SNPs of unigene RU01528
               1      -     51
RU01528        --> TCGGTTGTGGGAGATTGAGAAGAATGAGTACTGGGGTTACGATCACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- TCGGTTGTGGGAGATTGAGAAGAATGAGTACTGGGGTTACGATCACCAAT
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               51     -    101
RU01528        --> TGCGGTACCGAAGGAAAATCTTCATGGAGTTTTAGTAGGGAGAGAAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- TGCGGTACCGAAGGAAAATCTTCATGGAGTTTTAGTAGGGAGAGAAGTGC
RH32AG331      <-- ......ACCGAAGGAAA-TCTTCATGGAGTTTTAGTAGGGAGAGAAGTGC
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               101    -    151
RU01528        --> TTCCGGATGGGATTCTGTATGCTTCGAGGGATACGCATTATTCGATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- TTCCGGATGGGATTCTGTATGCTTCGAGGGATACGCATTATTCGATATTT
RH32AG331      <-- TTCCGGATGGGATTCTGTATGCTTCGAGGGATACGCATTATTCGATATTT
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> ...........ATTCTGTATGCTTCGAGGGCTACGCATTATTCGATATTT
ET0026088      --> ...........................................GATATTT
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               151    -    201
RU01528        --> AAAGCGGCAAGAATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- AAAGCGGCAAGAATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
RH32AG331      <-- AAAGCGGCAAGAATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
ET0109492      <-- ......................................TGACACTCTGAT
CT0066303      <-- ..........................................ACTCTGAT
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> AAAGCGGCAAGAATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
ET0026088      --> AAAGCGGCAAGAATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
CT0123042      --> ...........AATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
CT0124925      --> ...........AATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
CT0125210      --> ...........AATGTATAGAATGGAATGCGTAAAGGTTGACACTCTGAT
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               201    -    251
RU01528        --> GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- GTCTGGTGAGATTGATTGCGCCAATTTTAGAGCT................  Control
RH32AG331      <-- GTCTGGTGAGATTGATTGCACCGATTTTAGAGCTAAGCTTCTTGCTAACA  WaterDS
ET0109492      <-- GTCTGGTGAGATTGATTGCACCGATTTTAGAGCTAAGCTTCTTGCTAACA  Ethylene
CT0066303      <-- GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA  Control
ET0038472      <-- ..................................................  Ethylene
CT0068052      <-- ..................................................  Control
ET0027487      <-- ..................................................  Ethylene
ET0113949      <-- ..................................................  Ethylene
RH48BQ60       <-- ..................................................  WaterDS
CT0084932      <-- ..................................................  Control
CT0120889      <-- ..................................................  Control
RH29AE162      --> GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA  WaterDS
ET0026088      --> GTCTGGTGAGATTGATTGCACCGATTTTAGAGCTAAGCTTCTTGCTAACA  Ethylene
CT0123042      --> GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA  Control
CT0124925      --> GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA  Control
CT0125210      --> GTCTGGTGAGATTGATTGCGCCGATTTTAGAGCTAAGCTTCTTGCTAACA  Control
CT0014933      --> ......................GATTTTAGAGCTAAGCTTCTTGCTAACA  Control
CT0008430      --> ..................................................  Control
ET0098701      --> ..................................................  Ethylene
CT0027773      --> ..................................................  Control
CT0043735      --> ..................................................  Control
CT0072954      --> ..................................................  Control
ET0116103      --> ..................................................  Ethylene
CT0095058      --> ..................................................  Control
CT0096313      --> ..................................................  Control
ET0091957      --> ..................................................  Ethylene
CT0035285      --> ..................................................  Control
CT0047545      --> ..................................................  Control
CT0051706      --> ..................................................  Control
ET0033437      --> ..................................................  Ethylene
ET0110647      --> ..................................................  Ethylene
CT0019920      --> ..................................................  Control
ET0061795      --> ..................................................  Ethylene
ET0065990      --> ..................................................  Ethylene
ET0094388      --> ..................................................  Ethylene
ET0140947      --> ..................................................  Ethylene
ET0060807      --> ..................................................  Ethylene
ET0100155      --> ..................................................  Ethylene

               251    -    301
RU01528        --> AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
ET0109492      <-- AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
CT0066303      <-- AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> AGGACAAACCAGCTATCATTAATGTTAATATAGAAACAACTGTTAAAGGA
ET0026088      --> AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
CT0123042      --> AGGACAAACCAGCTATCATTAATGTTAACATAGGAACAACTGTTAAAGGA
CT0124925      --> AGGACAAACCAGCTATCATTAATGTTAACATAGGAACAACTGTTAAAGGA
CT0125210      --> AGGACAAACCAGCTATCATTAATGTTAACATAGGAACAACTGTTAAAGGA
CT0014933      --> AGGACAAACCAGCTATCATTAATGTTAATATAGGAACAACTGTTAAAGGA
CT0008430      --> ..................TTAATGTTAATATAGGAACAACTGTTAAAGGA
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               301    -    351
RU01528        --> GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
ET0109492      <-- GCTGTTGACGATCTGGATCTTGTCATAA......................
