SNPs of unigene RU02848
               1      -     51
RU02848        --> CTCCACAGACTAAGTAGTGCTTTGAGAGAGAGAGAGAGAAGAGAAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- CTCCACAGACTAAGTAGTGCTTTGAGAGAGAGAGAGAGAAGAGAAGAGGA
ET0087460      <-- CTCCACAGACTAAGTAGTGCTTTGAGAGAGAGAGAGAGAAGAGAAGAGGA
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               51     -    101
RU02848        --> GAGCTCAACTTTGAAGTTCAAAGCTTTCTTCTATGGCTTCTTGGGTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- GAGCTCAACTTTGAAGTTCAAAGCTTTCTTCTATGGCTTCTTGGGTGCTT
ET0087460      <-- GAGCTCAACTTTGAAGTTCAAAGCTTTCTTCTATGGCTTCTTGGGTGCTT
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               101    -    151
RU02848        --> TTACCGGTTGCTCCGGTAACCAGTCGATGCCTGGTGGCTCCGGTGAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- TTACCGGTTGCTCCGGTAACCAGTCGATGCCTGGTGGCTCCGGTGAGGTC
ET0087460      <-- TTACCGGTTGCTCCGGTAACCAGTCGATGCCTGGTGGCTCCGGTGAGGTC
CT0039682      <-- .........................................GGTGAGGTC
CT0059248      <-- .........................................GGTGAGGTC
CT0073770      <-- .................................................C
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               151    -    201
RU02848        --> CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGACACAAATGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGACACAAATGTGT
ET0087460      <-- CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGACACAAATGTGT
CT0039682      <-- CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGAGACAAATGTGT
CT0059248      <-- CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGAGACAAATGTGT
CT0073770      <-- CCAGAGGTCCTCCTCCATCTGTGTTCGATCGTCTCTCGAGACAAATGTGT
CT0045311      <-- .....................TGTTCGATCGTCTCTCGACACAAATGTGT
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> .............................CGTCTCTCGACACAAATGTGT
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               201    -    251
RU02848        --> CTGACATGAGTGTAAAAGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- CTGACATGAGTGTAAAAGCTCCAAAAGGGTTGTTTCCACCTGAACCTG..
ET0087460      <-- CTGACATGAGTGTAAAAGCTCCAAAAGGGTTGTTTCCACCTGAACCTG..
CT0039682      <-- CTGACATGAGTGTAAATGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
CT0059248      <-- CTGACATGAGTGTAAATGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
CT0073770      <-- CTGACATGAGTGTAAATGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
CT0045311      <-- CTGACATGAGTGTAAAAGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> CTGACATGAGTGTAAAAGCTCCAAAAGGGTTGTTTCCACCTGAACCTGAA
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               251    -    301
RU02848        --> CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGACTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGC
CT0059248      <-- CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGC
CT0073770      <-- CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGC
CT0045311      <-- CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGACTTGC
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> CACTATCGAGGGCCGAAGCTGAAAGTGGCTATTATTGGAGCTGGACTTGC
CT0051689      --> .......................AGTGGCTATTATTGGAGCTGGACTTGC
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               301    -    351
RU02848        --> AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCACGAGGTGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCACGAGGTGGATA
CT0059248      <-- AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCACGAGGTGGATA
CT0073770      <-- AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCACGAGGTGGATA
CT0045311      <-- AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATA
RH18R76        <-- .........AACAGCTGTTGAGCTTTGGGATCAAGCCCATGAGGTGGATA
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATA
CT0051689      --> AGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATA
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               351    -    401
RU02848        --> TCTACGAGTCAAGGCCTTTCATTGGTGGAAAAGTAGGCTCTTTTGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- TCTACGAGTCAAGGCCTTTCATTGG.........................
CT0059248      <-- TCTACGAGTCAAGGCCTTTCATTGG.........................
CT0073770      <-- TCTACGAGTCAAGGCCTTTCATTGG.........................
CT0045311      <-- TCTACGAGTCAAGGCCTTTCATTGGTGGAAAAGTAGGCTCTTTTGTTGAT
RH18R76        <-- TCTACGAGTCAAGGCCTTTCATTGGTGAAAAAGTAGGCTCTTTTGTTGAT
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> TCTACGAGTCAAGGCCTTTCATTGGTGGAAAAGTAGGCTCTTT.......
