SNPs of unigene RU02101
               13     -     63
RU02101        --> acTCACTCTAAAACCCACCTAATTTTCTCTCATCTTCATCTCGTTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ctTCACTCTAAAACCCACCTAATTTTCTCTCATCTTCATCTCGTTGTTTT
CT0103860      --> .....................ATTTTCTCTCATCTTCATCTCGTTGTTTT
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               63     -    113
RU02101        --> TGTCTCAGATGGCGACCAAGAGGAGTGTGAGTACCTTGAACGAGGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ................................................AT
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> TGTCTCAGATGGCGACCAAGAGGAGTGTGAGTACCTTGAAGGAGGCTGAT
CT0103860      --> TGTCTCAGATGGCGACCAAGAGGAGTGTGAGTACCTTGAAGGAGGCTGAT
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               113    -    163
RU02101        --> TTGAAGGGCAAGAGGGTTTTCGTTAGGGTTGATCTCAATGTTCCTTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- TTGAAGGGCAAGAGGGTTTTCGTTAGGGTTGATCTCAATGTTCCTTTGGA
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> TTGAAGGGCA........................................
CT0103860      --> TTGAAGGGCAAGAGGGTTTTCGTTAGGGTTGATCTCAATGTTCCTTTGGA
ET0134553      --> .....ggtttttcgtttagggtttgtattctctaattgtttcctTTTGGA
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               163    -    213
RU02101        --> TGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCGGCTGTCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- TGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCGGCTGTCCCCA
ET0137974      <-- ..............................................CCCA
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> TGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCTGCTGTCCCCA
ET0134553      --> TGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCGGCTGTCCCCA
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               213    -    263
RU02101        --> CCATCAAGTACTTGCTCGGCAATGGTGCCAAAGTCATCTTGGCTTCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- CCATCAAGTACTTGCTCGGCAATGGTGCCAAAGTCATCTTGGCTTCTCAC
ET0137974      <-- CCATCAAGTACTTGCTCGGCAATGGTGCCAAAGTCATCTTGGCTTCTCAC
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> CCATCAAGTACTTGCTCGCCAATGGTGCCAAAGTCATCTTGGCTTCTCAC
ET0134553      --> CCATCAAGTACTTGCTCGGCAATGGTGCCAAAGTCATCTTGGCTTCTCAC
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               263    -    313
RU02101        --> TTGGGACGTCCAAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- TTGGGACGTCCAAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGT
ET0137974      <-- TTGGGACGTCCAAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGT
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> TTGGGACcg.........................................
ET0134553      --> TTGGGACGTCCAAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGT
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               313    -    363
RU02101        --> GCCAAGACTGTCTGAGCTCCTTGGAGTGGAGGTTAAAATCGCTAATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- GCCAAGACTGTCTGAGCTCCTTGGAGTGGAGGTTAAAATCGCTA......
ET0137974      <-- GCCAAGACTGTCTGAGCTCCTTGGAGTGGAGGTTAAAATCGCTAATGATT
CT0107038      <-- ................CTCCTTGGCGTGGAGGTTAAAATCGCTAATGATT
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> GCCAAGACTGTCTGAGCTCCTTGGAGTGGAGGTTAAAATCGCTAATGATT
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               363    -    413
RU02101        --> GCGTCGGTGTGGAAGTTGAAAAGTTGGTTGCTGAGCTTCCAGAGGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- GCGTCGGTGTGGAAGTTGAAAAGTTGGTTGCTGAGCTTCCAGAGGGAGGA
CT0107038      <-- GCGTCGGTGTGGAAGTTGAAAAGTTGGTTGCTGAGCTTCCAGAGGGAGGA
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> GCGTCGGTG.........................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               413    -    463
RU02101        --> GTTTTACTCCTTGAGAATGTCAGGTTCTACAAGGAGGAAGAGAAGAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- GTTTTACTCCTTGAGAATGTCAGGTTCTACAAGGAGGAAGAGAA......
CT0107038      <-- GTTTTACTTCTTGAGAATGTCAGGTTCTACAAGGAGGAAGAGAAGAATGA
ET0060721      <-- ........................TTCTACAAGGAGGAAGAGAAGAATGA
ET0080564      <-- ........................TTCTACAAGGAGGAAGAGAAGAATGA
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               463    -    513
RU02101        --> TCCCGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- TCCCGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
ET0060721      <-- TCCCGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
ET0080564      <-- TCCCGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ...CGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
CT0076710      --> ...CGAGTTTGCCAAGAAGCTTGCTTCACTTGCAGATGTCTATGTTAATG
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               513    -    563
RU02101        --> ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACAGAAGGAGTGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACA............
