SNPs of unigene RU01577
               1      -     51
RU01577        --> TTTTTTGTGGAAGAATGAGCAACTGTAAATTTTATTCAATTCCTTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> TTTTTTGTGGAAGAATGAGCAACTGTAAATTTTATTCAATTCCTTCAGTT
ET0104398      --> ......gcGGAAGAATGAGCAACTGTAAATTTTATTCAATTCCTTCAGTT
CT0010491      --> .........ttttaaaagaacagatgcAATTTTATTCAATTCCTTCAGTT
CT0017198      --> ............gaaaagaacagatgcAATTTTATTCAATTCCTTCAGTT
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               51     -    101
RU01577        --> TCTCAAAGGAAGTGCCTTACATGATCGATAATACAGGACCATAGTCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> TCTCAAAGGAAGTGCCTTACATGATCGATAATACAGGACCATAGTCTCAG
ET0104398      --> TCTCAAAGGAAGTGCCTTACATGATCGATAATACAGGACCATAGTCTCAG
CT0010491      --> TCTCAAAGGAAGTGCCTTACATGATCGATAATACAGGACCATAGTCTCAG
CT0017198      --> TCTCAAAGGAAGTGCCTTACATGATCGATAATACAGGACCATAGTCTCAG
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               101    -    151
RU01577        --> ACTAGGGATAAACAAGCATAGTTATATACAGAGTTACAAGATAGCAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..............................GAGTTACAAGATAGCAATGT
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ACTAGGGATAAACAAGCATAGTTATATACAGAGTTACAAGATAGCAATGT
ET0104398      --> ACTAGGGATAAACAAGCATAGTTATATACAGAGTTACAAGATAGCAATGT
CT0010491      --> ACTAGGGATAAACAAGCATAGTTATATACAGAGTTACAAGATAGCAATGT
CT0017198      --> ACTAGGGATAAACAAGCATAGTTATATACAGAGTTACAAGATAGCAATGT
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               151    -    201
RU01577        --> CCCGTTGCAGAGACCTCAAACTACCAAACAGACAACGTGAAACAAAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- CCCTTTGCAGAGACCTCAAACTACCAAACAGACAACGTGAAACAAAATCT  Ethylene
ET0008912      <-- ..................................................  Ethylene
ET0077200      <-- ..................................................  Ethylene
ET0097920      <-- ..................................................  Ethylene
ET0111807      <-- ..................................................  Ethylene
CT0041044      <-- ..................................................  Control
CT0051319      <-- ..................................................  Control
CT0105726      <-- ..................................................  Control
CT0030997      <-- ..................................................  Control
CT0043705      <-- ..................................................  Control
ET0030740      <-- ..................................................  Ethylene
CT0014594      <-- ..................................................  Control
CT0024881      <-- ..................................................  Control
CT0035316      <-- ..................................................  Control
ET0009181      <-- ..................................................  Ethylene
CT0112606      <-- ..................................................  Control
RH17P30        <-- ..................................................  WaterDS
CT0019178      <-- ..................................................  Control
ET0043969      <-- ..................................................  Ethylene
ET0147134      <-- ..................................................  Ethylene
ET0147669      <-- ..................................................  Ethylene
ET0147058      <-- ..................................................  Ethylene
ET0142413      <-- ..................................................  Ethylene
ET0085407      --> CCCTTTGCAGAGACCTCAAACTACCAAACAGACAACGTGAAACAAAATCT  Ethylene
ET0104398      --> CCCTTTGCAGAGACCTCAAACTACCAAACAGACAACGTGAAACAAAATCT  Ethylene
CT0010491      --> CCCGTTGCAGAGA.....................................  Control
CT0017198      --> CCCGTTGCAGAGACCTCAAACTACCAAg......................  Control
CT0128869      --> ..................................................  Control
RH35AG102      --> ..................................................  WaterDS
CT0017817      --> ..................................................  Control
RH08E60        --> ..................................................  WaterDS
ET0028732      --> ..................................................  Ethylene
ET0057845      --> ..................................................  Ethylene

