SNPs of unigene RU01757
               1      -     51
RU01757        --> GCGGACACAATAATCATCAAGAGTATAATATAATTAATGCAACAATGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- .CGGACACAATAATCATCAAGAGTATAATATAATTAATGCAACAATGGAA
CT0080731      <-- .............ctATCAAGAGTATAATATAATTAATGCAACAATGGAA
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> GCGGACACAATAATCATCAAGAGTATAATATAATTAATGCAACAATGGAA
ET0053926      --> GCGGACACAATAATCATCAAGAGTATAATATAATTAATGCAACAATGGAA
CT0023959      --> ......................GTATAATATAATTAATGCAACAATGGAA
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               51     -    101
RU01757        --> ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
CT0080731      <-- ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
ET0053926      --> ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
CT0023959      --> ACAACACAATGATGAAAAGAAAACAACAAGCCGCACTACTATTAATACCC
CT0000139      --> ........ttttttAAAAGAAAACGACAAGCCGCACTACTATTAATACCC
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               101    -    151
RU01757        --> TCCAGGTCCTGCTGGACTTCCACAGCCCCTACTAGTGTGATTCGAATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- TCCAGGTCCTGCTGGACTTCCACAGCCCCTACTAGTGTGATTCGAATAAC
CT0080731      <-- TCCAGGTCCTGCTGGAC.................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> TCCAGGTCCTGCTGGACTTCCACAGCCCCTACTAGTGTGATTCGAATAAC
ET0053926      --> TCCAGGTCCTGCTGGACTTCCACAGCCCCTACTAGTGTGATTCGAATAAC
CT0023959      --> TCCAGGTCCTGCTGGACTTCCACAGCCCCTACTAGTGTGATTCGAATAAC
CT0000139      --> TCCAGGTCCTGCTGGACTTCCACAGCCCGTACTAGTGTGATTCGAATAAC
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               151    -    201
RU01757        --> ACCACCTTCTTATACACTTAGCTTTCT-GGAATCCTTACAATCAAAA-CG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ACCACCTTCTTATACACTTAG.............................
CT0080731      <-- ..................................................
ET0102934      <-- .........................tT-GGAATCCTTACAATCAAAA-CG
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ACCACCTTCTTATACACTTAGCTTTCT-GGAATCCTTACAATCAAAA-CG
ET0053926      --> ACCACCTTCTTATACACTTAGCTTTCT-GGAATCCTTACAATCAAAAACG
CT0023959      --> ACCACCTTCTTATACACTTAGCTTTCT-GGAATCCTTACAATCAAAA-CG
CT0000139      --> ACCACCTTCTTATACACTTAGCTTTCTTGGAATCCTTAC...........
CT0094584      --> ..CACCTTCTTATACACTTGGCTTTCT-GGAATCCTTACAATCAAAA-CG
ET0108772      --> ..............tttagtctTTTCT-GGAATCCTTACAATCAAAA-CG
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               201    -    251
RU01757        --> A-TGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAAACTGACAGACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- AATGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAAACTGACAGACAG
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> A-TGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAA............
ET0053926      --> A-TGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAA............
CT0023959      --> A-TGTA............................................
CT0000139      --> ..................................................
CT0094584      --> A-TGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAAACTGACAGACAG
ET0108772      --> A-TGTACAGATGCAGTAAGACAGTATGTTTAGGCTAAAACTGACAGACAG
RH57CA37       --> .....ACAGATGCAGTAAGACAGTATGTTTAGGCTAAAACTGACAGACAG
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               251    -    301
RU01757        --> GATCACCGATTTCCACGTTAAGCCTGAGAGACAGTATATGTATACATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- GATCACCGATTTCCTCGTTAAGCCTGAGAGACAGTATATGTATACATCTT
ET0062023      <-- ..TCACCGATTTCCACGTTAAGCCTGAGAGACAGTATATGTATACATCTT
CT0089673      <-- ...............................................CTT
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> GATCACCGATTTCCTCGTTAAGCCTGAGAGACAGTATATGTATACATCTT
ET0108772      --> GATCACCGATTTCCACGTTAAGCCTGAGAGACAGTATATGTATACATCTT
RH57CA37       --> GATCACCGATTTCCACGTTAAGCCTGAGAGACAGTATATGTATACATCTT
ET0114599      --> ......................CCTGAGAGACAGTATATGTATACATCTT
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               301    -    351
RU01757        --> CGAAA-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- CGAAAAGGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
