SNPs of unigene RU01473
               1      -     51
RU01473        --> CTCTTTTTCCCTTTCTTTCTCTCTCTGTCTAATCAAAAA-GGGGTTC-TC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ...............TTTCTCTCTCTGTCTAATCAAAAA-GGGGTTC-TC
ET0018049      <-- ......................CTCTGTCTAATCAAAAA-GGGGTTC-TC
ET0081154      <-- .................................CAAAAA-GGGTTTC-TC
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> CTCTTTTTCCCTTTCTTTCTCTCTCTGTCTAATCAAAAA-GGGGTTC-TC
CT0136079      --> ...............TTTCTCTCTCTGTCTAATCAAAAA-GGGGTTCGTC
RH11H6         --> ...............TTTCTCTCTCTGTCTAATCAAAAA-GGGGTTC-TC
CT0128539      --> ......................CTCTGTCTAATCAAAAA-GGGTTTC-TC
CT0137618      --> ..........................GTCTAATCAAAAA-GGGGTTC-TC
CT0040042      --> ..............................AATCAAAAAAGGGGTTC-TC
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               51     -    101
RU01473        --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
ET0018049      <-- AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
ET0081154      <-- AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
CT0136079      --> AAACGCGCCGAGC-TTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
RH11H6         --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
CT0128539      --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
CT0137618      --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
CT0040042      --> AAACGCGCCGAGCCTTCCTCACCGCCTCCGACTCTCCGATCCCTCTTCGA
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               101    -    151
RU01473        --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
ET0018049      <-- CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
ET0081154      <-- CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0136079      --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
RH11H6         --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0128539      --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0137618      --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0040042      --> CTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0094650      --> ...........AGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATT
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               151    -    201
RU01473        --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
ET0018049      <-- AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
ET0081154      <-- AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
ET0041263      <-- ....................TGCAGCGCCGCTGGACCCTGCAGCTTTTGC
ET0067560      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0072532      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0072913      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0074194      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0074332      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0074876      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0094549      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0097295      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0101366      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0106467      <-- .........................CGCCGCTGGACCCTGCAGCTTTTGC
ET0065733      <-- ..........................GCCGCTGGACCCTGCAGCTTTTGC
ET0102603      <-- ..........................GCCGCTGGACCCTGCAGCTTTTGC
CT0118168      <-- ...........................................CTTTTGC
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0136079      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
RH11H6         --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0128539      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0137618      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0040042      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0094650      --> AAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGC
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               201    -    251
RU01473        --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0018049      <-- GGATGCAGTGGTCCAGATTT..............................
ET0081154      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0041263      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0067560      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0072532      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0072913      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0074194      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0074332      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0074876      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0094549      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0097295      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0101366      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0106467      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0065733      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0102603      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
CT0118168      <-- GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGT...........