               201    -    251
RU01577        --> TGGTAAAACCAATATCAGGACTAACACCTTATATTTTCT-CAAA-T-GCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- TGGTAAAACCAATATCAGGACTAACACCTTATATTTTCT-CAAA-T-GCC
ET0008912      <-- ............TATCAGGACTAACACCTTATATTTTCT-CAAA-T-GCC
ET0077200      <-- ..............................ATATTTTCT-CAAAAT-GCC
ET0097920      <-- ................................ATTTTCT-CAAA-T-GCC
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> TGGTAAAACCAATATCAGGACTAACACCTTATATTTTCTTCAAA-TAGCC
ET0104398      --> TGGTAAAACCAATATCAGGACTAACACCTTATATTTTCT-CAAA-T-GCC
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               251    -    301
RU01577        --> CACAAAGAAACATTACATTGTTGAGGAATTAAAGCCTTTTGACATTTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- CACAAAGAAACATTACATTGTTGAGGAATTAAAGCCTTTTGACATTTACC
ET0008912      <-- CACAAAGAAACATTACATTGTTGAGGAATTAAAGCCTTTTGACATTTACC
ET0077200      <-- CACAAAGAAACATTACATTGTTGAGGAATTAAAGCCTTTTGACATTTACC
ET0097920      <-- CACAAAGAAACATTACATTGTTGAGGAATTAAAGCCTTTTGACATTTACC
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> CACcaaa...........................................
ET0104398      --> CACAAAGAAA........................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               301    -    351
RU01577        --> TAGGTAAAA-GGGTTGGAAGAAGCAGCTTCTGGATGGTAGTGAAGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- TAGGTAAAA-GGGTTGGAAGAAGCAGCTTCTGGATGGTAGTGAAGCATCT
ET0008912      <-- TAGGTAAAA-GGGTCGGAAGAAGCAGCTTCTGGATGGTAGTGAAGCATCT
ET0077200      <-- TAGGTAAAAAGGGTTGGAAGAAGCAGCTTCTGGATGGTAGTGAAGCATCT
ET0097920      <-- TAGGTAAAA-GGGTTGGAAGAAGCAGCTTCTGGATGGTAGTGAAGCATCT
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               351    -    401
RU01577        --> CGTTCCACATCATCTCCCGAATCATATGTTCGCCTAAACTCTCATCTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- CGTTCCACATCATCTCCCGAATCA..........................
ET0008912      <-- CGTTC.............................................
ET0077200      <-- CGTTCCACATCATCTCCCGAATCATATGTTCGCCTAAACTCTCATCTATG
ET0097920      <-- CGTTCCACATCATCTCCCGAATCATATGTTCGCCTAAACTCTCATCTATG
ET0111807      <-- ...............................................ATG
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               401    -    451
RU01577        --> TCGAGGTTGATCGGAACATGAACAAGAGGATTGCTTCTGGGATCATATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- TCGAGGTTGATCGGAACATGAACAAGAGGATTGCTTCTG...........
ET0097920      <-- TCGAGGTTGATCGGAACATGAACAAGAGGATTGCTTCTG...........
ET0111807      <-- TCGAGGTTGATCGGAACATGAACAAGAGGATTGCTTCTGGGATCATATAG
CT0041044      <-- ..............................................ATAG
CT0051319      <-- ..............................................ATAG
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               451    -    501
RU01577        --> CCCTGACATGTAAGGATGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- CCCTGACATGTAAGGATGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
CT0041044      <-- CCCTGACATGTAAGGATGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
CT0051319      <-- CCCTGACATGTAAGGATGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
CT0105726      <-- CCCTGACATGTAAGGATGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ................TGTTGGAGTGCTTCCGAGACGGTGATTCTCTTAG
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               501    -    551
RU01577        --> TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
CT0041044      <-- TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
CT0051319      <-- TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
CT0105726      <-- TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
CT0030997      <-- ..............................AATCTATAGCCAAAGGATCG
CT0043705      <-- ..............................AATCTATAGCCAAAGGATCG
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> TTGGATCAAACACAAGCATCCTTCGCAACAAATCTATAGCCAAAGGATCG
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               551    -    601
RU01577        --> GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- GCTTGAGGGTACAGACGGGAG.............................
CT0041044      <-- GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
CT0051319      <-- GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
CT0105726      <-- GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
CT0030997      <-- GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
CT0043705      <-- GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> GCTTGAGGGTACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
RH35AG102      --> ..........ACAGACGGGAGAAATGTGTCCCCCTTGAATAGGGCAGTGA
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               601    -    651
RU01577        --> TTTGATGAACTTCCTGGCTTTCTGATTGTCAATGAATGCGAGATCAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- CTTGATGAACTTCCTGGCTTTCTG..........................
CT0051319      <-- CTTGATGAACTTCCTGGCTTTCTG..........................
CT0105726      <-- CTTGATGAACTTCCTGGCTTTCTGATTGTCAATGAATGCGAGATCAGGTT
CT0030997      <-- TTTGATGAACTTCCTGGCTTTCTGATTGTCAATGAATGCGAGATCAGGTT
CT0043705      <-- TTTGATGAACTTCCTGGCTTTCTGATTGTCAATGAATGCGAGATCAGGTT
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> CTTGATGAAC........................................
RH35AG102      --> CTTGATGAACTTCCTGGCTTTCTGATTGTCAATGAATGCGAGATCAGGTT
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               651    -    701
RU01577        --> CATGCTGGCTACCAAGAACATTGATAATTAGTTTTAGTTGGTTGAGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- CATGCTGGCTACCAAGAgagacgcactc......................
CT0030997      <-- CATGCTGGCTACCAAGAACATTGATAATTAGTTTTAGTTGGTT.......
CT0043705      <-- CATGCTGGCTACCAAGAACATTGATAATTAGTTTTAGTTGGTT.......
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> CATGCTGGCTACCAAGAACATTGATAATTAGTTTTAGTTGGTTGAGGCAT
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               701    -    751
RU01577        --> TCAGTTCCGGGAAAGATTGGCTTTCGGCCAAGAATCTCAGCAAAGATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ............................................aATACA