ET0062023      <-- CGAAC-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
CT0089673      <-- CGAAC-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> CGAAA-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
ET0108772      --> CGAAA-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
RH57CA37       --> CGAAC-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
ET0114599      --> CGAAC-GGGGTTGAACAGCAGATTAGGCCAAAATGCTCAGTGTTATATAG
ET0095747      --> ............................aattgtctTCAGTGTTATATAG
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               351    -    401
RU01757        --> ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ACCACAAACATGCCTGATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
ET0062023      <-- ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
CT0089673      <-- ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
CT0105419      <-- ..............CCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ACCACAAACATGCCTGATTTTGCTTTGCTCCATCCA..............
ET0108772      --> ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
RH57CA37       --> ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
ET0114599      --> ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
ET0095747      --> ACCACAAACATGCCCCATTTTGCTTTGCTCCATCCACTAGTAGAAGAGAT
ET0021653      --> ..................................CACTAGTAGAAGAGAT
CT0129181      --> ....................................CTAGTAGAAGAGAT
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               401    -    451
RU01757        --> GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- GATTGCTTag........................................
ET0062023      <-- GATTGCTTGTTT......................................
CT0089673      <-- GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
CT0105419      <-- GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> GATTG.............................................
RH57CA37       --> GATTGCTTGTTTCATGACTTTACAGTTAAGT...................
ET0114599      --> GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
ET0095747      --> GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
ET0021653      --> GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
CT0129181      --> GATTGCTTGTTTCATGACTTTACAGTTAAGTACCTGCTGGGTGTGGGAAT
RH50BT93       --> ...............................ACCTGCTGGGTGTGGGAAT
RH58CB53       --> ...............................ACCTGCTGGGTGTGGGAAT
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               451    -    501
RU01757        --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
CT0105419      <-- CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTG........
ET0095747      --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
ET0021653      --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
CT0129181      --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
RH50BT93       --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
RH58CB53       --> CCGAGACCAACCTGCTGCCGCATATGCTCTGGTATGAGCCTGCTGATCAG
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               501    -    551
RU01757        --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAAAGAGGCGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- TTC...............................................
CT0105419      <-- TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAAAGAGGCGGCA
CT0104023      <-- TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAAAGAGGCGGCA
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGT...............
ET0021653      --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGA............
CT0129181      --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAA..........
RH50BT93       --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAAAGAGGCGGCA
RH58CB53       --> TTCAGGTGATGCTCCATTTAATTCTTGTTTGAAGTTGAAAAGAGGCGGCA
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               551    -    601
RU01757        --> AAGGGCGGCCATTTGGAAGGCGTGCATTAGGCTCACGAAGTTCGTCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- AAGGGCGGCCATTTGGAAGGCGTGCATTAGGCTCACGAAGTTCG......
CT0104023      <-- AAGGGCGGCCATTTGGAAGGCGTGCATTAGGCTCACGAAGTTCGTCAAAA
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> AAGGGCGGCCATTTGGAAGGCGTGCATTAGGCTCACGAAGTTCGTCAAAA
