CATTGTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- CATTGTGATACTGGCGGATGCAATCATCTGTCCATGA.............
CT0049374      <-- CATTGTGATACTGGCGGATGCAATCATCT.....................
ET0126573      <-- CAT-GTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> CATTGTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
CT0103957      --> CATTGTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
CT0106037      --> CATTGTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
CT0104875      --> CATTGTGATACTGGCGGATGCAATCATCTGTCCATGAGCTATTGACCTGA
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               751    -    801
RU01295        --> GGAACCTTTTGAAGAGCCAAAGCAGCAGCCTTTATTACAAGATCATTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- GGAACCTTTTGAAGAGCCAAAGCAGCAGCCTTTATTACAAGATCATTGAT
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> GGAACCTTTTGAAGAGCCAAAGCAGCAGCCTTTATTACAAGATCATTGAT
CT0103957      --> GGAACCTTTTGAAGAGCCAAAGCAG.........................
CT0106037      --> GGAACCTTTTGAAGAGCCAAAGCAG.........................
CT0104875      --> GGAACCTTTTGAAGAGCCAAAGCAG.........................
CT0115294      --> ................................TATTACAAGATCATTGAT
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               801    -    851
RU01295        --> AGATATCCGCTTCCCACCTGTAGATTCTTGCAATGAATTGAGCTGGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- AGATATCCGCTTCCCACCTGTAGCTTCTTGCAATGAATTGAGCTGGCCTC
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> AGATATTCGCTTCCCACCTGTAGATTCTTGCAATGAATTGAGTTGGCCTC
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> AGATATCCGCTTCCCACCTGTAGCTTCTTGCAATGAATTGAGCTGGCCTC
CT0038447      --> ................................................TC
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               851    -    901
RU01295        --> TCAACTCAACAAGCTTGTCGACACATGTATCTACTGTCAAATAATAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- TCAAC.............................................
CT0091033      <-- ....................................TCAAATAATAATGA
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> TCAACTCAACAAGCTTGTCGACACATGTATCTACTGTCAAATAATAATGA
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> TCAACTCAACGAGCTTGTCGACACATGTATCTACTGTCAAATAATAATGA
CT0038447      --> TCAACTCAACGAGCTTGTCGACACATGTATCTACTGTCAAATAATAATGA
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               901    -    951
RU01295        --> GGAATAGTTTGCTTTGAGAATAATAATCTTGAAGCTGTAACCTTCCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- GGAATAGTTTGCTTTGAGAATAATAATCTTGAAGCTGTAACCTTCCGTAT
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> GGAATAGTTTGCTTTGAGAATAATAATCTTGAAGCCGTAACCTTCCGTAT
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> GGAATAGTTTGCTTTGAGAATAATAATCTTGAAGCTGTAACCTTCCGTAT
CT0038447      --> GGAATAGTTTGCTTTGAGAATAATAATCTTGAAGCTGTAACCTTCCGTAT
CT0111064      --> .....................................TAACCTTCCGTAT
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               951    -   1001
RU01295        --> CTGAGTATGAGGGATGTCGGTGTAATCCAGTGCTGGGGCTGCAGCACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- CTGAGTATGAGGGATGTCGGTGTAATCCAGTGCTGGGGCTGCAGCACCCT
CT0083748      <-- .....TATGAGGGATGTCGGTGTAATCCAGTGCTGGGGCTGCAGCACCCT
CT0098566      <-- .....TATGAGGGATGTCGGTGTAATCCAGTGCTGGGGCTGCAGCACCCT
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> CTGAGTATGAGGGATGTCGGTGTAATCCAGTGCTGGGGCTGCAGCACCCT
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> CTGAGTATGAGGGATGTCGGTGTAATCCAGTGTTGGGGCTGCAGCACCCT
CT0038447      --> CTGAGTATGAGGGATGTCGGTGTAAT........................
CT0111064      --> CTGAGTATGAGGGATGTCGGTGTAATCCAGTGTTGGGGCTGCAGCACCCT
CT0090890      --> ....................................GGCTGCAGCACCCT
CT0095087      --> ....................................GGCTGCAGCACCCT
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1001   -   1051
RU01295        --> TGGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- TAGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
CT0083748      <-- TAGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
CT0098566      <-- TAGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> TAGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> TGGCCTTGGG........................................
CT0038447      --> ..................................................
CT0111064      --> TGGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
CT0090890      --> TGGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
CT0095087      --> TGGCCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
ET0020746      --> ...CCTTGGGAGCTGGTTCAGAAACTTGCTTCCCACCAGAAGCCAAGTAC
ET0008925      --> .....gtgggaagcaagtttctgaaccagcTCCCACCAGAAGCCAAGTAC
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1051   -   1101
RU01295        --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
CT0083748      <-- TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
CT0098566      <-- TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ctcggccg..........................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
CT0090890      --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
CT0095087      --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
ET0020746      --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
ET0008925      --> TCTTCAATATCAGCCTTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
ET0080177      --> ...............TTCACAATGCTTCCATCCGGGCCTGTTCCTTTGAT
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1101   -   1151
RU01295        --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ACTTGAGAGGGGTACCTTGT..............................
CT0083748      <-- ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTT..........
CT0098566      <-- ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTT..........
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
CT0090890      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
CT0095087      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
ET0020746      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
ET0008925      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
ET0080177      --> ACTTGAGAGGGGTACCTTGTGTTCCTCAGCCAAACTTCTTGCAAGAGGAC
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1151   -   1201
RU01295        --> TAGCAAATACACGATCTCCAGAAGGAGGAGCTGCACTGGGCTTTGAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................  Control
CT0065418      <-- ..................................................  Control
ET0076152      <-- ..................................................  Ethylene
ET0102273      <-- ..................................................  Ethylene
CT0019831      <-- ..................................................  Control
CT0037211      <-- ..................................................  Control
CT0014075      <-- ..................................................  Control
ET0111420      <-- ..................................................  Ethylene
CT0047771      <-- ..................................................  Control
ET0017623      <-- ..................................................  Ethylene
CT0035281      <-- ..................................................  Control
ET0016727      <-- ..................................................  Ethylene
ET0080635      <-- ..................................................  Ethylene
CT0000982      <-- ..................................................  Control
ET0136400      <-- ..................................................  Ethylene
CT0049374      <-- ..................................................  Control
ET0126573      <-- ..................................................  Ethylene
CT0091033      <-- ..................................................  Control
CT0083748      <-- ..................................................  Control
CT0098566      <-- ..................................................  Control
ET0122727      <-- ............................AGCTGCACTGGGCTTTGAAGTC  Ethylene
CT0062360      <-- ..................................................  Control
CT0076565      <-- ..................................................  Control
ET0039790      <-- ..................................................  Ethylene
CT0023123      <-- ..................................................  Control
CT0077837      <-- ..................................................  Control
CT0004993      <-- ..................................................  Control
ET0106640      --> ..................................................  Ethylene
ET0105693      --> ..................................................  Ethylene
RH16M177       --> ..................................................  WaterDS
CT0103957      --> ..................................................  Control
CT0106037      --> ..................................................  Control
CT0104875      --> ..................................................  Control
CT0115294      --> ..................................................  Control
CT0038447      --> ..................................................  Control
CT0111064      --> TAGCAAATACACGATCTCCAGAAGGAGGA.....................  Control
CT0090890      --> TAGCAAATACACGATCTCCAGAAGGAGGAG....................  Control
CT0095087      --> TAGCAAATACACGATCTCCAGAAGGAGGA.....................  Control
ET0020746      --> TAGCAAATACACGATCTCCAGATGGAGGAGCTGCACTGGGCTTTGAAGTC  Ethylene
ET0008925      --> TAGCAAATACACG.....................................  Ethylene
ET0080177      --> TAGCAAATACACGATCTCCAGATGGAGGAGCTGCACTGGGCTTTGAAGTC  Ethylene
CT0028563      --> ..................................................  Control
CT0051586      --> ..................................................  Control
CT0065702      --> ..................................................  Control
ET0088838      --> ..................................................  Ethylene