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> TCAGTTCCGGGAAAGATTGGCTTTCGGCCAAGAATCTCAGCAAAGATACA
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               751    -    801
RU01577        --> TCCTACCGACCAGACGTCAATGGATGTTCCGTAATTGTCACAGCACAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- TCCTACCGACCAGACGTCAATGGATGTTCCGTAATTGTCACAGCACAGTA
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> TCCTACCGACCAGACGTCAATGGATGTTCCGTAATTGTCACAGCACAGTA
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               801    -    851
RU01577        --> GCAGCTCTGGTGCACGATACCAGCGAGTGACAACATACTCTGTCATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- GCAGCTCTGGTGCACGATACCAGCGAGTGACAACATACTCTGTCATGAAC
CT0014594      <-- ...........................................CATGAAC
CT0024881      <-- ...........................................CATGAAC
CT0035316      <-- ............................................ATGAAC
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> GCAGCTCTGGTGCACGATACCAGCGAGTGACAACATACTCTGTCATGAAC
CT0017817      --> ..................................................
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               851    -    901
RU01577        --> TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
CT0014594      <-- TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
CT0024881      <-- TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
CT0035316      <-- TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> TGGTCATTACCTCTGCTGGTTCGGGCCAACCCAAAATCACATATCTTTAA
CT0017817      --> ...............................CAAAATCACATATCTTTAA
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               901    -    951
RU01577        --> GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
CT0014594      <-- GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
CT0024881      <-- GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
CT0035316      <-- GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
ET0009181      <-- .........................................tcctgtgat
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
CT0017817      --> GTCGCAGTTAGCATTGATGAGCAGGTTCCCAGGCTTCAAGTCTCGGTGAA
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               951    -   1001
RU01577        --> GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAAGCAGCTGAAATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- GAATGTTTGCTGAATG..................................
CT0014594      <-- GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAA..............
CT0024881      <-- GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAA..............
CT0035316      <-- GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAAa.............
ET0009181      <-- tgtgGTTTGCTGAATGAAGATACTTGAGCCCCCTAAGCAGCTGAAATAGA
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAAGCAGCTGAAATAGA
CT0017817      --> GAATGTTTGCTGAATGAAGATACTTGAGCCCCCTAAGCAGCTGAAATAGA
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1001   -   1051
RU01577        --> AAGTATTTGCAATGGTCAGTGGAAAGTGGCTGTGAAGACTTTATAATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- AAGTATTTGCAATGGTCAGTGGAAAGTGGCTGTGAAGACTTTATAATTTG
CT0112606      <-- ..................GTGGAAAGTGGCTGTGAAGACTTTATAATTTG
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> AAGTATTTGCAATGGTCAGTGGAAAGTGGCTGTGAAGACTTTATAATTTG
CT0017817      --> AAGTATTTGCAATCGTCAGTGGAAAGTGGCTGTGAAGACTTT........
RH08E60        --> ..................................................
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1051   -   1101
RU01577        --> GTGAAGATCAGTATCCATGAGCTCGTACACAAAATACACGTCCTTGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- GTGAAGATCAGTATCCATGAGCTCGTACACAAAATACACGTCCTTGAAAC
CT0112606      <-- GTGAAGATCAGTATCCATGAGCTCGTACACAAAATACACGTCCTTGAAAC
RH17P30        <-- ..........................ACACAAAATACACGCCCTTGAAAC
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> GTGAAGATCAGTATCCATGAGCTCGTAacc....................
CT0017817      --> ..................................................
RH08E60        --> ..........................ACACAAAATACACGTCCTTGAAAC
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1101   -   1151
RU01577        --> TTGTCCTGTGGATAGGCATCATAACATCCTTCAAAGCAATCACATTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- TTGTCCTGTGGATAGGCATCATAACATCCTTCAAAGCAATCACATTCTCG
RH17P30        <-- TTGTCCTGTGGATAGGCATCATAACATCCTTCAAAGCAATCACATTCTCG
CT0019178      <-- ...............................tAAAGCAATCACATTCTCG
ET0043969      <-- ..............................ctAAAGCAATCACATTCTCG
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> TTGTCCTGTGGATAGGCATCATAACATCCTTCAAAGCAATCACATTCTCG
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1151   -   1201
RU01577        --> TGCTGGATATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- TGCTGGATATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCATC
RH17P30        <-- TGCTGGATATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCATC
CT0019178      <-- TGCTGGATATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCATC
ET0043969      <-- TGCTGGA-ATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCATC
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> TGCTGGATATTTCTAAGTAGCTTCAACTCCCTCAGTGTCCTCAATGCGTC
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1201   -   1251
RU01577        --> AATGCGGTTCTCAAACACGTTATGGATCTTCTTGATTGCAACTTTCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- AATGCGGTTCTCAAACACGTTATGG.........................
RH17P30        <-- AATGCGGTTCTCAAACACGTTATTGATCTTCTTGATTGCAACTTTCTCAT
CT0019178      <-- AATGCGGTTCTCAAACACGTTATTGATCTTCTTGATTGCAACTTTCTCAT
ET0043969      <-- AATGCGGTTCTCAAACACGTTATTGATCTTCTTGATTGCAACTTTCTCAT
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> AATGCGGTTCTCAAACACGTTATGGATCTTCTTGATTGCAACTTTCTCAT
ET0028732      --> ...................................TTGCAACTTTCTCAT
ET0057845      --> ..................................................