RH58CB53       --> AAGGGCGGCCATTTGGAAGGCGTGCATTAGGCTCACGAAGTTCGTCAAAA
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               601    -    651
RU01757        --> AAAGAATGTGTACATGCTTCAAGCGCAGTGCAGCGTAGACTTGGTGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- AAAGAATGTGTACATGCTTCAAGCGCAGTGCAGCGTAGACTTGGTGAATA
ET0136088      <-- .....................AGCGCAGTGCAGCGTAGACTTGGTGAATA
ET0047315      <-- .......................CGCAGTGCAGCGTAGACTTGGTGAATA
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> AAAGAATGTGTGCATGCTTCAAGCGCAGTGCAGCGTAGACTTGGTGAATA
RH58CB53       --> AAAGAATGTGTGCATGCTTCAAGCGCAGTGCAGCGTAGACTTGGTGAATA
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               651    -    701
RU01757        --> TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
ET0136088      <-- TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
ET0047315      <-- TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
RH58CB53       --> TTGAAGGAGCCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
ET0114561      --> .........CCGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
ET0117007      --> ..........CGTGAAGCAAGGTCAATTGCTTCTGGTGGCATTCGTTTAT
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               701    -    751
RU01757        --> GAAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................  Control
CT0080731      <-- ..................................................  Control
ET0102934      <-- ..................................................  Ethylene
ET0062023      <-- ..................................................  Ethylene
CT0089673      <-- ..................................................  Control
CT0105419      <-- ..................................................  Control
CT0104023      <-- GGAAAACCTTATGCCAAGGATGAGCTTTGATC..................  Control
ET0136088      <-- GGAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  Ethylene
ET0047315      <-- GGAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  Ethylene
RH12H153       <-- ..................................................  WaterDS
CT0021850      <-- ..................................................  Control
CT0047707      <-- ..................................................  Control
ET0138425      <-- ..................................................  Ethylene
CT0065200      <-- ..................................................  Control
CT0111218      <-- ..................................................  Control
CT0027164      <-- ..................................................  Control
CT0038050      <-- ..................................................  Control
CT0038217      <-- ..................................................  Control
CT0040618      <-- ..................................................  Control
CT0049386      <-- ..................................................  Control
ET0000146      <-- ..................................................  Ethylene
ET0041860      --> ..................................................  Ethylene
ET0053926      --> ..................................................  Ethylene
CT0023959      --> ..................................................  Control
CT0000139      --> ..................................................  Control
CT0094584      --> ..................................................  Control
ET0108772      --> ..................................................  Ethylene
RH57CA37       --> ..................................................  WaterDS
ET0114599      --> ..................................................  Ethylene
ET0095747      --> ..................................................  Ethylene
ET0021653      --> ..................................................  Ethylene
CT0129181      --> ..................................................  Control
RH50BT93       --> GAAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  WaterDS
RH58CB53       --> GAAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  WaterDS
ET0114561      --> GGAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  Ethylene
ET0117007      --> GGAAAACCTTATGCCAAGGATGAGCTTTGATCTGAGGGAACCTAAAATCA  Ethylene
CT0118599      --> .......................................ACCTAAAATCA  Control
CT0015123      --> ..................................................  Control

