1 - 51
RU01609 --> GTATATCAAAATTGATCTTGGGTATAATAGAAGTTGGGGTGGTGATATGC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- GTATATCAAAATAGATCTTGGGTATAATAGAAGTTGGGGTGGTGATATGC
CT0067245 <-- ...............TCTTGGGTATAATAGAAGTTGGGGTGGTGATATGC
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> .......AAAAATGATCTTGGGTATAATAGAAGTTGGGGTGGTGATATGC
CT0095832 --> ........................................GGTGATATGC
CT0097004 --> ........................................GGTGATATGC
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
51 - 101
RU01609 --> AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
CT0067245 <-- AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
CT0095832 --> AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
CT0097004 --> AAGAGTATGATGAGGATGTTGTGGATGATTCTTGTGATAATGTAAATGTA
ET0061519 --> ........................................TGTAAATGTA
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
101 - 151
RU01609 --> GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
CT0067245 <-- GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
CT0095832 --> GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
CT0097004 --> GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCCGGGAA
ET0061519 --> GATATTTATGGTGGAAGCATTAAGCAGATTTCAGATAGATGCCCGGGGAA
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
151 - 201
RU01609 --> TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
CT0067245 <-- TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
CT0101192 <-- ......................................TTCAGAAAGACA
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
CT0095832 --> TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
CT0097004 --> TCTGGTTAACAATGGCGGTTCCAGTCCCATAGTTCAGTTTCAGAAAGACA
ET0061519 --> TCTGGTTAACAATGGCGGTTCCAGTCCCATAATTCAGTTTCAGAAAGACA
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
201 - 251
RU01609 --> TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAA.............
CT0067245 <-- TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAA.............
CT0101192 <-- TTGCTTGGGAGTG-AAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCA
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAAGACGATTCA....
CT0095832 --> TTGCTTGGGA-TGGAAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCA
CT0097004 --> TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCA
ET0061519 --> TTGCTTGGGA-TG-AAAAGGGAGATCAGGAGGTCCAAGACGATTCATGCA
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
251 - 301
RU01609 --> CTTCTTTTGAGGCAGGGGCTAGCTCCCAAGATAATCAGCTGAGGTCTGAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- CTTCTTTTGAGGCAGGGGCTAGCTCCCAAGATAATCAGCTGAGGTCTGAA
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> CTTCctt...........................................
CT0097004 --> CTTCctt...........................................
ET0061519 --> CTTCTTTTGAGGCAGGGGCTAGCTCCCAAGATAATCAGCTGAGGTCTGAA
CT0000465 --> .................................ATCAGCTGAGGTCTGAA
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
301 - 351
RU01609 --> AATGGAGATCATTGGGAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- AATGGAGATCATTGGGAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGG
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> AATGGAGATCATTGGGAAGTTGGTTGTTT.....................
CT0000465 --> AATGGAGATCATTGGGAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGG
ET0134014 --> ..............GGAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGG
ET0139143 --> ............aggaAAGTTGGTTGTTTCAATGGGACTAGCAAGCTAGG
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
351 - 401
RU01609 --> TGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGATGCTG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- .................................................. Control
CT0067245 <-- .................................................. Control
CT0101192 <-- TGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGATGCTG Control
CT0030349 <-- .................................................. Control
CT0123367 <-- .................................................. Control
ET0052597 <-- .................................................. Ethylene
ET0050067 --> .................................................. Ethylene
CT0095832 --> .................................................. Control
CT0097004 --> .................................................. Control
ET0061519 --> .................................................. Ethylene
CT0000465 --> TGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGATGCTG Control
ET0134014 --> TGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGACGCTG Ethylene
ET0139143 --> TGACCATGAATATGTTTTGGAGCCTTGTGATGCTAAAGTTTGGGACGCTG Ethylene
CT0067701 --> .................................................. Control
CT0094900 --> .................................................. Control
CT0135604 --> .................................................. Control
401 - 451
RU01609 --> GGTATTCTACGTGCCGAAAAAA-TAAGGTTGACTTTTTGCCAACTTGCAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- GGTATTCTACGTGCCGAAAAAA-T..........................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> GGTATTCTACGTGCCGAAAAA.............................
ET0134014 --> GGTATTCTACGTGCCGAAAAAA-TAAGGTTGACTTTTTGCCAACTTGCAA
ET0139143 --> GGTATTCTACGTGCCGAAAAAAATAAGGTTGACTTTTTGCCAACTTGCAA
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ..................................................
451 - 501
RU01609 --> TATGATTGAAGAGGTTTTTGGAAAA-GATTCTTGGAATAACTACAAAGCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> TATGATTGAAGAGGTTTTTGGAAAA-GATTCTTGGAATAACTACAAAGCA
ET0139143 --> TATGATTGAAGAGGTTTTTGGAAAAAGATTCTTGGAATAACTACAAAGCA
CT0067701 --> ......TGAAGAGGTTTTTGGAAAA-GATTCTTGGAATAACTACAAAGCA
CT0094900 --> .........................................TACAAAGCA
CT0135604 --> ..................................................
501 - 551
RU01609 --> AGGG-ATGGTAAGAACTTGAGTTAGTGTTGCGTGTCCTTATCAAGATGGT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> AGGG-ATGGTAAGAACTTGAGTTAGTGTTGCGTGTCCTTATCAAGATGGT
ET0139143 --> AGGGGATGGTAAGAACTTGAGTTAGTGTTGCGTGTCCTTATCAAGATGGT
CT0067701 --> AGGG-ATGGTAAGAACTTGAGTTAGTGTTGCGTGTCCTTATCAAGATGGT
CT0094900 --> AGGG-ATGGTAAGAACTTGAGTTAGTGTTGCGTGTCCTTATCAAGATGGT
CT0135604 --> ..................................................