CT0051689      --> TCTACGAGTCAAGGCCTTTCATTGGTGGAAAAGTAGGCTCTTTTGTTGAT
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               401    -    451
RU02848        --> AAACGTGGAAATCACATTGAAATGGGACTCCACGTATTCTTTGGTTGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- AAAC..............................................
RH18R76        <-- AAACGTGGAAATCACATTGAAATGGGACTCCACGTATTCTTTGGTTGTTA
RH03B33        <-- .........................................TGGTTGTTA
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> AAACGTGGAA........................................
CT0055570      --> ...........................CTCCACGTATTCTTTGGTTGTTA
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               451    -    501
RU02848        --> CAGTAACCTTTTCCGATTAATGAAAAAGGTGGGTGCAGAAGAAAATCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- CAGTAACCTTTTCCGATTAATGAAAAAGGTGGGTGCAGAAGAAAATCTAC
RH03B33        <-- CAGTAACCTTTTCCGATTAATGAAAAAGGTGGGTGCAGAAGAAAATCTAC
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> CAGTAACCTTTTCCGATTAATGAAAAAGGTGGGTGCAGAAGAAAATCTAC
ET0084320      --> ...........................................AATCTAC
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               501    -    551
RU02848        --> TTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- TTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGT
RH03B33        <-- TTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGT
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> TTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGT
ET0084320      --> TTGTGAAGGATCATACTCACACTTTTGTAAATAGAGGGGGTCAAATTGGT
ET0060757      --> ..............................ATAGAGGGGGTCAAATTGGT
CT0060310      --> ...............................TAGAGGGGGTCAAATTGGT
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               551    -    601
RU02848        --> GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
RH03B33        <-- GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
ET0084320      --> GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
ET0060757      --> GAACTTGATTTT-CGATTTCCAATTGGAGCCCCC-ATACATGGGATTCTT
CT0060310      --> GAACTTGATTTTTCGATTTCCAATTGGAGCCCCCCATACATGGGATTCTT
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               601    -    651
RU02848        --> GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
RH03B33        <-- GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
ET0084320      --> GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGA..............
ET0060757      --> GCGTTTTT-ATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
CT0060310      --> GCGTTTTTTATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
CT0118225      --> ............TACAAATCAGATCAAGACTTATGATAAAGCAAGAAATG
ET0117014      --> ........................................GCAAGAAATG
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               651    -    701
RU02848        --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
RH03B33        <-- CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
ET0137011      <-- ................................cgTCTGGTTGATCCAGAT
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGG.................
ET0084320      --> ..................................................
ET0060757      --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
CT0060310      --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
CT0118225      --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
ET0117014      --> CATTGGCTCTTGCATTGAGTCCTGTCGTCAGGGCTCTGGTTGATCCAGAT
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               701    -    751
RU02848        --> GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
RH03B33        <-- GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
ET0137011      <-- GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> G.................................................
CT0060310      --> GGAGCATTGAGTGATGTGCGGTAATTTGGATAGCATAAGCTTCTCAGtat
CT0118225      --> GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
ET0117014      --> GGAGCATTGAGTGATGTGCGG-AATTTGGATAGCATAAGCTTCTCAGATT
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               751    -    801
RU02848        --> GGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGAT
RH03B33        <-- GGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGAT
ET0137011      <-- GGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGAT
ET0066241      <-- ......................................AGAATGTGGGAT
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ttgg..............................................
CT0118225      --> GGTTCATGTCCAAAGGTGGCACACGCACGA....................
ET0117014      --> GGTTCATGTCCAAAGGTGGCACACGCACGAGTATCCAGAGAATGTGGGA.