               751    -    801
RU01757        --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
ET0047315      <-- GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
RH12H153       <-- ............................................ACCAAG
CT0021850      <-- ................................................AG
CT0047707      <-- ................................................AG
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGT......
RH58CB53       --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGT......
ET0114561      --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
ET0117007      --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
CT0118599      --> GTATAGTTTGGATTCATGCATCGAATTTCTTCTCTGGTTGGAGTACCAAG
CT0015123      --> ..................................................

               801    -    851
RU01757        --> AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- AACCTTGATAATCTCTACAAGTTGATCCACTGC.................
ET0047315      <-- AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
RH12H153       <-- AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
CT0021850      <-- AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
CT0047707      <-- AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
ET0138425      <-- ..............................TGCATTCTCTCCTGGAAACA
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
ET0117007      --> AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
CT0118599      --> AACCTTGATAATCTCTACAAGTTGATCCACTGCATTCTCTCCTGGAAACA
CT0015123      --> ..................................................

               851    -    901
RU01757        --> ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ACG...............................................
RH12H153       <-- ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAGATA
CT0021850      <-- ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACGACCAGCTGACCAGATA
CT0047707      <-- ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAGATA
ET0138425      <-- ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAGATA
CT0065200      <-- ..................................................
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAG...
ET0117007      --> ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAA...............
CT0118599      --> ACGGCTGGCCTAGAAGGAGCTCAGCAAGGACACAACCAGCTGACCAGATA
CT0015123      --> ..................................................

               901    -    951
RU01757        --> TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGAGCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGGGCCCG
CT0021850      <-- TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGAGCCCG
CT0047707      <-- TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGAGCCCG
ET0138425      <-- TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGAGCCCG
CT0065200      <-- .........................CACCAAAGATGAGCTCAGGAGCCCG
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> TCGATGGATGTTGTATATTCCGTTGCACCAAAGATGAGCTCAGGAGCCCG
CT0015123      --> ..................................................

               951    -   1001
RU01757        --> ATAGTAGCGAGAACATATGTAGGAAATGTTT-GCTTCACCCCTGACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ATAGTAGCGAGAACATATGTAGGAAATGTTT-GCTTCACCCCTGACCAAT
CT0021850      <-- ATAG..............................................
CT0047707      <-- ATAGTAGCGAGAACATATGTAGGAAATGTTT-GCTTCACCCCTGACCAAT
ET0138425      <-- ATAGTAGCGAGAACATATGTAGGAAATGTTT-GCTACACCCCTGACCAAT
CT0065200      <-- ATAGTAGCGAGAACATATGTAGGAAATGTTTTGCTTCACCCCTGACCAAT
CT0111218      <-- ..................................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ATAGTAGCGAGAACA...................................
CT0015123      --> .............CATATGTAGGAAATGTTT-GCTTCACCCCTGACCAAT

               1001   -   1051
RU01757        --> ACTTTTGCACTTCCAAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ACTTTTGCACTTCCAAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC
CT0021850      <-- ..................................................
CT0047707      <-- ACTTTTGCA.........................................
ET0138425      <-- ACTTTTGCACTTCCAAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC
CT0065200      <-- ACTTTTGCACTTCCAAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC
CT0111218      <-- ..............AAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ACTTTTGCACTTCCAAAGTCGCAAATCTTAACCTGATGGGTGAGGGGATC

               1051   -   1101
RU01757        --> AACCAAAAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- AACCAAAAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- AACCAAAAGATTTTGA..................................
CT0065200      <-- AACCAAAAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0111218      <-- AACCAAAAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0027164      <-- ......AAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0038050      <-- ......AAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0038217      <-- .......AGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG
CT0040618      <-- ..................................................
CT0049386      <-- ..................................................
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> AACCAAAAGATTTTGAGGTTTCACATCTCTATGGCAAACCCCGGGAACGG

               1101   -   1151
RU01757        --> CATGGATATAAGCAAAGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- CATGGATATAAGCAAGGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- CATGGATATAAGCAAGGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0111218      <-- CATGGATATAAGCAAGGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0027164      <-- CATGGATATAAGCAAAGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0038050      <-- CATGGATATAAGCAAAGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0038217      <-- CATGGATATAAGCAAAGCCCCTAAAGATTTGATATGTATAAAGTTTCACA
CT0040618      <-- .......................................AAAGTTTCACA
CT0049386      <-- ...............................................ACA
ET0000146      <-- ..................................................
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> CATGGATATAAGCAAGGCCCCTAAAGATTTGATA................