CT0136079      --> GGATGCAGTGGTCCAGATTTTATCTGGATAAATGCTGGTGATCTGGAACT
RH11H6         --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
CT0128539      --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
CT0137618      --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
CT0040042      --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGtaat
CT0094650      --> GGATGCAGTGGTCCAGATTT-ATCTGGATAA-TGCTGGTGATCTGGAACT
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               251    -    301
RU01473        --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  WaterDS
ET0018049      <-- ..................................................  Ethylene
ET0081154      <-- TATTGCCAAGAGCATTGAATCTTCAGACC.....................  Ethylene
ET0041263      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG  Ethylene
ET0067560      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0072532      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0072913      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0074194      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0074332      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0074876      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0094549      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0097295      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0101366      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0106467      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0065733      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
ET0102603      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  Ethylene
CT0118168      <-- TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG  Control
ET0089063      <-- ..................................................  Ethylene
ET0064190      <-- ..................................................  Ethylene
ET0068611      <-- ..................................................  Ethylene
ET0091787      <-- ..................................................  Ethylene
ET0031786      <-- ..................................................  Ethylene
ET0050863      <-- ..................................................  Ethylene
ET0040841      <-- ..................................................  Ethylene
CT0032229      <-- ..................................................  Control
CT0108305      <-- ..................................................  Control
ET0071103      <-- ..................................................  Ethylene
ET0008581      <-- ..................................................  Ethylene
ET0009273      <-- ..................................................  Ethylene
ET0114755      <-- ..................................................  Ethylene
CT0058539      <-- ..................................................  Control
CT0034121      <-- ..................................................  Control
ET0035501      <-- ..................................................  Ethylene
ET0075701      <-- ..................................................  Ethylene
ET0118913      <-- ..................................................  Ethylene
CT0011998      <-- ..................................................  Control
CT0023290      <-- ..................................................  Control
CT0009567      <-- ..................................................  Control
CT0006107      <-- ..................................................  Control
CT0071253      <-- ..................................................  Control
ET0118019      <-- ..................................................  Ethylene
CT0073959      <-- ..................................................  Control
ET0064688      <-- ..................................................  Ethylene
ET0064587      <-- ..................................................  Ethylene
ET0064768      <-- ..................................................  Ethylene
ET0036537      --> ..................................................  Ethylene
CT0136079      --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG  Control
RH11H6         --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTG  WaterDS
CT0128539      --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG  Control
CT0137618      --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTG  Control
CT0040042      --> tgttagctttgcgttggtgatcttg.........................  Control
CT0094650      --> TATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGT.  Control
CT0009431      --> ..................................................  Control
CT0008231      --> ..................................................  Control
CT0056098      --> ..................................................  Control
ET0125179      --> ..................................................  Ethylene
CT0054526      --> ..................................................  Control
CT0068904      --> ..................................................  Control
ET0053267      --> ..................................................  Ethylene
CT0092436      --> ..................................................  Control
ET0005502      --> ..................................................  Ethylene
ET0113737      --> ..................................................  Ethylene
ET0116461      --> ..................................................  Ethylene
ET0118090      --> ..................................................  Ethylene
ET0119602      --> ..................................................  Ethylene
ET0120699      --> ..................................................  Ethylene
ET0121223      --> ..................................................  Ethylene
ET0122318      --> ..................................................  Ethylene
ET0123994      --> ..................................................  Ethylene
ET0124335      --> ..................................................  Ethylene
ET0121199      --> ..................................................  Ethylene
ET0125992      --> ..................................................  Ethylene
CT0006125      --> ..................................................  Control
ET0119021      --> ..................................................  Ethylene
ET0133837      --> ..................................................  Ethylene
ET0004961      --> ..................................................  Ethylene
CT0109446      --> ..................................................  Control
CT0071287      --> ..................................................  Control
CT0073084      --> ..................................................  Control
ET0036251      --> ..................................................  Ethylene
ET0014838      --> ..................................................  Ethylene
CT0061816      --> ..................................................  Control
ET0085912      --> ..................................................  Ethylene
ET0100831      --> ..................................................  Ethylene
ET0109943      --> ..................................................  Ethylene
CT0065411      --> ..................................................  Control
CT0044871      --> ..................................................  Control

               301    -    351
RU01473        --> ACACCTTTTTTG-AGGTTGTTCTCACTGGGGGCCGTACACAACCTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ACACCTTTTTTG-AGGTTGTTCTCACTGGGGGCCGT..............  WaterDS
ET0018049      <-- ..................................................  Ethylene
ET0081154      <-- ..................................................  Ethylene
ET0041263      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0067560      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0072532      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0072913      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0074194      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0074332      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0074876      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0094549      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0097295      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0101366      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0106467      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0065733      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0102603      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