ET0060721      <-- ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACAGAAGGAGTGGCG
ET0080564      <-- ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACAGAAGGAGTGGCG
ET0138038      <-- .....................GGGCTCATGCATCCACAGAAGGAGTGGCG
ET0050323      <-- .......................................AAGGAGTGGCG
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACAGAAGGAGTGGCG
CT0076710      --> ATGCTTTTGGCACTGCTCACAGGGCTCATGCATCCACAGAAGGAGTGGCG
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               563    -    613
RU02101        --> AAGTACTTGAAGCCTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- AAGTACTTGAAGCCTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
ET0080564      <-- AAGTACTTGAAGCCTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
ET0138038      <-- AAGTACTTGAAGCCTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
ET0050323      <-- AAGTACTTGAAGCCTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
ET0065702      <-- .............CTTCCGTTGCTGGATACCTTATGCAGAAGGAACTTGA
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> AAGTACTTGAAGCCTTCTGTTGCTGGATACCTTATGCAGAAGGAACTTGA
CT0076710      --> AAGTACTTGAAGCCTTCTGTTGCTGGATACCTTATGCAGAAGGAACTTGA
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               613    -    663
RU02101        --> CTATCTTGTTGGTGCTGTGGCAAATCCCAAGAGACCATTTGCTGCTATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................  Ethylene
ET0137974      <-- ..................................................  Ethylene
CT0107038      <-- ..................................................  Control
ET0060721      <-- CTAT..............................................  Ethylene
ET0080564      <-- actaat............................................  Ethylene
ET0138038      <-- CTATCTTGTTGGTGCTGTGGCAAAGCCCAAGAGACCATTTGCTGCTATTG  Ethylene
ET0050323      <-- CTATCTTGTTGGTGCTGTGGCAAAGCCCAAGAGACCATTTGCTGCTATTG  Ethylene
ET0065702      <-- CTATCTTGTTGGTGCTGTGGCAAAGCCCAAGAGACCATTTGCTGCTATTG  Ethylene
CT0058615      <-- .................TGGCAAATCCCAAGAGACCATTTGCTGCTATTG  Control
ET0136448      <-- .....................................TTTGCTGCTATTG  Ethylene
ET0127933      <-- ......................................TTGCTGCTATTG  Ethylene
ET0130885      <-- ......................................TTGCTGCTATTG  Ethylene
CT0031029      <-- ..................................................  Control
ET0047600      <-- ..................................................  Ethylene
CT0133493      <-- ..................................................  Control
CT0135111      <-- ..................................................  Control
CT0135938      <-- ..................................................  Control
CT0136145      <-- ..................................................  Control
CT0136322      <-- ..................................................  Control
CT0137524      <-- ..................................................  Control
CT0110394      <-- ..................................................  Control
ET0102984      <-- ..................................................  Ethylene
CT0063837      <-- ..................................................  Control
ET0083986      <-- ..................................................  Ethylene
ET0086944      <-- ..................................................  Ethylene
CT0090332      <-- ..................................................  Control
ET0013500      <-- ..................................................  Ethylene
CT0101765      <-- ..................................................  Control
ET0082434      <-- ..................................................  Ethylene
CT0134919      <-- ..................................................  Control
ET0114792      <-- ..................................................  Ethylene
ET0120373      <-- ..................................................  Ethylene
ET0122852      <-- ..................................................  Ethylene
ET0123455      <-- ..................................................  Ethylene
ET0125539      <-- ..................................................  Ethylene
ET0125650      <-- ..................................................  Ethylene
ET0125921      <-- ..................................................  Ethylene
ET0126345      <-- ..................................................  Ethylene
ET0126350      <-- ..................................................  Ethylene
ET0130691      <-- ..................................................  Ethylene
CT0081343      <-- ..................................................  Control
CT0084201      <-- ..................................................  Control
CT0086884      <-- ..................................................  Control
CT0089446      <-- ..................................................  Control
CT0090486      <-- ..................................................  Control
CT0094145      <-- ..................................................  Control
CT0046304      --> ..................................................  Control
CT0103860      --> ..................................................  Control
ET0134553      --> ..................................................  Ethylene
CT0019764      --> CTATCTTGTTGGTG....................................  Control
CT0076710      --> CTATCTTGTTGGTG....................................  Control
CT0032070      --> .....................AAATCCCAAGAGACCATTTGCTGCTATTG  Control
CT0017947      --> ..................................................  Control
ET0058127      --> ..................................................  Ethylene
ET0084477      --> ..................................................  Ethylene
ET0057871      --> ..................................................  Ethylene
ET0064137      --> ..................................................  Ethylene
ET0120117      --> ..................................................  Ethylene
CT0042068      --> ..................................................  Control
ET0142507      --> ..................................................  Ethylene
CT0110029      --> ..................................................  Control
CT0056854      --> ..................................................  Control
ET0032515      --> ..................................................  Ethylene
ET0099177      --> ..................................................  Ethylene
ET0044082      --> ..................................................  Ethylene
CT0056004      --> ..................................................  Control
ET0011531      --> ..................................................  Ethylene

               663    -    713
RU02101        --> TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
ET0050323      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
ET0065702      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
CT0058615      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
ET0136448      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
ET0127933      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
ET0130885      <-- TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
CT0031029      <-- ............................TGGAGTCATAGAGTCCTTATTG