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               801    -    851
RU02848        --> CCTGTTGCATACGCTCTTGGGTTCATTGACTGTGACAACATCAGCGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................  Ethylene
ET0087460      <-- ..................................................  Ethylene
CT0039682      <-- ..................................................  Control
CT0059248      <-- ..................................................  Control
CT0073770      <-- ..................................................  Control
CT0045311      <-- ..................................................  Control
RH18R76        <-- CCTGTTGCATACGCTCTTGGGTTCATTGACTGTGATAACATCAGTGCTCG  WaterDS
RH03B33        <-- CCTGTTGCATACGCTCTTGGGTTCATTGACTGTGATAACATCAGTGCTCG  WaterDS
ET0137011      <-- CCTGTTGCGTACGCTCTTGGGTTCATTGACTGTGACAACATCAGCGCTCG  Ethylene
ET0066241      <-- CCTGTTGCGTACGCTCTTGGGTTCATTGACTGTGACAACATCAGCGCTCG  Ethylene
CT0000400      <-- ..................................................  Control
CT0003261      <-- ..................................................  Control
CT0035288      <-- ..................................................  Control
CT0069264      <-- ..................................................  Control
CT0016082      <-- ..................................................  Control
CT0111614      <-- ..................................................  Control
CT0113107      <-- ..................................................  Control
CT0113832      <-- ..................................................  Control
CT0114233      <-- ..................................................  Control
CT0114721      <-- ..................................................  Control
ET0065837      <-- ..................................................  Ethylene
ET0121467      <-- ..................................................  Ethylene
ET0054359      <-- ..................................................  Ethylene
ET0088919      <-- ..................................................  Ethylene
ET0109013      <-- ..................................................  Ethylene
ET0116202      <-- ..................................................  Ethylene
ET0114911      <-- ..................................................  Ethylene
CT0116909      <-- ..................................................  Control
ET0127787      <-- ..................................................  Ethylene
CT0113319      <-- ..................................................  Control
CT0087503      <-- ..................................................  Control
CT0012556      <-- ..................................................  Control
ET0093482      --> ..................................................  Ethylene
CT0051689      --> ..................................................  Control
CT0055570      --> ..................................................  Control
ET0084320      --> ..................................................  Ethylene
ET0060757      --> ..................................................  Ethylene
CT0060310      --> ..................................................  Control
CT0118225      --> ..................................................  Control
ET0117014      --> ..................................................  Ethylene
RH55CC6        --> ..........ACGCTCTTGGGTTCATTGACTGTGACAACATCAGCGCTCG  WaterDS
CT0111673      --> ..................................................  Control
CT0039162      --> ..................................................  Control
CT0041211      --> ..................................................  Control
CT0055104      --> ..................................................  Control
CT0067340      --> ..................................................  Control
ET0057969      --> ..................................................  Ethylene
CT0005602      --> ..................................................  Control
CT0110828      --> ..................................................  Control
CT0110991      --> ..................................................  Control
CT0112095      --> ..................................................  Control
CT0112217      --> ..................................................  Control
CT0115961      --> ..................................................  Control
ET0120490      --> ..................................................  Ethylene
CT0108241      --> ..................................................  Control
CT0015238      --> ..................................................  Control
CT0059828      --> ..................................................  Control
ET0017371      --> ..................................................  Ethylene
CT0085290      --> ..................................................  Control
ET0078634      --> ..................................................  Ethylene
CT0115146      --> ..................................................  Control
ET0115409      --> ..................................................  Ethylene
ET0118238      --> ..................................................  Ethylene
CT0021483      --> ..................................................  Control
CT0053159      --> ..................................................  Control
CT0015717      --> ..................................................  Control

               851    -    901
RU02848        --> TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCC
RH03B33        <-- TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCC
ET0137011      <-- TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATC..
ET0066241      <-- TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCC
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> TTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCC
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               901    -    951
RU02848        --> TGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- TGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATC
RH03B33        <-- TGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATC
ET0137011      <-- ..................................................
ET0066241      <-- TGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATC
CT0000400      <-- ............................................CCCATC
CT0003261      <-- ............................................CCCATC
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> TGCTTCGCATGCTCAAGGGTTCTCCTGATGTTTACTTGAGTGGACCCATC
CT0111673      --> .................................ACTTGAGTGGACCCATC
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               951    -   1001
RU02848        --> AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
RH03B33        <-- AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
ET0137011      <-- ..................................................
ET0066241      <-- AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0000400      <-- AGACAGTATATCATTGAC-GAAGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0003261      <-- AGACAGTATATCATTGACGAAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0111673      --> AGACAGTATATCATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0039162      --> ............ATTGACGAAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0041211      --> ............ATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0055104      --> ............ATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
CT0067340      --> ............ATTGAC-AAGGGGGGAAGGTTTCATCTTAGGTGGGGAT
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1001   -   1051
RU02848        --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
RH03B33        <-- GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
ET0137011      <-- ..................................................