CT0118168      <-- ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Control
ET0089063      <-- ..ACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0064190      <-- ......TTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0068611      <-- ......TTTTTGTAGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0091787      <-- ......TTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0031786      <-- ....................ttTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0050863      <-- ....................ttTCACTGGGGGCCGTACACAACCTGGAAC  Ethylene
ET0040841      <-- ............................GGGGCCGTACACAACCTGGAAC  Ethylene
CT0032229      <-- ..........................................CCTGGAAC  Control
CT0108305      <-- ..................................................  Control
ET0071103      <-- ..................................................  Ethylene
ET0008581      <-- ..................................................  Ethylene
ET0009273      <-- ..................................................  Ethylene
ET0114755      <-- ..................................................  Ethylene
CT0058539      <-- ..................................................  Control
CT0034121      <-- ..................................................  Control
ET0035501      <-- ..................................................  Ethylene
ET0075701      <-- ..................................................  Ethylene
ET0118913      <-- ..................................................  Ethylene
CT0011998      <-- ..................................................  Control
CT0023290      <-- ..................................................  Control
CT0009567      <-- ..................................................  Control
CT0006107      <-- ..................................................  Control
CT0071253      <-- ..................................................  Control
ET0118019      <-- ..................................................  Ethylene
CT0073959      <-- ..................................................  Control
ET0064688      <-- ..................................................  Ethylene
ET0064587      <-- ..................................................  Ethylene
ET0064768      <-- ..................................................  Ethylene
ET0036537      --> ..................................................  Ethylene
CT0136079      --> ACACCTTTTTTGt.....................................  Control
RH11H6         --> ACACCTTTTTTG-AGGTTGTTCTCACTGGGGGCCGT..............  WaterDS
CT0128539      --> ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCCGTACACAACCTGG...  Control
CT0137618      --> ACACCTTTTTTG-AGGTTGTTTTCACTGGGGGCC................  Control
CT0040042      --> ..................................................  Control
CT0094650      --> ..................................................  Control
CT0009431      --> ..................................................  Control
CT0008231      --> ..................................................  Control
CT0056098      --> ..................................................  Control
ET0125179      --> ..................................................  Ethylene
CT0054526      --> ..................................................  Control
CT0068904      --> ..................................................  Control
ET0053267      --> ..................................................  Ethylene
CT0092436      --> ..................................................  Control
ET0005502      --> ..................................................  Ethylene
ET0113737      --> ..................................................  Ethylene
ET0116461      --> ..................................................  Ethylene
ET0118090      --> ..................................................  Ethylene
ET0119602      --> ..................................................  Ethylene
ET0120699      --> ..................................................  Ethylene
ET0121223      --> ..................................................  Ethylene
ET0122318      --> ..................................................  Ethylene
ET0123994      --> ..................................................  Ethylene
ET0124335      --> ..................................................  Ethylene
ET0121199      --> ..................................................  Ethylene
ET0125992      --> ..................................................  Ethylene
CT0006125      --> ..................................................  Control
ET0119021      --> ..................................................  Ethylene
ET0133837      --> ..................................................  Ethylene
ET0004961      --> ..................................................  Ethylene
CT0109446      --> ..................................................  Control
CT0071287      --> ..................................................  Control
CT0073084      --> ..................................................  Control
ET0036251      --> ..................................................  Ethylene
ET0014838      --> ..................................................  Ethylene
CT0061816      --> ..................................................  Control
ET0085912      --> ..................................................  Ethylene
ET0100831      --> ..................................................  Ethylene
ET0109943      --> ..................................................  Ethylene
CT0065411      --> ..................................................  Control
CT0044871      --> ..................................................  Control

               351    -    401
RU01473        --> AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACT........
ET0067560      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0072532      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0072913      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0074194      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0074332      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0074876      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0094549      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0097295      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0101366      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0106467      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0065733      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0102603      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
CT0118168      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0089063      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0064190      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0068611      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0091787      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0031786      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0050863      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
ET0040841      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
CT0032229      <-- AACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTG
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> .................................................G
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               401    -    451
RU01473        --> AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- AGCCTAGAacgtagaaagtacaat..........................
ET0072532      <-- AGCCTAGACGTGAAGTCAT...............................
ET0072913      <-- AGCCTAGACGTGtaagttctatt...........................
ET0074194      <-- AGCCTAGACGTGAAGTCAT...............................