551 - 601
RU01609 --> TGGAAAGCAGCATTGAGGTGTTCATATTCCGTGAACCATCCGAAAGTTTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> TGGA..............................................
ET0139143 --> TGGA..............................................
CT0067701 --> TGGAAAGCAGCATTGAGGTGTTCATATTCCGTGAACCATCCGAAAGTTTT
CT0094900 --> TGGAAAGCAGCATTGAGGTGTTCATATTCCGTGAACCATCCGAAAGTTTT
CT0135604 --> ..................................................
601 - 651
RU01609 --> TCC-CAGAATTTTT-ATTTTTTATTTTTAATATTTTAGGTTAGTTGAGTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> TCC-CAGAATTTTTTATTTTTTATTTTTAATATTTTAGGTTAGTTGAGTT
CT0094900 --> TCCTCAGAATTTTT-ATTTTTTATTTTTAATATTTTAGGTTAGTTGAGTT
CT0135604 --> ..............................ggaaggttaggttgaagGTT
651 - 701
RU01609 --> TTT-CTTTTATGTACATTTCATTCGGTGGGAGAAGGAAGCCTAGCATTCC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> TTTTCTTTTATGTACATTTCATTCGGTGGGAGAAGGAAGCCTAGCATTCC
CT0094900 --> TTT-CTTTTATGTACATTTCATTCGGTGGGAGAAGGAAGCCTAGCATTCC
CT0135604 --> TTT-CTTTTATGTACATTTCATTCGGTGGGAGAAGGAAGCCTAGCATTCC
701 - 751
RU01609 --> TGTGACATAGTGTATTAGAAGGGTGAATCGTCTTCATATGTTTAGGTCCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..TGACATAGTGTATTAGAAGGGTGAATCGTCTTCATATGTTTAGGTCCA
CT0123367 <-- ..................................................
ET0052597 <-- ..................................................
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> TGTGACATAGTGTATTAGAAGGGTGAATCGTCTTCA..............
CT0094900 --> TGTGACATAGTGTATTAGAAGGGTGAATCGTCTTCATATGTTTAGGTCCA
CT0135604 --> TGTGACATAGTGTATTAGAAGG-TGAATCGTCTTCATATGTTTAGGTCCA
751 - 801
RU01609 --> CCTTTTTTAATTTTCTTAGCTAGTGAGGAATTGGAAAGTTCCCCTCATAC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- CCTTTTTTAATTTTCTTAGCTAGTGAGGAATTGGAAAGTTCCCCTCATAC
CT0123367 <-- ..................GCTAGTGAGGAATTGGAAAGTTCCCCTCATAC
ET0052597 <-- ......................................taCCCCTCATAC
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> CCTTTTTTAATTT.....................................
CT0135604 --> CCTTTTTTAATTTTCTTAGCTAGTGAGGAATTGGAAAGTTCCCCTCATAC
801 - 851
RU01609 --> ATTCATAAAGA-GATCCAGAATTGTCATCTCTGTATGGTTACTGAAGATA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ATTCAT............................................
CT0123367 <-- ATTCATAAAGA-GATCCAGAATTGTCATCTCTGTATGGTTACTGAAGATA
ET0052597 <-- ATTCATAAAGAAGATCCAGAATTGTCATCTCTGTATGGTTACTGAAGATA
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> ATTCATAAAGA-GATCCAGAATTGTCATCTCTGTATGGTTACTGAAGATA
851 - 901
RU01609 --> TACTGATATTGTAAGCTCAACTCTGTACGGCTATTCTGTGATGTAGTTTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- TACTGATATTGTAAGCTCAACTCTGTACGGCTATTCTGTGATGTAGTTTT
ET0052597 <-- TACTGATATTGTAAGCTCAACTCTGTACGGCTATTCTGTGATGTAGTTTT
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> TACTGATATTGTAAGCTCAACTCTGTACGGCTATTCTGTGATGTAGTTTT
901 - 951
RU01609 --> GTATTATTTTCATAATGAGAAATTATTACATGAGATTATTTTGTGTTAAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0071055 <-- ..................................................
CT0067245 <-- ..................................................
CT0101192 <-- ..................................................
CT0030349 <-- ..................................................
CT0123367 <-- GTATTATTTTCATAATGAGAAATTATTACATG..................
ET0052597 <-- GTATTATTTTCATAATGAGAAATTATTACATGAaaaaaa...........
ET0050067 --> ..................................................
CT0095832 --> ..................................................
CT0097004 --> ..................................................
ET0061519 --> ..................................................
CT0000465 --> ..................................................
ET0134014 --> ..................................................
ET0139143 --> ..................................................
CT0067701 --> ..................................................
CT0094900 --> ..................................................
CT0135604 --> GTATTATTTTCATAATGAGAAATTATTACATGAGATTATTTTGTGTTAAA
951 - 1001
RU01609 --> A
~
CT0071055 <-- .
CT0067245 <-- .
CT0101192 <-- .
CT0030349 <-- .
CT0123367 <-- .
ET0052597 <-- .
ET0050067 --> .
CT0095832 --> .
CT0097004 --> .
ET0061519 --> .
CT0000465 --> .
ET0134014 --> .
ET0139143 --> .
CT0067701 --> .
CT0094900 --> .
CT0135604 --> A
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