ET0066241      <-- GTAGAGAGATATTG....................................
CT0000400      <-- GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0003261      <-- GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0111673      --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0039162      --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0041211      --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0055104      --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
CT0067340      --> GTAGAGAGATATTGTATGATAAATCTGCTGATGGGGAAACTTATGTCGCA
ET0057969      --> .......................TCTGCTGATGGGGAAACTTATGTCGCA
CT0005602      --> .........................TGCTGATGGGGAAACTTATGTCGCA
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1051   -   1101
RU02848        --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
RH03B33        <-- GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- GGCCTTGCAATGTCTAAGGCTAC...........................
CT0003261      <-- GGCCTTGCAATGTCTAAGGCTAC...........................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> GGCCTTGCCATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
CT0111673      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAAACTGTGAAAGCAGATG
CT0039162      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAAACTGTGAAAGCAGATG
CT0041211      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
CT0055104      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
CT0067340      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
ET0057969      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
CT0005602      --> GGCCTTGCAATGTCTAAGGCTACTAATAAGCAAA-CTGTGAAAGCAGATG
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1101   -   1151
RU02848        --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
RH03B33        <-- CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0111673      --> CCTATGTTGCAGCATGCGATGTGCCT........................
CT0039162      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0041211      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0055104      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0067340      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
ET0057969      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0005602      --> CCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCC
CT0110828      --> ..........................GGAATCAAGAGATTGCTTCCGTCC
CT0110991      --> ..........................GGAATCAAGAGATTGCTTCCGTCC
CT0112095      --> ..........................GGAATCAAGAGATTGCTTCCGTCC
CT0112217      --> ..........................GGAATCAAGAGATTGCTTCCGTCC
CT0115961      --> ..........................GGAATCAAGAGATTGCTTCCGTCC
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1151   -   1201
RU02848        --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
RH03B33        <-- CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
CT0111673      --> ..................................................
CT0039162      --> CAG...............................................
CT0041211      --> CAGTG.............................................
CT0055104      --> CAGTG.............................................
CT0067340      --> CAGTG.............................................
ET0057969      --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
CT0005602      --> CAGTGGAGGG-AATGGG-ATTTTT..........................
CT0110828      --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
CT0110991      --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
CT0112095      --> CAGTGGAGGG-AATGGG-ATTTTTT-CAATAATATCTATGAACTAGTTGG
CT0112217      --> CAGTGGAGGG-AATGGG-ATTTTTTTCAATAATATCTATGAACTAGTTGG
CT0115961      --> CAGTGGAGGGGAATGGGGATTTTTTTCAATAATATCTATGAACTAGTTGG
ET0120490      --> .AGTGGAGGG-AATGGG-ATTTTTTTCAATAATATCTATGAACTAGTTGG
CT0108241      --> ...............ggatTTTTTT-CAATAATATCTATGAACTAGTTGG
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1201   -   1251
RU02848        --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- AGTTCCTGTTGTCACTGT................................
RH03B33        <-- AGTTCCTGTTGTCACTGT................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> AGTTCCTGTTGTCACTGT................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCA......
CT0005602      --> ..................................................
CT0110828      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0110991      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0112095      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0112217      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0115961      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
ET0120490      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0108241      --> AGTTCCTGTTGTCACTGTACAACTTAGATACGATGGCTGGGTCACAGAGA
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1251   -   1301
RU02848        --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0110991      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0112095      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0112217      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0115961      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
ET0120490      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0108241      --> TGCAGGATCTTGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGAT
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1301   -   1351
RU02848        --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ...............................ctATGCTTTGCTGATCTAG
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0110991      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0112095      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0112217      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0115961      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
ET0120490      --> AATCTTCTCTATACTCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0108241      --> AATCTTCTCTATACTCCGGATGCCGTATTTTTCATGCTTTGCTGATCTAG
CT0015238      --> ..............TCCGGATGCCG-ATTTTTCATGCTTTGCTGATCTAG
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1351   -   1401
RU02848        --> CACTTGCTTCTCCAGAAGACTACTACATTGAAGGACAAGGTTCACTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- CACTTGCTTCTCCAGAAGACTACTACATTGAAGGACAAGGTTCACTCCTG
CT0069264      <-- ..................................ACAAGGTTCACTCCTG
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> CACTTGCTT.........................................
CT0110991      --> CACTTGCTT.........................................