ET0074332      <-- AGCCTAGACGTGAAGTCAT...............................
ET0074876      <-- AGCCTAGACGTGAAGTCAT...............................
ET0094549      <-- AGCCTAGACGTGAAGTCAT...............................
ET0097295      <-- AGCCTAGACGTGAAGTCAT...............................
ET0101366      <-- AGCCTAGACGTGAAGTCAT...............................
ET0106467      <-- AGCCTAGACGTGAAGTCAT...............................
ET0065733      <-- AGCCTAGACGTGAAGTCAT...............................
ET0102603      <-- AGCCTAGACGTGAAGTCAT...............................
CT0118168      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTAacaa.........
ET0089063      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0064190      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0068611      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0091787      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0031786      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0050863      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
ET0040841      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
CT0032229      <-- AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> AGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATT
CT0008231      --> ..........................................AAAAGATT
CT0056098      --> ..............................................GATT
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               451    -    501
RU01473        --> TTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0064190      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0068611      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0091787      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0031786      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0050863      <-- TTGAGGCGGAGGCCATcaagcag...........................
ET0040841      <-- TTGAGGCGGAGGCCATcaagcag...........................
CT0032229      <-- TTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACG
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> TTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACG
CT0008231      --> TTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACG
CT0056098      --> TTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACG
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               501    -    551
RU01473        --> TTTCCTTCAGTCATTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- TTTCCTTCAGTCAT....................................
CT0108305      <-- .................................................c
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> TTTCCTTCAGTCATTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGG
CT0008231      --> TTTCCTTCAGTCATTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGG
CT0056098      --> TTTCCTTCAGTCATTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGG
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               551    -    601
RU01473        --> CAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- gAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCG
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> CAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCG
CT0008231      --> CAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCG
CT0056098      --> CAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCG
ET0125179      --> .....................aagactaattacaaggaactttaCCACCG
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               601    -    651
RU01473        --> GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTTGTTGGCAAAGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTTGTTGGCAAAGGGC
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTT.............
CT0008231      --> GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTTGTTGGCAAAGGGC
CT0056098      --> GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTTGTTGGCAAAGGGC
ET0125179      --> GAAACGGTGTTCCAGCCAATGCTCAAGG-ATAATCTTGTTGGCAAAGGGC
CT0054526      --> ....................GCTCAAGGGATAATCTTGTTGGCAAAGGGC
CT0068904      --> ....................GCTCAAGG-ATAATCTTGTTGGCAAAGGGC
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               651    -    701
RU01473        --> TAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- TAGTTCTATCATTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
ET0071103      <-- ........TCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> TAGTT.............................................
CT0056098      --> TAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTAT............
ET0125179      --> TAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
CT0054526      --> TAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
CT0068904      --> TAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
ET0053267      --> .....CTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
CT0092436      --> ..........GTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAAT
ET0005502      --> ....................GAGTTCTTCAAGGAGTATCTGATTGACAAT
ET0113737      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0116461      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0118090      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0119602      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0120699      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0121223      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0122318      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0123994      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0124335      --> ........................TCTTCAAGGAGTATCTGATTGACAAT
ET0121199      --> .......................tctTTCAAGGAGTATCTGATTGACAAT
ET0125992      --> ......................ttctTTCAAGGAGTATCTGATTGACAAT
CT0006125      --> .............................................ACAAT
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               701    -    751
RU01473        --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0071103      <-- AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
CT0054526      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
CT0068904      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0053267      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
CT0092436      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0005502      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0113737      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0116461      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0118090      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0119602      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0120699      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0121223      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0122318      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0123994      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0124335      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0121199      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0125992      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
CT0006125      --> AGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAA
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               751    -    801
RU01473        --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAG.......
