SNPs of unigene RU01330
               1      -     51
RU01330        --> CCTTGTGAAAGACTATTTGAATGATATAAAAAGACGAAAGGGAGACTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- .......................ATATAAAAAGACGAAAGGGAGACTAGA
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> CCTTGTGAAAGACTATTTGAATGATATAAAAAGACGAAAGGGAGACTAGA
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               51     -    101
RU01330        --> CTTCCAAGTAATCAAATCAACTGTCTGGTGTACATGGAAGCAAGACAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- CTTCCAAGTAA-----TCAACTGTCTGGTGTACATGGAAGCAAGACAACC
CT0037452      <-- ......................................gtCAAGA-AACC
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> CTTCCAAGTAATCAAATCAACTGTCTGGTGTACATGGAAGCAAGACAACC
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               101    -    151
RU01330        --> CCAATAAATCATACATATTTATGTATTTACAAAGTCTAACCAGCCAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- CCAATAAATCATACATATTTATGTATTTACAAAGTCTAACCAGCCAACCT
CT0037452      <-- CCAATAAATCATACATATTTATGTATTTACAAAGTCTAACCAGCCAACCT
CT0008163      <-- ...ATAAATCATACATATTTATGTATTTACAAAGTCTAACCAGCCAACCT
CT0103809      <-- ...............TATTTATGTATTTACAAAGTCTAACCAGCCAACCT
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> CCAATAAATCATACATATTTATGTATTTACAAAGTCTAACCAGCCAACCT
CT0006954      --> ...............TATTTATGTATTTACAAAGTCTAACCAGCCAACCT
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               151    -    201
RU01330        --> AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
CT0037452      <-- AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
CT0008163      <-- AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
CT0103809      <-- AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
CT0006954      --> AGACAGCCAGGTGAGTTGAAACAATACAACAACTTTTCAGTTCCAACTTA
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               201    -    251
RU01330        --> CAAGTTACAATCACAACACCAGCTAGCTGCTCAAAGAAGGCCCAAAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- CAAGTTACAATCACAACACCAGCTAGCTGCTCCAAGAAGGCCCAAAGTAC
CT0037452      <-- CAAGTTACAATCACAACACCAGCTAGCTGCTCAAAGAAGGCCCAAAGTAC
CT0008163      <-- CAAGTTACAATCACAACACCAGCTAGCTGCTCAAAGAAGGCCCAAAGTAC
CT0103809      <-- CAAGTTACAATCACAACACCAGCTAGCTGCTCCAAGAAGGCCCAAAGTAC
RH11G149       <-- ................................................AC
RH43BK19       <-- ................................................at
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> CAAGTTACAATCACAACACCAGCTAGCTGCTCCAAGAAGGCCCAAAGTAC
RH06A87        --> ................................................AC
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               251    -    301
RU01330        --> ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGACGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGATGGAAT
CT0037452      <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGACGGAAT
CT0008163      <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGACGGAAT
CT0103809      <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGATGGAAT
RH11G149       <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGATGGAAT
RH43BK19       <-- ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGATGGAAT
ET0140310      <-- ......ATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGATGGAAT
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ATGCAGATGGGTGGATTGACCTTGAAGATA....................
RH06A87        --> ATGCAGATGGGTGGATTGACCTTGAAGATAGAGAGGATCGCGGACGGAAT
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               301    -    351
RU01330        --> TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCC.....
CT0037452      <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCG.............
CT0008163      <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCG.............
CT0103809      <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGC..............
RH11G149       <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
RH43BK19       <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
ET0140310      <-- TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> TGTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
ET0014218      --> .GTCCAAATCCCATCACCGCATATTAGACCCGAAGCGACTGCCCCTGCAA
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               351    -    401
RU01330        --> AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
RH43BK19       <-- AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
ET0140310      <-- AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
ET0014218      --> AATCCTCTGAATTCTGCCTATTCATTCGCTCCCATATAAACAATATCACT
CT0007090      --> ..................................TATAAACAATATCACT
CT0023303      --> ..................................TATAAACAATATCACT
CT0055511      --> ..................................TATAAACAATATCACT
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               401    -    451
RU01330        --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
RH43BK19       <-- GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
ET0140310      <-- GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
ET0014218      --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
CT0007090      --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
CT0023303      --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
CT0055511      --> GTCCCGACAAACATATCAATGGCAAAGTAGGCTCCGATGTAGAATGGGAC
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               451    -    501
RU01330        --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
RH43BK19       <-- TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
ET0140310      <-- TGCCATAGCCATTGGAATAGGAATATATT.....................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
ET0014218      --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
CT0007090      --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
CT0023303      --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
CT0055511      --> TGCCATAGCCATTGGAATAGGAATATATTGGGATACCTTCTTAGGAGTCA
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               501    -    551
RU01330        --> CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- CGTCTCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
RH43BK19       <-- CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> CGTCTCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
ET0014218      --> CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCG......
CT0007090      --> CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
CT0023303      --> CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
CT0055511      --> CGTCCCTCAAGAGGTTTATCACCAAAGCAGCCACAAAGAAACCGCAACAC
ET0099212      --> ..................................................
RH25AC92       --> ..................................................