               1251   -   1301
RU01577        --> TCGTTTCCCTGTTGATGGACGAGCAGACTACACCATATGCTCCTCTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- TCGTTTCCCTGTTGATGGAC..............................
CT0019178      <-- TCGTTTCCCTGTTGATGGACGAGCAGACTACACCATATGCTCCTCTCCCT
ET0043969      <-- TCGTTTCCCTGTTGATGGACGAGCAGACTACACCATATGCTCCTCTCCCT
ET0147134      <-- ..........................ACTACACCATATGCTCCTCTCCCT
ET0147669      <-- ..........................ACTACACCATATGCTCCTCTCCCT
ET0147058      <-- .............................ACACCATATGCTCCTCTCCCT
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> TCGTTTCCCTGTTGATGGACGAGCAGACTACACCATATGCTCCTCTCCCT
ET0028732      --> TCGTTTCCCTGTTGATGGACGAGCAGACTACACCATATGCTCCTCTCCCT
ET0057845      --> .............................ACACCATATGCTCCTCTCCCT

               1301   -   1351
RU01577        --> ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0043969      <-- ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0147134      <-- ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0147669      <-- ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0147058      <-- ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0028732      --> ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA
ET0057845      --> ATGGGTTTGATCGGAACATACTTGGAATCAACCTCGAACAACGTTTGCCA

               1351   -   1401
RU01577        --> CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- CATT-GAGTAAT......................................
ET0043969      <-- CATTCGAGTAATAattt.................................
ET0147134      <-- CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
ET0147669      <-- CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
ET0147058      <-- CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
ET0142413      <-- ..................................................
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
ET0028732      --> CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC
ET0057845      --> CATT-GAGTAATATTGCTTCCCCCGTTGCCTGATTCCATTCGGAGGCTCC

               1401   -   1451
RU01577        --> ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
ET0147669      <-- ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
ET0147058      <-- ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
ET0142413      <-- ................................ACAAACATTAAAACCAAG
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
ET0028732      --> ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G
ET0057845      --> ACTAAAGTTGCCATTTCCCTCAATAACTGGCAACAAACATTAAAACCA-G