ET0071103      <-- TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0008581      <-- ..............TTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> TCCTTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
CT0054526      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
CT0068904      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0053267      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
CT0092436      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0005502      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0113737      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0116461      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0118090      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0119602      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0120699      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0121223      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0122318      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0123994      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0124335      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0121199      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0125992      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
CT0006125      --> TC-TTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCT
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               801    -    851
RU01473        --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0008581      <-- GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0009273      <-- ....ATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0114755      <-- .................................................A
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTT..................
CT0054526      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
CT0068904      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0053267      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAATAGAA
CT0092436      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0005502      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0113737      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0116461      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0118090      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0119602      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0120699      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0121223      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0122318      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0123994      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAAATACAAT-GAA
ET0124335      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0121199      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0125992      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
CT0006125      --> GAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAA-TACAAT-GAA
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               851    -    901
RU01473        --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- AAGAAG-ATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGA...
ET0008581      <-- AAGAAG-ATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAA
ET0009273      <-- AAGAAG-ATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAA
ET0114755      <-- AAGAAG-ATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAA
CT0058539      <-- .................................................A
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAG.....................
CT0068904      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAA......................
ET0053267      --> AAGAAGTATTTTTGAGGTGAAG............................
CT0092436      --> AAGAAG-ATTTTTGAGG.................................
ET0005502      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAA......................
ET0113737      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0116461      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0118090      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0119602      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0120699      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0121223      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0122318      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0123994      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAG.....................
ET0124335      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
ET0121199      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAG.....................
ET0125992      --> AAGAAG-ATTTTTGAGGTGAAGCTTAAAGA....................
CT0006125      --> AAGAAG-ATTTTTGAGGTGAAG............................
ET0119021      --> ..........................AAGATATGAAATCTGCTTTGACAA
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               901    -    951
RU01473        --> CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
ET0009273      <-- CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
ET0114755      <-- CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
CT0058539      <-- CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
CT0034121      <-- .....gatACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
ET0035501      <-- ...............AAACTGATATATCTGAAGTCATAGAAACTGTGAAG
ET0075701      <-- ...........................................TGTGAAG
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> CCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAG
ET0133837      --> ......................TATATCTGAAGTCATAGAAACTGTGAAG
ET0004961      --> .......................ATATCTGAAGTCATAGAAACTGTGAAG
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               951    -   1001
RU01473        --> CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
ET0009273      <-- CAGCGCGTTAAAGATGC.................................
ET0114755      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTT...........
CT0058539      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
CT0034121      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
ET0035501      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
ET0075701      <-- CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGTTTGTGCGTATCCT
ET0133837      --> CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
ET0004961      --> CAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCT
CT0109446      --> ..........................AGATGTTGAGGTTGTGCGTATCCT
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1001   -   1051
RU01473        --> GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- GTGGG.............................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- GTGGG-ATGTT-ATTATGGA-TGCTGTtgctgattcttacccagaccact
CT0034121      <-- GTGGGGATGTT-A.....................................
ET0035501      <-- GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
ET0075701      <-- GGGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
ET0118913      <-- ................................TGGTCTGGTAAGAATCAG
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
ET0133837      --> GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
ET0004961      --> GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
CT0109446      --> GTGGG-ATGTT-ATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
CT0071287      --> ..GGG-ATGTTTATTATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
CT0073084      --> ..............TATGGAGTGCTGTGGCAGTGGTCTGGTAAGAATCAG
ET0036251      --> ..............TATGGA-TGCTGTG-CAGTGGTCTGGTAAGAATCAG
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1051   -   1101
RU01473        --> CAACAGAATGCCAATGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- gcaca.............................................
CT0034121      <-- ..................................................
ET0035501      <-- CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
ET0075701      <-- CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
ET0118913      <-- CAACAGAATGCCAATGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
CT0011998      <-- ...................CTCTTCGCCAGGTGAAAACATGGGCACAACT
CT0023290      <-- ...................CTCTTCGCCAGGTGAAAACATGGGCACAACT
CT0009567      <-- .....................CTTTGCCAGGTGAAAACATGGGCACAACT
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAA..
ET0133837      --> CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
ET0004961      --> CAACAGAATGCCAACGCA................................