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> TTGGTGGTTCGAAGGTGTCATCCAAGATTGGAGTCATAGAGTCCTTATTG
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               713    -    763
RU02101        --> GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAAT...............
ET0050323      <-- GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
ET0065702      <-- GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
CT0058615      <-- GCAAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
ET0136448      <-- GCAAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
ET0127933      <-- GCAAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
ET0130885      <-- GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
CT0031029      <-- GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
ET0047600      <-- ..............................GGAATGATCTTTACCTTTTT
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> GCGAAGGTTAACATTCTAGTGTTGGGTGGAGGAATGATCTTTACCTTTT-
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               763    -    813
RU02101        --> A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGG......
ET0065702      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0058615      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
ET0136448      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
ET0127933      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
ET0130885      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0031029      <-- A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCCCTTGTTGAGGAAGACA
ET0047600      <-- ATTAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0133493      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0135111      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0135938      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0136145      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0136322      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0137524      <-- ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> A-TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
CT0017947      --> ..TAAGGCTCAAGGGTATTCAGTTGGATCTTCCC-TTGTTGAGGAAGACA
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               813    -    863
RU02101        --> AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- AGCTAGATCTTGC.....................................
CT0058615      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGG...........
ET0136448      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0127933      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0130885      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0031029      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGC................
ET0047600      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0133493      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0135111      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0135938      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0136145      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0136322      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0137524      <-- AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0110394      <-- ..CTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0102984      <-- ......ATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
CT0063837      <-- .........................GGAGAAGGCAAAGGCCAAGGGAGTT
ET0083986      <-- .......................................CCAAGGGAGTT
ET0086944      <-- .......................................CCAAGGGAGTT
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> AGCTAGATCTTGCAAAATCACTTATGGAGAAG..................
CT0017947      --> AGCTAGATCTTGCAAAATCACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0058127      --> ..................CACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0084477      --> ..................CACTTATGGAGAAGGCAAAGGCCAAGGGAGTT
ET0057871      --> .........................................AAGGGAGTT
ET0064137      --> .........................................AAGGGAGTT
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               863    -    913
RU02101        --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- TCTATTCTGCTCCCAACTGATGTG..........................
ET0127933      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAataaag.........
ET0130885      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGATTAAGTTT.......
CT0031029      <-- ..................................................
ET0047600      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0133493      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0135111      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0135938      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0136145      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0136322      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0137524      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0110394      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0102984      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0063837      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0083986      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0086944      <-- TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0090332      <-- ..........TCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0013500      <-- ...............................CTGAT-AAGTTT-GCTGCT
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0058127      --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0084477      --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0057871      --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0064137      --> TCTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
ET0120117      --> .CTATTCTGCTCCCAACTGATGTGGTTATTGCTGAT-AAGTTT-GCTGCT
CT0042068      --> ...............................CTGAT-AAGTTTTGCTGCT
ET0142507      --> .......................................GTTT-GCTGCT
CT0110029      --> .................................................T
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               913    -    963
RU02101        --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0133493      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0135111      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0135938      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0136145      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0136322      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0137524      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCATATGGTTGGAT
CT0110394      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0102984      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0063837      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0083986      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0086944      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0090332      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0013500      <-- GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0101765      <-- .ATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0082434      <-- ...................TGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0134919      <-- ..................................................