               1151   -   1201
RU01757        --> TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- TAGAT.............................................
CT0111218      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0027164      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0038050      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0038217      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0040618      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
CT0049386      <-- TAGATGAGTGGCATCCTATGGTTCATACTACTGTAGTGCTTCAGAACCCT
ET0000146      <-- .........................................CAGAACCCT
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               1201   -   1251
RU01757        --> GTACATAGTCTCGGGTACATATTCCATGACCAAATTCAGGAAAAGCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- GT................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTCAGGAAAAGCTCTT
CT0027164      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTC.............
CT0038050      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTC.............
CT0038217      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTC.............
CT0040618      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTCAGGAAAAGCTCAT
CT0049386      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTCAGGAAAAGCTCAT
ET0000146      <-- GTACATAGTCTCGGGTACATATTCCATGACCAAATTCAGGAAAAGCTCTT
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               1251   -   1301
RU01757        --> CTTTAGTCGTTGTAGAGAAGAAACAATGCTTCAGGGAAACAACATTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- ..................................................
CT0080731      <-- ..................................................
ET0102934      <-- ..................................................
ET0062023      <-- ..................................................
CT0089673      <-- ..................................................
CT0105419      <-- ..................................................
CT0104023      <-- ..................................................
ET0136088      <-- ..................................................
ET0047315      <-- ..................................................
RH12H153       <-- ..................................................
CT0021850      <-- ..................................................
CT0047707      <-- ..................................................
ET0138425      <-- ..................................................
CT0065200      <-- ..................................................
CT0111218      <-- CTTTAGTCGTTGT.....................................
CT0027164      <-- ..................................................
CT0038050      <-- ..................................................
CT0038217      <-- ..................................................
CT0040618      <-- CTTTAGTCGTTGTAGAGAAGAAACAATGCTTCAGGGAAACAACATTTGGG
CT0049386      <-- CTTTAGTCGTTGTAGAGAAGAAACAATGCTTCAGGGAAACAACATTTGGG
ET0000146      <-- CTTTAGTCGTTGTAGAGAAGAAACAATGCTTCAGGGAAACAACATTTGGG
ET0041860      --> ..................................................
ET0053926      --> ..................................................
CT0023959      --> ..................................................
CT0000139      --> ..................................................
CT0094584      --> ..................................................
ET0108772      --> ..................................................
RH57CA37       --> ..................................................
ET0114599      --> ..................................................
ET0095747      --> ..................................................
ET0021653      --> ..................................................
CT0129181      --> ..................................................
RH50BT93       --> ..................................................
RH58CB53       --> ..................................................
ET0114561      --> ..................................................
ET0117007      --> ..................................................
CT0118599      --> ..................................................
CT0015123      --> ..................................................

               1301   -   1351
RU01757        --> TGATCCATCAAACGCATCAGCTGCAACTCTCGATTTTTATATCTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0045305      <-- .................................................
CT0080731      <-- .................................................
ET0102934      <-- .................................................
ET0062023      <-- .................................................
CT0089673      <-- .................................................
CT0105419      <-- .................................................
CT0104023      <-- .................................................
ET0136088      <-- .................................................
ET0047315      <-- .................................................
RH12H153       <-- .................................................
CT0021850      <-- .................................................
CT0047707      <-- .................................................
ET0138425      <-- .................................................
CT0065200      <-- .................................................
CT0111218      <-- .................................................
CT0027164      <-- .................................................
CT0038050      <-- .................................................
CT0038217      <-- .................................................
CT0040618      <-- TGATCCATCAAACGCATCAGCTGCAACTCTCGATTTTTATATCTCCTGT
CT0049386      <-- TGATCCATCAAACGCATCAGCTGCAACTCTCGATTTTTATATCTCCTGT
ET0000146      <-- TGATCCATCAAAAGCATCAGCTGCAACTCTCG.................
ET0041860      --> .................................................
ET0053926      --> .................................................
CT0023959      --> .................................................
CT0000139      --> .................................................
CT0094584      --> .................................................
ET0108772      --> .................................................
RH57CA37       --> .................................................
ET0114599      --> .................................................
ET0095747      --> .................................................
ET0021653      --> .................................................
CT0129181      --> .................................................
RH50BT93       --> .................................................
RH58CB53       --> .................................................
ET0114561      --> .................................................
ET0117007      --> .................................................
CT0118599      --> .................................................
CT0015123      --> .................................................