CT0109446      --> CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
CT0071287      --> CAACAGAATGCCAACGCAGCTCTTCGCCAGGT..................
CT0073084      --> CAACAGAATGCCAACGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
ET0036251      --> CAACAGAATGCCAATGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACT
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1101   -   1151
RU01473        --> GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- GTTGAATGCCTTCTGCACCAATGGGAAGC.....................
ET0075701      <-- GTTGAATGCCTTCTGCAac...............................
ET0118913      <-- GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
CT0011998      <-- GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
CT0023290      <-- GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
CT0009567      <-- GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
CT0006107      <-- ...........TCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
CT0071253      <-- ..................................CTGGAGCTGATATACA
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAG................
ET0004961      --> ..................................................
CT0109446      --> GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAG..........
CT0071287      --> ..................................................
CT0073084      --> GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
ET0036251      --> GTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACA
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1151   -   1201
RU01473        --> AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
CT0011998      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
CT0023290      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
CT0009567      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
CT0006107      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
CT0071253      <-- AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
ET0036251      --> AAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCT
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1201   -   1251
RU01473        --> GAAATTGTTAGGTCTCTGTATGACCAGGATGTGCTTGCAGAAGACACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- GAAATTGTTAGGTCGCTGTATGA...........................
CT0011998      <-- GAAATTGTTA........................................
CT0023290      <-- GAAATTGTTA........................................
CT0009567      <-- GAAATTGTTAGGTCTCTGTATGACCAGGATGTGCTTGCAGAAGACACTAT
CT0006107      <-- GAAATTGTTAGGTCGCTGTATGAGCAGGATGTGCTTGCAGAAGACACTAT
CT0071253      <-- GAAATTGTTAGGTCTCTGTATGACCAGGATGTGCTTGCAGAAGACACTAT
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> GAAATT............................................
ET0036251      --> GAAATT............................................
ET0014838      --> GAAATTGTTAGGTCTCTGTATGACCAGGATGTGCTTGCAGAAGACACTAT
CT0061816      --> ................................GCTTGCAGAAGACACTAT
ET0085912      --> ................................GCTTGCAGAAGACACTAT
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1251   -   1301
RU01473        --> CCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- CCTCCATTGGTTCCGCAAAGGAA...........................
CT0006107      <-- CCTCCATTGGTTCCGCAAAG..............................
CT0071253      <-- CCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTG
ET0118019      <-- ..................................................
CT0073959      <-- ..................................................
ET0064688      <-- ..................................................
ET0064587      <-- ..................................................
ET0064768      <-- ..................................................
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> CCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTG
CT0061816      --> CCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTG
ET0085912      --> CCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTG
ET0100831      --> ............................CCCAAGGGCAGGCAAACATTTG
ET0109943      --> ............................aattgtGGCAGGCAAACATTTG
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1301   -   1351
RU01473        --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- TGAAAGCTCTGGAGCCTTTTGTGAAGTGagcagg................
ET0118019      <-- ............AGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
CT0073959      <-- .................TTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
ET0064688      <-- ...............................................GAG
ET0064587      <-- ................................................AG
ET0064768      <-- ................................................AG
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
CT0061816      --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
ET0085912      --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAATAG
ET0100831      --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
ET0109943      --> TGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAG
CT0065411      --> ..................................................
CT0044871      --> ..................................................

               1351   -   1401
RU01473        --> GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
CT0073959      <-- GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0064688      <-- GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0064587      <-- GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0064768      <-- GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
CT0061816      --> GAATAGATGCAGCTGCTGATGTTGTGATG.....................
ET0085912      --> GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0100831      --> GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
ET0109943      --> GAATAGATGCAGCTGCTGATGTTGTGATGCTATTCACTGCCTGTCGTATT
CT0065411      --> ..................................CACTGCCTGTCGTATT
CT0044871      --> ..................................................