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0058127      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0084477      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0057871      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0064137      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0120117      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0042068      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
ET0142507      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0110029      --> GATGCCAACAGCAAGGTGGTGCCAGCGTCTGCCATTCCAGATGGTTGGAT
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               963    -   1013
RU02101        --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- GGGTTTGGATATCGGACC................................
CT0133493      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0135111      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0135938      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0136145      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0136322      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0137524      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0110394      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0102984      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0063837      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0083986      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0086944      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0090332      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0013500      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0101765      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0082434      <-- GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0134919      <-- ..................................TTCAATGAAGCTCTGG
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTa.............
ET0058127      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0084477      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0057871      --> GG................................................
ET0064137      --> GG................................................
ET0120117      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0042068      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
ET0142507      --> GG................................................
CT0110029      --> GGGTTTGGATATCGGACCAGATTCCATCAAGACTTTCAATGAAGCTCTGG
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1013   -   1063
RU02101        --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ACACCACTAAGACTGTT.................................
CT0135111      <-- ACACCACTAAGACTGTT.................................
CT0135938      <-- ACACCACTAAGACTGTT.................................
CT0136145      <-- ACACCACTAAGACTGTT.................................
CT0136322      <-- ACACCACTAAagaactagtt..............................
CT0137524      <-- ACACCACTAAGACTGTT.................................
CT0110394      <-- ACACCACTAAGACTGTTATATGGA..........................
ET0102984      <-- ACACCACTAAGACTGTTATATGGAATGGACCT..................
CT0063837      <-- ACACGACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0083986      <-- ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGT..........
ET0086944      <-- ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGT..........
CT0090332      <-- ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0013500      <-- ACACGACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
CT0101765      <-- ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0082434      <-- ACACGACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
CT0134919      <-- ACACGACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0084477      --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
CT0042068      --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
ET0142507      --> ..................................................
CT0110029      --> ACACCACTAAGACTGTTATATGGAATGGACCTATGGGTGTGTTTGAGTTT
CT0056854      --> ...............................................TTT
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1063   -   1113
RU02101        --> GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAGCTTGCAGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- GAAAAGTTTG........................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAG...........
ET0013500      <-- GAAAAGTTTGCTGCT...................................
CT0101765      <-- GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAGCTTGCAGAGCT
ET0082434      <-- GAAAAGTTTGCTGCTGGCACCGAGGCG.......................
CT0134919      <-- GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAGCTTGCAGAGCT
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ag................................................
ET0084477      --> ag................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> GAAAAGTTTGCTGCTGGCACCGAGGCG.......................
CT0042068      --> GAAAAGTTTGCTGCTG..................................
ET0142507      --> ..................................................
CT0110029      --> GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAGCTTGCAGAGCT
CT0056854      --> GAAAAGTTTGCTGCTGGCACCGAGGCGATTGCTAAGAAGCTTGCAGAGCT
ET0032515      --> ..................................................
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1113   -   1163
RU02101        --> AAGTGGCAAGGGAGTTACAACTATCATTGGAGGTGGTGACTCTGTAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- AAGTGGCAAGGGAGTTACAACTATCAT.......................
ET0082434      <-- ..................................................
CT0134919      <-- AAGTGGCAAGGGAGTTACAACTATCATTGGAGGTGGTGACTCTGTAGCTG
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> AAGTGG............................................
CT0056854      --> AAGTGGCAAGGGAGTTACAACTATCATTGGAGGTGGTGACTCTGTAGCTG
ET0032515      --> .........GGGAGTTACAACTATCATTGGAGGTGGTGACTCTGTAGCTG
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1163   -   1213
RU02101        --> CTGTGGAGAAGGTTGGCCTTGCTGACAAAATGAGCCACATTTCAACTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- CTGTGGAGAAGGTTGGCCTTGCTGACAAAATGAGCCAC............
ET0114792      <-- ..................................................
ET0120373      <-- ..................................................
ET0122852      <-- ..................................................
ET0123455      <-- ..................................................