               551    -    601
RU01330        --> ATAGCCAAGCAGTGCTTTGGCAGCTCAGAGAAGCCTTCAATACCTAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................  Control
CT0037452      <-- ..................................................  Control
CT0008163      <-- ..................................................  Control
CT0103809      <-- ..................................................  Control
RH11G149       <-- ATAGCCAAGCAGTGCTTTGGCAGCTCGGAGAAGCCTTCAATACCTAAAAT  WaterDS
RH43BK19       <-- ATAGCCAAGCAGTGCTTTGGCAGCTCGGAGAAGCCTTCAATACCTAAAAT  WaterDS
ET0140310      <-- ..................................................  Ethylene
CT0006132      <-- ..................................................  Control
ET0011389      <-- ..................................................  Ethylene
CT0037381      <-- ..................................................  Control
CT0101864      --> ..................................................  Control
CT0006954      --> ..................................................  Control
RH06A87        --> ATAGCCAAGCAGTGCTTTGGCAGCTCGGAGAAGCCTTCAATACCTAAAAT  WaterDS
ET0014218      --> ..................................................  Ethylene
CT0007090      --> ATAGCCAAGCAGTGCTTTGGCAGCTCAGAGAAGCCTTCAATACCTAAAAT  Control
CT0023303      --> ATAGCCAAGCAGTGCTTTGGCAGCTCAGAGAAGCCTTCAATACCTAAAAT  Control
CT0055511      --> ATAGCCAAGCAGTGCTTTGGCAGCTCAGAGAAGCCTTCAATACCTAAAAT  Control
ET0099212      --> ............gctTTTGGCAGCTCGGAGAAGCCTTCAATACCTAAAAT  Ethylene
RH25AC92       --> ..................................................  WaterDS

               601    -    651
RU01330        --> TGCCATTTCCCTGAATATTACAGCATATGGTGCTTTGTACGGACCATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- TGCCATTTCCCTGAATATTACAGCATATGGTGCTTTGT............
RH43BK19       <-- TGCCATTTCCCTGAATATTACAGCATATGGTGCTTTGT............
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> TGCCATTTCCCTGAATATTACAGCATATGGTGCTTTGT............
ET0014218      --> ..................................................
CT0007090      --> TGCCATTTCCCTGAATATTACAG...........................
CT0023303      --> TGCCATTTCCCTGAATATTACAG...........................
CT0055511      --> TGCCATTTCCCTGAATATTACAG...........................
ET0099212      --> TGCCATTTCCCTGAATATTACAGCATATGGTGCTTTGTACGGACCATCAG
RH25AC92       --> ......................................ACGGACCATCGG

               651    -    701
RU01330        --> GTGAGCCAATATCAAAAGCAGTCCAAAACAACCAAAATGTTAATGGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> GTGAGCCAATATCAAAAGCAGTCCAAAACAACCAAAATGTTAATGGAGCT
RH25AC92       --> GTGAGCCAATATCAAAAGCAGTCCAAAACAACCAAAATGTTAATGGAGCT

               701    -    751
RU01330        --> ATCACACAACCCATGGCTGTTCCCACTAACTGGCTGATAAACATAGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ATCACACAACCCATGGCTGTTCCCACTAACTGGCTGATAAACATAGACTT
RH25AC92       --> ATCACACAACCCATGGCTGTTCCCACTAACTGGCTGATAAACATAGACTT

               751    -    801
RU01330        --> GGCCGAGGACATGGTGAGGTAACCTGTCTTGAAGTCTTGCATGAGATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..CCGAGGACATGGTGAGGTAACCTGTCTTGAAGTCTTGCATGAGATCGG
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> GGCCGAGGACATGGTGAGGTAACCTGTCTTGAAGTCTTGCATGAGATCGG
RH25AC92       --> GGCCGAGGACATGGTGAGGTAACCTGTCTTGAAGTCTTGCATGAGATCGG

               801    -    851
RU01330        --> CTGCGGTAGAGACAATGGACATCATCACCCCACAAGCAGCTAAACCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- CTGCGGTAGAGACAATGGACATCATCACCCCACAAGCAGCTAAACCAGCT
ET0011389      <-- ........................................TAAACCAGCT
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> CTGCGGTAGAGACAATGGACATCATCACCCCACAAGCAGCTAAACCAGCT

               851    -    901
RU01330        --> ATAACCCCACCATCACTTCCCACTAATGAAGCAATGATGAAAAGACCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ATAACCCCACCATCACTTCCCACTAATGAAGCAATGATGAAAAGACCTAT
ET0011389      <-- ATAACCCCACCATCACTTCCCACTAATGAAGCAATGATGAAAAGACCTAT
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ATAACCCCACCATCACTTCCCACTAATGAAGCAATGATGAAAAGACCTAT