               1401   -   1451
RU01473        --> ATGTCTTATGTGTTTTTTTTTTTTCTAGTTT-CAAGAGAAGCAACTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- ATGTCTTATGTGTTTTTTTTT--TCTAGTTT-CAAGAGAAGCAACTCATA
CT0073959      <-- ATGTCTTATGTGTTTTTTTTT--TCTAGTTT-CAAGAGAAGCAACTCATA
ET0064688      <-- ATGTCTTATGTGTTTTTTT---TTCTAGTTT-CAAGAGAAGCAACTCATA
ET0064587      <-- ATGTCTTATGTGTTTTTTT---TTCTAGTTT-CAAGAGAAGCAACTCATA
ET0064768      <-- ATGTCTTATGTGTTTTTTTTTTCT-TAGTTT-CAAGAGAAGCAACTCATA
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ATGTCTTATGTTTGTTTTTTTTTTC-AGTTT-CAA...............
CT0061816      --> ..................................................
ET0085912      --> ATGTCTTATGT-TGTTTTTTTTTTC-AGTTTTCAAGAGAAGCAACTC...
ET0100831      --> ATGTCTTATGTTGTTTTTTTTTTTCTAGTTTTCAAGAGAAGCAACTCATA
ET0109943      --> ATGTCTTATGT--TGTTTTTTTTTCTAGTTT-CAAGAGAAGCAACTCATA
CT0065411      --> ATGTCTTATGTTGTTTTTTTTTTTCTAGTTT-CAAGAGAAGCAACTCATA
CT0044871      --> ................TTTTTTTTCTAGTTT-CAAGAGAAGCAACTCATA

               1451   -   1501
RU01473        --> AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
CT0073959      <-- AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
ET0064688      <-- AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
ET0064587      <-- AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
ET0064768      <-- AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTG.........
ET0109943      --> AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTG.........
CT0065411      --> AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT
CT0044871      --> AATATTCTATATAACCTCCTTGTAAGGTTTGGTGTGCCTTGTATGATGAT

               1501   -   1551
RU01473        --> GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTATTAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH03B73        <-- ..................................................
ET0018049      <-- ..................................................
ET0081154      <-- ..................................................
ET0041263      <-- ..................................................
ET0067560      <-- ..................................................
ET0072532      <-- ..................................................
ET0072913      <-- ..................................................
ET0074194      <-- ..................................................
ET0074332      <-- ..................................................
ET0074876      <-- ..................................................
ET0094549      <-- ..................................................
ET0097295      <-- ..................................................
ET0101366      <-- ..................................................
ET0106467      <-- ..................................................
ET0065733      <-- ..................................................
ET0102603      <-- ..................................................
CT0118168      <-- ..................................................
ET0089063      <-- ..................................................
ET0064190      <-- ..................................................
ET0068611      <-- ..................................................
ET0091787      <-- ..................................................
ET0031786      <-- ..................................................
ET0050863      <-- ..................................................
ET0040841      <-- ..................................................
CT0032229      <-- ..................................................
CT0108305      <-- ..................................................
ET0071103      <-- ..................................................
ET0008581      <-- ..................................................
ET0009273      <-- ..................................................
ET0114755      <-- ..................................................
CT0058539      <-- ..................................................
CT0034121      <-- ..................................................
ET0035501      <-- ..................................................
ET0075701      <-- ..................................................
ET0118913      <-- ..................................................
CT0011998      <-- ..................................................
CT0023290      <-- ..................................................
CT0009567      <-- ..................................................
CT0006107      <-- ..................................................
CT0071253      <-- ..................................................
ET0118019      <-- GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTATTAAAA..
CT0073959      <-- GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTT.........
ET0064688      <-- GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTATTAAAAAA
ET0064587      <-- GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTATTAAAAAA
ET0064768      <-- GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTATTAAAAAA
ET0036537      --> ..................................................
CT0136079      --> ..................................................
RH11H6         --> ..................................................
CT0128539      --> ..................................................
CT0137618      --> ..................................................
CT0040042      --> ..................................................
CT0094650      --> ..................................................