CT0066303      <-- GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
ET0026088      --> GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
CT0123042      --> GCTGTGGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAATGTGGATT
CT0124925      --> GCTGTGGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAATGTGGATT
CT0125210      --> GCTGTGGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAATGTGGATT
CT0014933      --> GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
CT0008430      --> GCTGTTGACGATCTGGATCTTGTCATAAAAACCCTTGAAGAGTGTGGATT
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               351    -    401
RU01528        --> CAATCGTGATCGGTTCTACATTCACTGCGATGGAGCCTTATTTGGACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- CAATCGTGATCGGTTCTACATTCACTGCGATGGAGCCCTATTTGGACTCA
ET0109492      <-- ..................................................
CT0066303      <-- CAATCGTGATCGGTTCTACATTCACTGCGATGGAGCCTTATT........
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> CAATCGTGATCGGTTCTACATTCACTGCGATGGAGCCTTATTTGGACTCA
ET0026088      --> CAATCGTGATCGGTTTTACATTCACTGCGAg...................
CT0123042      --> CAATCATGATCGGTTCTACATTCACTGCGATGGAGCCTTta.........
CT0124925      --> CAATCATGATCGGTTCTACATTCACTGCGATGGAGCCTTta.........
CT0125210      --> CAATCATGATCGGTTCTACATTCACTGCGATGGAGCCTTta.........
CT0014933      --> CAATCGTGATCGGTTCTACATTCACTGCGAT...................
CT0008430      --> CAATCGTGATCGGTTCTACATTCACTGCGATGGAGCCTTATTTGGACTCA
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               401    -    451
RU01528        --> TGATGCCTTTTGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- TGATGCCTTTTGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATT
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- .....CCTTTTGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATT
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> TGATGCCTTTTGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATT
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> TGATGCCTTTTGTCAAACTTGCACCAAAAGTTTCTTTCAAGAAGCCCATT
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               451    -    501
RU01528        --> GGAAGTGTGAGCGTTTCTGGTCACAAGTTTGTAGG-ATGTCCGATGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- GGAAGTGTGAGCGTTTCTGGTCACAAGTTTGTAGG-ATGTCCGATGCCTT
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- GGAAGTGTGAGCGTTTCTGGTCACAAGTTTGTAGG-ATGTCCGATGCCTT
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> GGAAGTGTGAGCGTTTCTGGTCACAAGTTTGTAGG-ATGTCCGATGCCTT
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> GGAAGTGT..........................................
ET0098701      --> ..............TTCTGGTCACAAGTTTGTAGGGATGTCCGATGCCTT
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               501    -    551
RU01528        --> GTGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- GTGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- GTGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
CT0068052      <-- ............................CATTAATGTCCTTTCAAATAAT
ET0027487      <-- ..............................TTAATGTCCTTTCAAATAAT
ET0113949      <-- ................................AATGTCCTTTCAAATAAT
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> GCGGTGTTCAGATAACAAGGCTGGGGCACATTAATGTCCTTTCAAATAAT
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> GCGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
CT0027773      --> gcGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
CT0043735      --> gcGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
CT0072954      --> gcGGTGTTCAGATAACAAGGCTGGAGCACATTAATGTCCTTTCAAATAAT
ET0116103      --> ............................CATTAATGTCCTTTCAAATAAT
CT0095058      --> ............................................AATAAT
CT0096313      --> ............................................AATAAT
ET0091957      --> .............................................ATAAT
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               551    -    601
RU01528        --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0068052      <-- GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
ET0027487      <-- GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
ET0113949      <-- GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAGTG
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0027773      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0043735      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0072954      --> GTAGAATACCTTGCTTCAAGGGGATGCGACAATCATGGGAAGCAGGAATG
ET0116103      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0095058      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0096313      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
ET0091957      --> GTAGAATACCTTGCTTCAAGGG-ATGCGACAATCATGGGAAGCAGGAATG
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               601    -    651
RU01528        --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- GTCATGCTC.........................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0068052      <-- GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
ET0027487      <-- GTCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
ET0113949      <-- GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
RH48BQ60       <-- ........................ACACCCTCAACAGAAAAGGTTACAAA
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> GCCATGCTC.........................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0027773      --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0043735      --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0072954      --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
ET0116103      --> GCCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0095058      --> GTCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0096313      --> GTCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
ET0091957      --> GTCATGCTCCTATTTTCCTATGGTACACCCTCAACAGAAAAGGTTACAAA
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               651    -    701
RU01528        --> GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- GGGTTCCAAAAAGAAGT.................................