               1201   -   1251
RU01295        --> TTTGGCTCAGGAGCAGCAACTGGTGCTTCAACTGCCTCTTTTTTGGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- TTTGGCTCGGGAGCAGCAACTGGTGCTTCAACTGCCTCTTTTTTGGGCGG
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> TTTGGCTCAGGAGCAGCAACTGGTGCTTCAACTGCCTttcg.........
ET0008925      --> ..................................................
ET0080177      --> TTTGGCTCAGGAGCAGCAACTGGTGCTTCAACTGCCTCTTTTTTGGGCGG
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1251   -   1301
RU01295        --> GGGAGGCGGGCTAGAGTCAGATGACCCTTTAGCTACATCACCACCAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- GGGAGGCGGGCTAGAGTCAGATGACCCTTTAGCTACATCACCACCAGAAC
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> GGGAGGCGGGCTAGAGTCAGATGCCCCTTTAGCTACATCACCACCAGA..
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1301   -   1351
RU01295        --> CTGATGCTGATGGTGTGTAATCTTTGAATTTTGCAATATCTTCCTCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- CTGATGCTGATGGTGTGTAATCTTTGAATTTTGCAATATCTTCCTCATCT
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ................................GCAATATCTTCCTCATCT
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1351   -   1401
RU01295        --> TCAACAGTTACGCAAATCACCTCGCCAACTTTGATTCCTTGTGCCCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- TCAACAGTTACGCAAATCACCTCGCCAACTTTGATTCCTTGTGCCCCTTC
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> TCAACAGTTATGCAAATCACCTCGCCAACTTTGATTCCTTGTGCCCCTTC
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1401   -   1451
RU01295        --> TCCTTGTACGATCTTGGCAAGATATCCATCCTCCATGCATTCCATCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- TCCTTGTACGATCTTG..................................
CT0062360      <-- .......................................TTCCATCTCAA
CT0076565      <-- ..........................................CATCTCAA
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> TCCTTGTACGATCTTGGCAAGATATCCATCCTCCATGCATTCCATCTCAA
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1451   -   1501
RU01295        --> CTGTAGCTTTATCAGTTTCAACTTCACAGAGCACTTCACCAGGAG-AGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- CTGTAGCTTTATCAGTTTCAACTTCACAGAGCACTTCACCAGGAG-AGAC
CT0076565      <-- CTGTAGCTTTATCAGTTTCAACTTCACAGAGCACTTCACCAGGAG-AGAC
ET0039790      <-- ........TTATCAGTTTCAACTTCACAGAGCACTTCACCAGGAG-AGAC
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> CTGTAGCTTTATCAGTTTCAACTTCACAGAGCA.................
CT0051586      --> .....................................ACCAGGAGGAGAC
CT0065702      --> .....................................ACCAGGAGGAGAC
ET0088838      --> ................................acaaccaaggaAG-AGAC