ET0125539      <-- ..................................................
ET0125650      <-- ..................................................
ET0125921      <-- ..................................................
ET0126345      <-- ..................................................
ET0126350      <-- ..................................................
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> CTGTGGAGAAGGTTGGCCTTGCTGACAAAATGAGCCACATTTCAACCGGA
ET0032515      --> CTGTGGAGAAGGTTGGCCTTGCTGACAAAATGAGCCACATTTCAACTGGA
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1213   -   1263
RU02101        --> GGCGGTGCAAGCTTGGAGCTTCTTGAAGGGAAAACCCTCCCTGGAGTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- .........................................cGGAGTCCT
ET0120373      <-- .........................................cGGAGTCCT
ET0122852      <-- .........................................cGGAGTCCT
ET0123455      <-- .........................................cGGAGTCCT
ET0125539      <-- .........................................cGGAGTCCT
ET0125650      <-- .........................................cGGAGTCCT
ET0125921      <-- .........................................cGGAGTCCT
ET0126345      <-- .........................................cGGAGTCCT
ET0126350      <-- .........................................cGGAGTCCT
ET0130691      <-- ..................................................
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> GGCGGTGCA.........................................
ET0032515      --> GGCGGTGCAAGCTTGGAGCTTCTTGAAGGGAAAACCCTCCCTGGAGTCCT
ET0099177      --> ..................................................
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1263   -   1313
RU02101        --> TGCTCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0120373      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0122852      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCTTAGTTGTTCATTTT-GT
ET0123455      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0125539      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0125650      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0125921      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0126345      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0126350      <-- TGCCCTTGACGATGCTTAAGCTGAAATTTTTCT-AGTTGTTCATTTT-GT
ET0130691      <-- ............................................TTT-GT
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> TGCTCTTGACGATGCTTAAGCTGAATTTTTTCT-AGTTGTTCATTTTTGT
ET0099177      --> ...............................CT-AGTTGTTCATTTT-GT
ET0044082      --> ..................................................
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1313   -   1363
RU02101        --> GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAG-TATAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0120373      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0122852      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0123455      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0125539      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0125650      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0125921      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0126345      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0126350      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAGGTATAACAGA
ET0130691      <-- GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAG-TATAACAGA
CT0081343      <-- ..................................................
CT0084201      <-- ..................................................
CT0086884      <-- ..................................................
CT0089446      <-- ..................................................
CT0090486      <-- ..................................................
CT0094145      <-- ..................................................
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAG-TATAACAGA
ET0099177      --> GACTGATAGATGGTTGGTTTGTCAACCAGACTGGATCGAG-TATAACAGA
ET0044082      --> ...................cactaagcattcatggtttgG-TATAACAGA
CT0056004      --> ..................................................
ET0011531      --> ..................................................

               1363   -   1413
RU02101        --> GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0120373      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0122852      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0123455      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0125539      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0125650      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0125921      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0126345      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0126350      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGCGTAGATTTGAATAAGTGCT
ET0130691      <-- GCTGGACTT-GTAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0081343      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0084201      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0086884      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0089446      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0090486      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0094145      <-- ...........TAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> GC................................................
ET0099177      --> GCTGGACTTTGTAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
ET0044082      --> GCTGGACTT-GTAGAGGCTTAGCTTTATAGGGTAGATTTGAATAAGTGCT
CT0056004      --> .......................TTTATAGGGTAGATTTGAATAAGTGCT
ET0011531      --> ..................................................

               1413   -   1463
RU02101        --> GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0120373      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0122852      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0123455      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0125539      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0125650      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0125921      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0126345      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0126350      <-- GTCATGAGTTACCGTATTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0130691      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0081343      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0084201      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0086884      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0089446      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0090486      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0094145      <-- GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0044082      --> GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
CT0056004      --> GTCATGAGTTACCGTTTTGCAATGCTTGGAATTGAATTGGATCTGTTTTG
ET0011531      --> .................................GAATTGGATCTGTTTTG

               1463   -   1513
RU02101        --> GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ..................................................
ET0137974      <-- ..................................................
CT0107038      <-- ..................................................
ET0060721      <-- ..................................................
ET0080564      <-- ..................................................
ET0138038      <-- ..................................................
ET0050323      <-- ..................................................
ET0065702      <-- ..................................................
CT0058615      <-- ..................................................
