SNPs of unigene RU02211
               1      -     51
RU02211        --> TTTTTTTTTGTCTCAAGAGGTATCCTACCATCATCAACATTACAATGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- TTTTTTTTTGTCTCAAGAGGTATCCTACCATCATCAACATTACAATGACT
CT0029332      <-- .........................acctATCATCAACATTACAATGACT
CT0045883      <-- .........................acctATCATCAACATTACAATGACT
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               51     -    101
RU02211        --> ATCCAATAGAGTTCAACACAAGACAAACTGGACTTAATGTCAATACATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ATCCAATTGAGTTCAACACAAGACAAACTGGACTTAATGTCAATACATTG
CT0029332      <-- ATCCAATAGAGTTCAACACAAGACAAACTGGACTTAATGTCAATACATTG
CT0045883      <-- ATCCAATAGAGTTCAACACAAGACAAACTGGACTTAATGTCAATACATTG
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               101    -    151
RU02211        --> GCTTGCTAACTCTCACTCTTAATAAGTTCCTCATGGTGATCAATCACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- GCTTGCTAACTCTCACTCTTAATAAGTTCCTCATGGTGATCAATCACTAC
CT0029332      <-- GCTTGCTAACTCTCACTCTTAATAAGTTCCTCATGGTGATCAATCACTAC
CT0045883      <-- GCTTGCTAACTCTCACTCTTAATAAGTTCCTCATGGTGATCAATCACTAC
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               151    -    201
RU02211        --> ATAGGAAAAACTGAACATATAAGATCGCTCAAATTGTCAGAAAATACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ATAG..............................................
CT0029332      <-- ATAGGAAAAACTGAACATATAAGATCGCTCAAATTGTCAGAAAATACAGC
CT0045883      <-- ATAGGAAAAACTGAACATATAAGATCGCTCAAATTGTCAGAAAATACAGC
ET0092002      <-- .................................................C
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> .......AAACTGAACATATAAGATCGCTCAAATTGTCAGAAAATACAGC
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               201    -    251
RU02211        --> ATACAAAAGCCAAATCCAAA-TACCAAGAAGGTTCACA-GTTTT-G-TGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ATACAAAAGCCAAATCCAAA-TACCAAGAAGGTTCACA-GTTTTTGTTGT
CT0045883      <-- ATACAAAAGCCAAATCCAAA-TACCAAGAAGGTTCACACGTTTTtttgtt
ET0092002      <-- ATACAAAACCCAGATCCAAA-TACCAAGAAGGTTCACA-GTTTTTGTTGT
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ATACAAAAGCCAAATCCAAAATACCAAGAAGGTTCACA-GTTTT-G-TGT
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               251    -    301
RU02211        --> TTTCCATGGATAAAACTTTACTTGGCTGACATTACATTTGCACGTCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- TTTCCATGGAT.......................................
CT0045883      <-- cgttttccactggat...................................
ET0092002      <-- TTTCCATGGATAAAACTTTACTTGGCTGACATTACATTTGCACGTCTATA
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> TTTCCATGGATAAAACTTTACT-GGCTGACATTACATTTGCACG......
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               301    -    351
RU02211        --> AATATTAGATCCCACAAGGTTTACATGGTGTTTGAACCTGGACATAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- AATATTAGATCCCACAAGGTTTACATGGTGTTTGAACCTGGACATAGTGA
CT0007884      <-- ...........................................ATAGTGA
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               351    -    401
RU02211        --> CTTGATGACTCCTCCCTTGTGTTAACCCTGGGTTTTGCATTTCCTAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- CTTGATGACTCCTCCCTTGTGTTAACCCTGGGTTTTGCATTTCCTAAACA
CT0007884      <-- CTTGATGACTCCTCCCTTGTGTTAACCCTGGGTTTTGCATTTCCTAAACA
CT0033987      <-- ..........gactCCTCGTGTTAACCCTGGGTTTTGCATTTCCTAAACA
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ..................................................
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> .TTGATGACTCCTCCCTTGTGTTAACCCTGGGTTTTGCATTTCCTAAACA
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               401    -    451
RU02211        --> CTCGCAGGATCGTTTATGACGCCCAAGAAATCATCTTTGATAGTACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- CTCGCAGGATCGTTTATGACGCCCAAGAAATCATCTTTGATAGTACCAAT
CT0007884      <-- CTCGCAGGATCGTTTATGACGCCCAAGAAATCATCTTTGATAGTACCAAT
CT0033987      <-- CTCGCAGGATCGTTTATGACGCCCAAGAAATCATCTTTGATAGTACCAAT
ET0064291      <-- ...........................AAATCATCTTTGATAGTACCAAT
ET0085221      <-- ........................cgaAAATCATCTTTGATAGTACCAAT
RH30AE147      <-- ............................................ACCAAT
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> CTCGCAGGATCGTTTATGACGCCCAAGAAATCATCTTTGATAGTACCAAT
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               451    -    501
RU02211        --> GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATT-TCTTCAACCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- GCAGA.............................................
CT0007884      <-- ACAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATTATCTTCAACCGAA
CT0033987      <-- GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATTATCTTCAACCTAA
ET0064291      <-- GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATTATCTTCAACCGAA
ET0085221      <-- GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATTATCTTCAACCGAA
RH30AE147      <-- GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATT-TCTTCAACCGAA
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> GCAGAAAATTTCTGTTGCATCCACTCGGGTTCCAATTATCTTCAACCGAA
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               501    -    551
RU02211        --> CTTCGCTATCTTTCTGAATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- CTTCG.............................................
CT0033987      <-- CTTCGCTATCTTTCTGAATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
ET0064291      <-- CTTCGCTATCTTTCTGAATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
ET0085221      <-- CTTCGCTATCTTTCTGAATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
RH30AE147      <-- CTTCGCTATCTTTCTGAATCTAAAC-AGATCCGTCTGATGTTGT-ATAGT
ET0045987      <-- ..........ttctTGAATCTTAACTAGATCCGTCTGATGTTGTTATAGT
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> CTTCGCTATCTTTCTGAATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
CT0006870      --> .................ATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
CT0014986      --> .................ATCTTAAC-AGATCCGTCTGATGTTGT-ATAGT
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               551    -    601
RU02211        --> TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAAT....
ET0064291      <-- TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
ET0085221      <-- TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
RH30AE147      <-- TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
ET0045987      <-- TTGGTCATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTAT.........
CT0006870      --> TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
CT0014986      --> TTGG-CATATCACCAGACTGAAACTCCATATCATCCGGTATCAAATGGTT
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               601    -    651
RU02211        --> CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAGCCCA-TCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................  Control
CT0029332      <-- ..................................................  Control
CT0045883      <-- ..................................................  Control
ET0092002      <-- ..................................................  Ethylene
CT0007884      <-- ..................................................  Control
CT0033987      <-- ..................................................  Control
ET0064291      <-- CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAACCCA-TCTTG  Ethylene
ET0085221      <-- CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAACCCA-TCTTG  Ethylene
RH30AE147      <-- CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAGCCCA-TCCTG  WaterDS
ET0045987      <-- CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAACCCAATCTTG  Ethylene
CT0031403      <-- ..................................................  Control
CT0067133      --> ..................................................  Control
CT0059137      --> ..................................................  Control
CT0006870      --> CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAGCCCA-TCTTG  Control
CT0014986      --> CGAAACAAAGATTTGAACCGGACCAGCCTCAGCAAAAAAGCCCA-TCTTG  Control
CT0065797      --> ..................................................  Control
CT0046451      --> ..................................................  Control