               1501   -   1551
RU01295        --> TTTATCACCCTCTTTCTTCAACCACCTAGCAATATTACCCTCAGACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- TTTATCACCCTCTTTCTTCAACCACCTTGCAATATTACCCTCAGACATAG
CT0076565      <-- TTTATCACCCTCTTTCTTCAACCACCTTGCAATATTACCCTCAGACATAG
ET0039790      <-- TTTATCACCCTCTTTCTTCAACCACCTAGCAATATTACCCTCAGACATAG
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> TTTATCACCCTCTTTCTTCAACCACCTAGCAATATTACCCTCAGACATAG
CT0065702      --> TTTATCACCCTCTTTCTTCAACCACCTAGCAATATTACCCTCAGACATAG
ET0088838      --> TTTATCACCCTCTTTCTTCAACCACCTTGCAATATTACCCTCAGACATAG

               1551   -   1601
RU01295        --> TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
CT0076565      <-- TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
ET0039790      <-- TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
CT0065702      --> TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA
ET0088838      --> TAGGTGAAAGAGAAGGCATTCCAATTTCTTGGTGTGGAGGAAGGCCTGCA

               1601   -   1651
RU01295        --> TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
CT0076565      <-- TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
ET0039790      <-- TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
CT0023123      <-- ................................CAAACATGAAATCTGATT
CT0077837      <-- .....................................ATGAAATCTGATT
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
CT0065702      --> TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT
ET0088838      --> TCAGACGAAAAGCCTCTCCTCAATTGTCCCTGCAAACATGAAATCTGATT

               1651   -   1701
RU01295        --> TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- TTTATATATTGATCCAGAAATTGAACTCCC....................
CT0076565      <-- TTTATATATTGATCCAGAAATTGAACTCCC....................
ET0039790      <-- TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGA..
CT0023123      <-- TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGAGA
CT0077837      <-- TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGAGA
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGAGA
CT0065702      --> TTTATATATTGATCCAGAAATTGAACTCCCCATATTCATTGTTGTTGAGA
ET0088838      --> TTTATATATTGATCCAGAAAT.............................

               1701   -   1751
RU01295        --> CATTACTGGTGAATGTGCCTGACACTGATTTAGTGCTACTGCTGAACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- CATTACTGGTGAATGTGCCTGACACTGATTTAGTGCTACTGCTGAACGAC
CT0077837      <-- CATTACTGGTGAATGTGCCTGACACTGATTTAGTGCTACTGCTGAACGAC
CT0004993      <-- ..................................................
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> CATTACTGGTGAATGTG.................................
CT0065702      --> CATTACTGGTGAATGTG.................................
ET0088838      --> ..................................................