ET0136448      <-- ..................................................
ET0127933      <-- ..................................................
ET0130885      <-- ..................................................
CT0031029      <-- ..................................................
ET0047600      <-- ..................................................
CT0133493      <-- ..................................................
CT0135111      <-- ..................................................
CT0135938      <-- ..................................................
CT0136145      <-- ..................................................
CT0136322      <-- ..................................................
CT0137524      <-- ..................................................
CT0110394      <-- ..................................................
ET0102984      <-- ..................................................
CT0063837      <-- ..................................................
ET0083986      <-- ..................................................
ET0086944      <-- ..................................................
CT0090332      <-- ..................................................
ET0013500      <-- ..................................................
CT0101765      <-- ..................................................
ET0082434      <-- ..................................................
CT0134919      <-- ..................................................
ET0114792      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0120373      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0122852      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0123455      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0125539      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0125650      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0125921      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0126345      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGT.............
ET0126350      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAagt............
ET0130691      <-- GTTGGCTCTGTTTTTTAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0081343      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0084201      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0086884      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0089446      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0090486      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0094145      <-- GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0046304      --> ..................................................
CT0103860      --> ..................................................
ET0134553      --> ..................................................
CT0019764      --> ..................................................
CT0076710      --> ..................................................
CT0032070      --> ..................................................
CT0017947      --> ..................................................
ET0058127      --> ..................................................
ET0084477      --> ..................................................
ET0057871      --> ..................................................
ET0064137      --> ..................................................
ET0120117      --> ..................................................
CT0042068      --> ..................................................
ET0142507      --> ..................................................
CT0110029      --> ..................................................
CT0056854      --> ..................................................
ET0032515      --> ..................................................
ET0099177      --> GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
ET0044082      --> GTTGGCTCTGTTTTTTAACAATGTAATGATCCAAAGTGCACTAAGCATTC
CT0056004      --> GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC
ET0011531      --> GTTGGCTCTGTTTTTGAACAATGTAATGATCCAAAGTGCACTAAGCATTC

               1513   -   1563
RU02101        --> ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0022543      <-- ......................................
ET0137974      <-- ......................................
CT0107038      <-- ......................................
ET0060721      <-- ......................................
ET0080564      <-- ......................................
ET0138038      <-- ......................................
ET0050323      <-- ......................................
ET0065702      <-- ......................................
CT0058615      <-- ......................................
ET0136448      <-- ......................................
ET0127933      <-- ......................................
ET0130885      <-- ......................................
CT0031029      <-- ......................................
ET0047600      <-- ......................................
CT0133493      <-- ......................................
CT0135111      <-- ......................................
CT0135938      <-- ......................................
CT0136145      <-- ......................................
CT0136322      <-- ......................................
CT0137524      <-- ......................................
CT0110394      <-- ......................................
ET0102984      <-- ......................................
CT0063837      <-- ......................................
ET0083986      <-- ......................................
ET0086944      <-- ......................................
CT0090332      <-- ......................................
ET0013500      <-- ......................................
CT0101765      <-- ......................................
ET0082434      <-- ......................................
CT0134919      <-- ......................................
ET0114792      <-- ......................................
ET0120373      <-- ......................................
ET0122852      <-- ......................................
ET0123455      <-- ......................................
ET0125539      <-- ......................................
ET0125650      <-- ......................................
ET0125921      <-- ......................................
ET0126345      <-- ......................................
ET0126350      <-- ......................................
ET0130691      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGC...
CT0081343      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0084201      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0086884      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0089446      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0090486      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0094145      <-- ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGCAAA
CT0046304      --> ......................................
CT0103860      --> ......................................
ET0134553      --> ......................................
CT0019764      --> ......................................
CT0076710      --> ......................................
CT0032070      --> ......................................
CT0017947      --> ......................................
ET0058127      --> ......................................
ET0084477      --> ......................................
ET0057871      --> ......................................
ET0064137      --> ......................................
ET0120117      --> ......................................
CT0042068      --> ......................................
ET0142507      --> ......................................
CT0110029      --> ......................................
CT0056854      --> ......................................
ET0032515      --> ......................................
ET0099177      --> ATGGTTTagt............................
ET0044082      --> ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTG....
CT0056004      --> ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGac..
ET0011531      --> ATGGTTTGGTATAAAATGTGATGTTTTTGGAGTGC...