CT0068052      <-- GGGTTCC...........................................
ET0027487      <-- GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
ET0113949      <-- GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
RH48BQ60       <-- GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
CT0084932      <-- ..........................................TACTT-GA
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
CT0027773      --> GGGTTacc..........................................
CT0043735      --> GGGTTacc..........................................
CT0072954      --> GGGgttcc..........................................
ET0116103      --> GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
CT0095058      --> GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
CT0096313      --> GGGTTCCAAAAAGAAGTTCAGAAGTGTCTTCGAAATGCTCACTACTT-GA
ET0091957      --> GGGTTCC...........................................
CT0035285      --> ..........................................TACTT-GA
CT0047545      --> ..........................................TACTT-GA
CT0051706      --> ..........................................TACTTAGA
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               701    -    751
RU01528        --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
ET0113949      <-- AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTTAGC
RH48BQ60       <-- AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTTAGC
CT0084932      <-- AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTTAGC
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> AGGACCGTCTT.......................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
CT0095058      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
CT0096313      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
ET0091957      --> ..................................................
CT0035285      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
CT0047545      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
CT0051706      --> AGGACCGTCTTCGTGATGCTGGGATCAGTGCCATGCTGAATGAGCTAAGT
ET0033437      --> ...................TGGGATCAGTGCCATGCTGAATGAGCTTAGC
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               751    -    801
RU01528        --> AGCACGGTTGTATTTGAGCGGCCTCAAGATGAGGAGTTTGTTCGTAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- AGCACGGTTGTATTTGAG................................
ET0113949      <-- AGCACAGTTGTATTTGAGCG..............................
RH48BQ60       <-- AGCACAGTTGTATTTGAGCGTCCTCAAGATGAGGAGTTTGTTCGTAGGTG
CT0084932      <-- AGCACAGTTGTATTTGAGCGTCCTCAAGATGAGGAGTTTGTTCGTAGGTG
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> AGCACGGTTGTATTTGAGCG..............................
CT0095058      --> AGCACGGTTGTATTTGAGAGGCCTCAAG......................
CT0096313      --> AGCACGGTTGTATTTGAGAGGCCTCAAGA.....................
ET0091957      --> ..................................................
CT0035285      --> AGCACGGTTGTATTTGAGCGGCCTCAAGATGAGGAGTTTGTTCGTAGGTG
CT0047545      --> AGCACGGTTGTATTTGAGCGGCCTCAAGATGAGGAGTTTGTTCGTAGGTG
CT0051706      --> AGCACGGTTGTATTTGAGCGGCCTCAAGATGAGGAGTTTGTTCGTAGGTG
ET0033437      --> AGCACAGTTGTATTTGAGCGTCCTCAAGATGAGGAGTTTGTTCGTAGGTG
ET0110647      --> .............................TGAGGAGTTTGTTCGTAGGTG
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               801    -    851
RU01528        --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
CT0084932      <-- GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
CT0047545      --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
CT0051706      --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
ET0033437      --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
ET0110647      --> GCAGTTGGCTTGCCAAGGAAACATTGCACATGTTGTGGTGATGCCAAGTG
CT0019920      --> ..................................................
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               851    -    901
RU01528        --> TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
CT0084932      <-- TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
CT0120889      <-- .........ATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
CT0047545      --> TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
CT0051706      --> TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
ET0033437      --> TGAACATTGATAAATTGGA...............................
ET0110647      --> TGAACATTGATAAATTGGATGATTTCTTAAACGAACTAGTTGAAAAACGC
CT0019920      --> ....................atTTTCTTAAACGAACTAGTTGAAAAACGC
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               901    -    951
RU01528        --> TCAACTTGGTACAAGGATGAGAAAGTTCAGCCTCCTTGTATTGCAGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- TCAACTTGGT........................................
CT0084932      <-- TCAACTTGGTACAAGG..................................
CT0120889      <-- TCAACTTGGTACAAGGATGAGAAAGTTCAGCCTCCTTGTATTGCAGCTGA
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> TCAACT............................................
CT0047545      --> TCAACT............................................
CT0051706      --> TCAAC.............................................
ET0033437      --> ..................................................