               901    -    951
RU01330        --> TTTCCCATAAGTTGAAGCTAAACTCCAGTCTGTGAGGCCAGTGCCATAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- TTTCCCATAAGTTGAAGCTAAACTCCAGTCTGTGAGGCCAGTGCCATAGG
ET0011389      <-- TTTCCCATAAGTTGAAGCTAAACTCCAGTCTGTGAGGCCAGTGCCATAGG
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TTTCCCATAAGTTGAAGCTAAACTCCAGTCTGTGAGGCCAGTGCCATAGG

               951    -   1001
RU01330        --> AGTTGCAAAAGGCAAGAGCAGGAGCAAGGATGTATGAGCACAGCACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- AGTTGCAAAAGGCAAGAGCAGGAGCAAGGA....................
ET0011389      <-- AGTTGCAAAAGGCAAGAGCAGGAGCAAGGATGT.................
CT0037381      <-- .....CAAAAGGCAAGAGCAGGAGCAAGGATGTATGAGCACAGCACCAAA
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> AGTTGCAAAAGGCAAGAGCAGGAGCAAGGATGTATGAGCACAGCACCAAA

               1001   -   1051
RU01330        --> TACCATTTGAGAGGCGGAAAGATAATTGGCATTGTTGCTGTCGATATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- TACCATTTGAGAGGCGGAAAGATAATTGGCATTGTTGCTGTCGATATTGC
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TACCATTTGAGAGGCGGAAAGATAATTGGCATTGTTGCTGTCGATATTGC

               1051   -   1101
RU01330        --> CACCAGGGCCACATATCCAGAACCGGCAACCCAGTTTGGTATTCTATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- CACCAGGGCCACATATCCAGAACCGGCAACCCAGTTTGGTATTCTATCCT
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> CACCAGGGCCACATATCCAGAACCGGCAACCCAGTTTGGTATTCTATCCT

               1101   -   1151
RU01330        --> TGAGAAATACCTCATCCCTCTTTTTTTGTTCCAGGTTTACTTCAGAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- TGAGAAATACCTCATCCCTCTTTTTTTGTTCCAGGTTTACTTCAGAACTC
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TGAGAAATACCTCATCCCTCTTTTTTTGTTCCAGGGTTACTTCAGAACTC

               1151   -   1201
RU01330        --> TCGCCATCCAACTTTTCTTTAACCAAAGGAAGATTGCTCTGTATACTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- TCACCATCCAACTTTTCTTTAACCAAAGGAAGATTGCTCTGTATACTACT
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TCGCCATCCAACTTTTCTTTAACCAAAGGAAGATTGCTCTGTATACTACT

               1201   -   1251
RU01330        --> TTTATTGCATATTTCCTTGATGGTAATGGCTATAATCTTGATCAAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- TTTA..............................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TTTATTGCATATTTCCTTGATGGTAATGGCTATAATCTTGATCAAATTGT

               1251   -   1301
RU01330        --> ATAGACCATCCCCCAAAATAAGGGCAATAGCTATGAAGACCTTATATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> ATAGACCATCCCCCAAAATAAGGGCAATAGCTATGAAGACCTTATATCCA

               1301   -   1351
RU01330        --> TAAAGACCTTTGAAATCATTGCTACCAAGGTCAGCTGGATACCAGTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0139926      <-- ..................................................
CT0037452      <-- ..................................................
CT0008163      <-- ..................................................
CT0103809      <-- ..................................................
RH11G149       <-- ..................................................
RH43BK19       <-- ..................................................
ET0140310      <-- ..................................................
CT0006132      <-- ..................................................
ET0011389      <-- ..................................................
CT0037381      <-- ..................................................
CT0101864      --> ..................................................
CT0006954      --> ..................................................
RH06A87        --> ..................................................
ET0014218      --> ..................................................
CT0007090      --> ..................................................
CT0023303      --> ..................................................
CT0055511      --> ..................................................
ET0099212      --> ..................................................
RH25AC92       --> TAAAGACCTTTGAAATCATTGCTACCAAGGTCAGCTGGATACCAGTGCCC

               1351   -   1401
RU01330        --> AGCATGT
                   ~~~~~~~
CT0139926      <-- .......
CT0037452      <-- .......
CT0008163      <-- .......
CT0103809      <-- .......
RH11G149       <-- .......
RH43BK19       <-- .......
ET0140310      <-- .......
CT0006132      <-- .......
ET0011389      <-- .......
CT0037381      <-- .......
CT0101864      --> .......
CT0006954      --> .......
RH06A87        --> .......
ET0014218      --> .......
CT0007090      --> .......
CT0023303      --> .......
CT0055511      --> .......
ET0099212      --> .......
RH25AC92       --> AGCATGT