               651    -    701
RU02211        --> TTCACCATTGTAACCACGGCTTCCAAGATCTCTCCTTTAAATGGTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- TTCACCATTGTAACCACGGCTTCCAAGAT.....................
ET0085221      <-- TTCACCATTGTAACCACGGCTTCCAAGAT.....................
RH30AE147      <-- TTCACCATTGTAACCACGGCTTCCAAGATCTCTCCTTTAAATGGTCTGAA
ET0045987      <-- TTCACCATTGTAACCACGGCTTCCAAGATCTCTCCCTTAAATGGTCTGAA
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> TTCACCATTGTAACCACGGCTTCCAAGATCTCTCCTTTAAATGG......
CT0014986      --> TTCACCATTGTAACCACGGCTTCCAAGATCTCTCCTTTAAATGG......
CT0065797      --> ......ATTGTAACCACGGCTTCCAAGATCTCTCCCTTAAATGGTCTGAA
CT0046451      --> ..................................................

               701    -    751
RU02211        --> AACAACACACTGATACTTGACTGGAAATGAAACAAACCCTGTGCCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- AACAACACACTGATACTTGACTGGAAACGAAACAAACCCTGTGCCATCAC
ET0045987      <-- AACAACACACTGATACTTGACTGGAAATGAAACAAACCCTGTGCCATCAC
CT0031403      <-- ...........................................CCATCAC
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> AACAACACACTGATACTTAACTGGAAATGAAACAAACCCTGTGCCATCAC
CT0046451      --> ..................................................