CT0009431      --> ..................................................
CT0008231      --> ..................................................
CT0056098      --> ..................................................
ET0125179      --> ..................................................
CT0054526      --> ..................................................
CT0068904      --> ..................................................
ET0053267      --> ..................................................
CT0092436      --> ..................................................
ET0005502      --> ..................................................
ET0113737      --> ..................................................
ET0116461      --> ..................................................
ET0118090      --> ..................................................
ET0119602      --> ..................................................
ET0120699      --> ..................................................
ET0121223      --> ..................................................
ET0122318      --> ..................................................
ET0123994      --> ..................................................
ET0124335      --> ..................................................
ET0121199      --> ..................................................
ET0125992      --> ..................................................
CT0006125      --> ..................................................
ET0119021      --> ..................................................
ET0133837      --> ..................................................
ET0004961      --> ..................................................
CT0109446      --> ..................................................
CT0071287      --> ..................................................
CT0073084      --> ..................................................
ET0036251      --> ..................................................
ET0014838      --> ..................................................
CT0061816      --> ..................................................
ET0085912      --> ..................................................
ET0100831      --> ..................................................
ET0109943      --> ..................................................
CT0065411      --> GATGATGAAATTACATTATAAATAATTGATGCTTTtaccttttaaatt..
CT0044871      --> GATGATGAAATTACATTATAAATAATTGATGCTTTCCTTTTAAAAAAAA.

               1551   -   1601
RU01473        --> AA
                   ~~
RH03B73        <-- ..
ET0018049      <-- ..
ET0081154      <-- ..
ET0041263      <-- ..
ET0067560      <-- ..
ET0072532      <-- ..
ET0072913      <-- ..
ET0074194      <-- ..
ET0074332      <-- ..
ET0074876      <-- ..
ET0094549      <-- ..
ET0097295      <-- ..
ET0101366      <-- ..
ET0106467      <-- ..
ET0065733      <-- ..
ET0102603      <-- ..
CT0118168      <-- ..
ET0089063      <-- ..
ET0064190      <-- ..
ET0068611      <-- ..
ET0091787      <-- ..
ET0031786      <-- ..
ET0050863      <-- ..
ET0040841      <-- ..
CT0032229      <-- ..
CT0108305      <-- ..
ET0071103      <-- ..
ET0008581      <-- ..
ET0009273      <-- ..
ET0114755      <-- ..
CT0058539      <-- ..
CT0034121      <-- ..
ET0035501      <-- ..
ET0075701      <-- ..
ET0118913      <-- ..
CT0011998      <-- ..
CT0023290      <-- ..
CT0009567      <-- ..
CT0006107      <-- ..
CT0071253      <-- ..
ET0118019      <-- ..
CT0073959      <-- ..
ET0064688      <-- AA
ET0064587      <-- AA
ET0064768      <-- AA
ET0036537      --> ..
CT0136079      --> ..
RH11H6         --> ..
CT0128539      --> ..
CT0137618      --> ..
CT0040042      --> ..
CT0094650      --> ..
CT0009431      --> ..
CT0008231      --> ..
CT0056098      --> ..
ET0125179      --> ..
CT0054526      --> ..
CT0068904      --> ..
ET0053267      --> ..
CT0092436      --> ..
ET0005502      --> ..
ET0113737      --> ..
ET0116461      --> ..
ET0118090      --> ..
ET0119602      --> ..
ET0120699      --> ..
ET0121223      --> ..
ET0122318      --> ..
ET0123994      --> ..
ET0124335      --> ..
ET0121199      --> ..
ET0125992      --> ..
CT0006125      --> ..
ET0119021      --> ..
ET0133837      --> ..
ET0004961      --> ..
CT0109446      --> ..
CT0071287      --> ..
CT0073084      --> ..
ET0036251      --> ..
ET0014838      --> ..
CT0061816      --> ..
ET0085912      --> ..
ET0100831      --> ..
ET0109943      --> ..
CT0065411      --> ..
CT0044871      --> ..