               1451   -   1501
RU01577        --> CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
ET0147669      <-- CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
ET0147058      <-- CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
ET0142413      <-- CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT
ET0028732      --> CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATA..........
ET0057845      --> CAAAGATCCTACAAACACGTAGATCGTTCCTTATCCAATATAAATCACTT

               1501   -   1551
RU01577        --> CAAATATCACGGTGATCGGATCACTCGATCCTTATTT-CTTCAAAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- CAAATATCACGGTGATCGGATCACTCGATCCTTATTT-CTTCAAAGAGAT
ET0147669      <-- CAAATATCACGGTGATCGGATCACTCGATCCTTATTT-CTTCAAAGAGAT
ET0147058      <-- CAAATATCACGGTGATCGGATCACTCGATCCTTATTT-CTTCAAAGAGAT
ET0142413      <-- CAAATATCACGGTGATCGGATCACTCGATCCTTATTTTCTTCAAAGAGAT
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> CAAATATCACGGTGATCGGATCACTCGATCCTTATTT-CTTCAAAGAGAT
ET0028732      --> ..................................................
ET0057845      --> CAAATATCACAGTGATCGGATCACTCGAT.....................

               1551   -   1601
RU01577        --> CTTAGCGAGACAGAGCAGAGAATATAGATAGAGAGAAGGGTTGAAGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- CTTAGCGAGACAGAGCAGAGAATATAGATAGAGAGAAGG...........
ET0147669      <-- CTTAGCGAGACAGAGCAGAGAATATAGATAGAGAGAAGG...........
ET0147058      <-- CTTAGCGAGACAGAGCAGAGAATATAGATAG...................
ET0142413      <-- CTTAGCGAGACAGAGCAGAGAATATAGATAGAGAGAAGGGTTGAAGATAG
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> CTTAGCGAGACAGAGCAGAGAATATAGATAGAGAGAAGGGTTGAAGATAG
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1601   -   1651
RU01577        --> TTATTTAGATAAAGAATGGGGTTTTGAGGGG-AAGGAATGGGGAAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0112495      <-- ..................................................
ET0008912      <-- ..................................................
ET0077200      <-- ..................................................
ET0097920      <-- ..................................................
ET0111807      <-- ..................................................
CT0041044      <-- ..................................................
CT0051319      <-- ..................................................
CT0105726      <-- ..................................................
CT0030997      <-- ..................................................
CT0043705      <-- ..................................................
ET0030740      <-- ..................................................
CT0014594      <-- ..................................................
CT0024881      <-- ..................................................
CT0035316      <-- ..................................................
ET0009181      <-- ..................................................
CT0112606      <-- ..................................................
RH17P30        <-- ..................................................
CT0019178      <-- ..................................................
ET0043969      <-- ..................................................
ET0147134      <-- ..................................................
ET0147669      <-- ..................................................
ET0147058      <-- ..................................................
ET0142413      <-- TTATTTAGATAAAGAATGGGGTTTTGAGGGGGAAGGAATGGGGAAGAGGA
ET0085407      --> ..................................................
ET0104398      --> ..................................................
CT0010491      --> ..................................................
CT0017198      --> ..................................................
CT0128869      --> ..................................................
RH35AG102      --> ..................................................
CT0017817      --> ..................................................
RH08E60        --> TTATTTAGATAAAGAATGGGGTTTTGAGGGG-AAGGAATGGGGAAGAGGA
ET0028732      --> ..................................................
ET0057845      --> ..................................................

               1651   -   1701
RU01577        --> TGAGAGTA
                   ~~~~~~~~
ET0112495      <-- ........
ET0008912      <-- ........
ET0077200      <-- ........
ET0097920      <-- ........
ET0111807      <-- ........
CT0041044      <-- ........
CT0051319      <-- ........
CT0105726      <-- ........
CT0030997      <-- ........
CT0043705      <-- ........
ET0030740      <-- ........
CT0014594      <-- ........
CT0024881      <-- ........
CT0035316      <-- ........
ET0009181      <-- ........
CT0112606      <-- ........
RH17P30        <-- ........
CT0019178      <-- ........
ET0043969      <-- ........
ET0147134      <-- ........
ET0147669      <-- ........
ET0147058      <-- ........
ET0142413      <-- TGAGAGTA
ET0085407      --> ........
ET0104398      --> ........
CT0010491      --> ........
CT0017198      --> ........
CT0128869      --> ........
RH35AG102      --> ........
CT0017817      --> ........
RH08E60        --> TGAGAGT.
ET0028732      --> ........
ET0057845      --> ........