               751    -    801
RU02211        --> GAATCAGCCCTTTTCCGATGTTCTCAA-TCCCCGTTATGGCAACCACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- GAATCAGCCCTTTTCCGATGTTCTCAA-TCCCTGTTATGGCAACCACAAA
ET0045987      <-- GAATCAGCCCTTTTCC..................................
CT0031403      <-- GAATCAGCCCTTTTCCGATGTTCTCAA-TCCCCGTTATGGCAACCACAAA
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> GAATCAGCCCTTTTCCGATGTTCTCAAATCCCCGTTATG...........
CT0046451      --> ..................................................

               801    -    851
RU02211        --> CCCATGTTGGCCACTGCAAGTCCCTTCAACATCTTTCATGAGCTTGGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- CCCATGTTGGCCACTGCAAGTCCCTTCAACATCTTTCATGAGCTTGGCTA
ET0045987      <-- ..................................................
CT0031403      <-- CCCATGTTGGCCACTGCAAGTCCCTTCAACATCTTTCATGAGCTTGGCTA
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               851    -    901
RU02211        --> CCAAATTCTCCCGGAGATTGCGGCCAAAGTGACGAGGGTGAAGCTGCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- CGAGATTCTCCCGGAGATTGCGGCCAAAGTGACGAGGGTGAAGCTGCATG
ET0045987      <-- ..................................................
CT0031403      <-- CCAAATTCTCCCGGAGATTGCGGCCAAAGTGACGAGGGT...........
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................................

               901    -    951
RU02211        --> TTCCTCTCCAAGACTATATGGAAAAACATTTTCTTCTTTTTTTGGCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- TTCCTCTCCAAGACTATATGGAAAAACATTTTCTTCTTTTTTTGGCAGAA
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> ..................................aagagcgtggagactt

               951    -   1001
RU02211        --> ATTCCAAACTGGTGGAAACAAGGTTTATGCCAAATAGAGAGGGGTTTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- ATTCCAAACTGGTGGAAACAAGGTTTATGCCAAATAGAGAGGGGTTTAGG
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> aacCCAAACTGGTGGAAACAAGGTTTATGCCAAATAGAGAGGGGTTTAGG

               1001   -   1051
RU02211        --> GATTTGGTGTCCCTATATGAACGGGTCGACGGCGCGTGTATCGGAGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- GATTTGGTGTCCCTATATGAACGGGTCGACGGCGCGTGTATCGGAGAAGT
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> GATTTGGTGTCCCTATATGAACGGGTCGACGGCGCGTGTATCGGAGAAGT

               1051   -   1101
RU02211        --> GGAGCGACGCGGGTGGGCTTTGGCGAGAATCACCGGGGGTTGTTGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- GGAGCGACGCGGGTGGGCTTTGGCGAGAATCACCGGGGGTTGTTGGCAAG
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> GGAGCGACGCGGGTGGGCTTTGGCGAGAATCACCGGGGGTTGTTGGCAAG

               1101   -   1151
RU02211        --> GGCAGATCGACCAGGGCGGCACCTGGGAAGGAGAGATCGGATCCGTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000387      <-- ..................................................
CT0029332      <-- ..................................................
CT0045883      <-- ..................................................
ET0092002      <-- ..................................................
CT0007884      <-- ..................................................
CT0033987      <-- ..................................................
ET0064291      <-- ..................................................
ET0085221      <-- ..................................................
RH30AE147      <-- GGCAGATCGACCAGGGCGGCACCTGGGAAGGAGAGATCGGATCCGTCTGT
ET0045987      <-- ..................................................
CT0031403      <-- ..................................................
CT0067133      --> ..................................................
CT0059137      --> ..................................................
CT0006870      --> ..................................................
CT0014986      --> ..................................................
CT0065797      --> ..................................................
CT0046451      --> GGCAGATCGACCAGGGCGGCACCTGGGAAGGAGAGATC............

               1151   -   1201
RU02211        --> TG
                   ~~
CT0000387      <-- ..
CT0029332      <-- ..
CT0045883      <-- ..
ET0092002      <-- ..
CT0007884      <-- ..
CT0033987      <-- ..
ET0064291      <-- ..
ET0085221      <-- ..
RH30AE147      <-- TG
ET0045987      <-- ..
CT0031403      <-- ..
CT0067133      --> ..
CT0059137      --> ..
CT0006870      --> ..
CT0014986      --> ..
CT0065797      --> ..
CT0046451      --> ..