               1751   -   1801
RU01295        --> CTACTTTCTCTTCCCAAAGGTGCAAAACCATGACGATGAACCTTATGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- CTACTTTCTCTTCCCAAAGGTGCAAAACCATGACGAT.............
CT0077837      <-- CTACTTTCTCTTCCCAAAGGTGCAAAACCATGACGATGAACCTTACGTAT
CT0004993      <-- ....................TGCAAAACCATGACGATGAACCTTATGTAT
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1801   -   1851
RU01295        --> ATCAGTAGTGGGTTGAGCATTGTGTGAAAAACAACGCACCAAGAGGGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ATCAGTAGTGGGTTGAGCATTGTGTGAAAAACAACGCAC...........
CT0004993      <-- ATCAGTAGTGGGTTGAGCATTGTGTGAAAAACAACGCACCAAGAGGGCAC
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1851   -   1901
RU01295        --> GATCATGCCTTAGTAAGTTGGGAGCATCCCTTAACCACACAGAGGCGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- GATCATGCCTTAGTAAGTTGGGAGCATCCCTTAACCACACAGAGGCGACA
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1901   -   1951
RU01295        --> AAGCAAGCCCCAACAACAACCCAAAGCAAAATTCAGATGCAAGCTCTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0042759      <-- ..................................................
CT0065418      <-- ..................................................
ET0076152      <-- ..................................................
ET0102273      <-- ..................................................
CT0019831      <-- ..................................................
CT0037211      <-- ..................................................
CT0014075      <-- ..................................................
ET0111420      <-- ..................................................
CT0047771      <-- ..................................................
ET0017623      <-- ..................................................
CT0035281      <-- ..................................................
ET0016727      <-- ..................................................
ET0080635      <-- ..................................................
CT0000982      <-- ..................................................
ET0136400      <-- ..................................................
CT0049374      <-- ..................................................
ET0126573      <-- ..................................................
CT0091033      <-- ..................................................
CT0083748      <-- ..................................................
CT0098566      <-- ..................................................
ET0122727      <-- ..................................................
CT0062360      <-- ..................................................
CT0076565      <-- ..................................................
ET0039790      <-- ..................................................
CT0023123      <-- ..................................................
CT0077837      <-- ..................................................
CT0004993      <-- AAGCAAGCCCCAACAACAACCCAAAGCAAAATTCAGATGCAAGCTCTGTG
ET0106640      --> ..................................................
ET0105693      --> ..................................................
RH16M177       --> ..................................................
CT0103957      --> ..................................................
CT0106037      --> ..................................................
CT0104875      --> ..................................................
CT0115294      --> ..................................................
CT0038447      --> ..................................................
CT0111064      --> ..................................................
CT0090890      --> ..................................................
CT0095087      --> ..................................................
ET0020746      --> ..................................................
ET0008925      --> ..................................................
ET0080177      --> ..................................................
CT0028563      --> ..................................................
CT0051586      --> ..................................................
CT0065702      --> ..................................................
ET0088838      --> ..................................................

               1951   -   2001
RU01295        --> AATAAACTAAAAAAA
                   ~~~~~~~~~~~~~~~
CT0042759      <-- ...............
CT0065418      <-- ...............
ET0076152      <-- ...............
ET0102273      <-- ...............
CT0019831      <-- ...............
CT0037211      <-- ...............
CT0014075      <-- ...............
ET0111420      <-- ...............
CT0047771      <-- ...............
ET0017623      <-- ...............
CT0035281      <-- ...............
ET0016727      <-- ...............
ET0080635      <-- ...............
CT0000982      <-- ...............
ET0136400      <-- ...............
CT0049374      <-- ...............
ET0126573      <-- ...............
CT0091033      <-- ...............
CT0083748      <-- ...............
CT0098566      <-- ...............
ET0122727      <-- ...............
CT0062360      <-- ...............
CT0076565      <-- ...............
ET0039790      <-- ...............
CT0023123      <-- ...............
CT0077837      <-- ...............
CT0004993      <-- AATAAACTAAAAAAA
ET0106640      --> ...............
ET0105693      --> ...............
RH16M177       --> ...............
CT0103957      --> ...............
CT0106037      --> ...............
CT0104875      --> ...............
CT0115294      --> ...............
CT0038447      --> ...............
CT0111064      --> ...............
CT0090890      --> ...............
CT0095087      --> ...............
ET0020746      --> ...............
ET0008925      --> ...............
ET0080177      --> ...............
CT0028563      --> ...............
CT0051586      --> ...............
CT0065702      --> ...............
ET0088838      --> ...............