ET0110647      --> TCAACTTGGTACAAGGATGAGAAAGTTCAGCCTCCTTGTATTGCAGCTGA
CT0019920      --> TCAACTTGGTACAAGGATGAGAAAGTTCAGCCTCCTTGTATTGCAGCTGA
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               951    -   1001
RU01528        --> TGTAGGGACTCAGAATTGTCTTTGCGGGAAGCACAAGTGATTCATTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- TGTAGGGACTCAGAATTGTCTTTGCGGGAAGCACAAGTGATTCATTTATT
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> TGTAGGGACTCAGAATTGTCTTTGCGGGAAGCACAAGTGATTCATTTATT
CT0019920      --> TGTAGGGACTCAGAATTGTCTTTGCGGGAAGCACAAGTGATTCATTTATT
ET0061795      --> ..................................................
ET0065990      --> ..................................................
ET0094388      --> ..................................................
ET0140947      --> ..................................................
ET0060807      --> ..................................................
ET0100155      --> ..................................................

               1001   -   1051
RU01528        --> TTAGCAGTGTGCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- TTAGCAGTGTGCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> TTAGCACTGTGCTTTTG.................................
CT0019920      --> TTAGCAGTGTGCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0061795      --> ..........GCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0065990      --> ..........GCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0094388      --> .........gtCTGTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0140947      --> .....ctgtgatTGTGGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0060807      --> ........gcttgtTTGTTGTATTGTAGTACTTTGTTCTGTTGAACTACT
ET0100155      --> .gttctttgttttgtttgttatTTGTAGTACTTTGTTCTGTTGAACTACT

               1051   -   1101
RU01528        --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTa
ET0061795      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
ET0065990      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
ET0094388      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
ET0140947      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
ET0060807      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC
ET0100155      --> GCATTTTGTAGTTCCTAGTATTGTTTCAGAGGGTGTTTCTCCCTTTGTTC

               1101   -   1151
RU01528        --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- TCATG.............................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ct................................................
ET0061795      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
ET0065990      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
ET0094388      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
ET0140947      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
ET0060807      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA
ET0100155      --> TCATGATGCCTCCCTAGTCTTCTGATTTCTGCTCTCTTAGAAACTATCAA

               1151   -   1201
RU01528        --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- ..................................................
RH32AG331      <-- ..................................................
ET0109492      <-- ..................................................
CT0066303      <-- ..................................................
ET0038472      <-- ..................................................
CT0068052      <-- ..................................................
ET0027487      <-- ..................................................
ET0113949      <-- ..................................................
RH48BQ60       <-- ..................................................
CT0084932      <-- ..................................................
CT0120889      <-- ..................................................
RH29AE162      --> ..................................................
ET0026088      --> ..................................................
CT0123042      --> ..................................................
CT0124925      --> ..................................................
CT0125210      --> ..................................................
CT0014933      --> ..................................................
CT0008430      --> ..................................................
ET0098701      --> ..................................................
CT0027773      --> ..................................................
CT0043735      --> ..................................................
CT0072954      --> ..................................................
ET0116103      --> ..................................................
CT0095058      --> ..................................................
CT0096313      --> ..................................................
ET0091957      --> ..................................................
CT0035285      --> ..................................................
CT0047545      --> ..................................................
CT0051706      --> ..................................................
ET0033437      --> ..................................................
ET0110647      --> ..................................................
CT0019920      --> ..................................................
ET0061795      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT
ET0065990      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT
ET0094388      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT
ET0140947      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCATACACTT
ET0060807      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT
ET0100155      --> GAATCTTGCTGTACCGGGGGAGTGCTTTACAGTGGTTTAACCAT-CACTT

               1201   -   1251
RU01528        --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTACAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0125982      <-- .........................................
RH32AG331      <-- .........................................
ET0109492      <-- .........................................
CT0066303      <-- .........................................
ET0038472      <-- .........................................
CT0068052      <-- .........................................
ET0027487      <-- .........................................
ET0113949      <-- .........................................
RH48BQ60       <-- .........................................
CT0084932      <-- .........................................
CT0120889      <-- .........................................
RH29AE162      --> .........................................
ET0026088      --> .........................................
CT0123042      --> .........................................
CT0124925      --> .........................................
CT0125210      --> .........................................
CT0014933      --> .........................................
CT0008430      --> .........................................
ET0098701      --> .........................................
CT0027773      --> .........................................
CT0043735      --> .........................................
CT0072954      --> .........................................
ET0116103      --> .........................................
CT0095058      --> .........................................
CT0096313      --> .........................................
ET0091957      --> .........................................
CT0035285      --> .........................................
CT0047545      --> .........................................
CT0051706      --> .........................................
ET0033437      --> .........................................
ET0110647      --> .........................................
CT0019920      --> .........................................
ET0061795      --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTACAAAAAAAAA
ET0065990      --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTACAAAAAAAAA
ET0094388      --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTAC.........
ET0140947      --> GTag.....................................
ET0060807      --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTACAAAAAAA..
ET0100155      --> GTTGCGCGTAATGCAAGATTTTGGTTCAGTAC.........