CT0112095      --> CACTTGCTTC........................................
CT0112217      --> CACTTGCT..........................................
CT0115961      --> CACTTGC...........................................
ET0120490      --> CACTTGCTTCTCCAGAAGACTACTACATTGAAGGAC..............
CT0108241      --> CACTTGCTTCTCCAGAAGACTACTACATTGAAGGACAAGGTTCAC.....
CT0015238      --> CACTTGCTTCTCCAGAAGACTACTACATTGAAGGACAAGGTTCACTCCTG
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1401   -   1451
RU02848        --> CAATGTGTGTTGACACCAGGTGATCCTTACATGCCTCTACCAAACGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- CAATGTGTGTTGACACCAGGTGATCCTTACATGCCTCTACCAAACGAAGA
CT0069264      <-- CAATGTGTGTTGACACCAGGTGATCCTTACATGCCTCTACCAAATGAAGA
CT0016082      <-- ............ACACCAGGTGATCCTTACATGCCTCTACCAAACGAAGA
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> CAATGTGTGTTGACACCAGGTGATCCTTACATGCCTCTACCAAACGAAGA
CT0059828      --> ..............................cctttctTACCAAACGAAGA
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1451   -   1501
RU02848        --> AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
CT0069264      <-- AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
CT0016082      <-- AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
CT0111614      <-- ...............................tCTTTATTCCCATCATCGC
CT0113107      <-- ...............................tCTTTATTCCCATCATCGC
CT0113832      <-- ...............................tCTTTATTCCCATCATCGC
CT0114233      <-- ...............................tCTTTATTCCCATCATCGC
CT0114721      <-- ................................CTTTATTCCCATCATCGC
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
CT0059828      --> AATTATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
ET0017371      --> ....ATAGCAAAAGTCACGAAACAGGTTTTGGCTTTATTCCCATCATCGC
CT0085290      --> .......................................CCCATCATCGC
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1501   -   1551
RU02848        --> AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0069264      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0016082      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0111614      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0113107      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0113832      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0114233      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0114721      <-- AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
ET0065837      <-- ..............................TCAAAATTGGGCAATCTCTA
ET0121467      <-- ..................................................
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> AAGGCTTAGAAGT.....................................
CT0059828      --> AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
ET0017371      --> AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAA...............
CT0085290      --> AAGGCTTAGAAGTCACTTGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
ET0078634      --> .................TGGTCATCAGTTGTCAAAATTGGGCAATCTCTA
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1551   -   1601
RU02848        --> TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- TATCGTGAAGGACCTG..................................
CT0069264      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
CT0016082      <-- TATCGTGAA.........................................
CT0111614      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
CT0113107      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
CT0113832      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
CT0114233      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
CT0114721      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
ET0065837      <-- TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
ET0121467      <-- .................................CCAGATCAGAAGACACC
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
ET0017371      --> ..................................................
CT0085290      --> TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCAGATCAGAAGACACC
ET0078634      --> TATCGTGAAGGACCTGGTAAAGATCCATTTAGACCA-ATCAGAAGACACC
CT0115146      --> .......AAGGACCTGG-AAAGATCCATTTAGACCAGATCAGAAGACACC
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1601   -   1651
RU02848        --> -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- -AGTGAAAAATTTCTTCCTTGCGGGAT.......................
CT0016082      <-- ..................................................
CT0111614      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
CT0113107      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
CT0113832      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
CT0114233      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
CT0114721      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
ET0065837      <-- -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
ET0121467      <-- TAGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
ET0017371      --> ..................................................
CT0085290      --> -AGTGAAAAATTTCTTCCTTGCGGGATCATA...................
ET0078634      --> -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
CT0115146      --> -AGTGAAAAATTTCTTCCTTGCGGGATCATACACAAAACAAGACTATATA
ET0115409      --> ..............aTCCTTGCTGGATCATACACAAAACAAGACTATATA
ET0118238      --> ..............aTCCTTGCTGGATCATACACAAAACAAGACTATATA
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1651   -   1701
RU02848        --> GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACAAGCTTCTGCCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
CT0113107      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
CT0113832      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
CT0114233      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
CT0114721      <-- GATAGCATGGAAGGGGGCAACTTTATCTGGCAGACGAGCTTCTGCCTATA
ET0065837      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACAAGCTTCTGCCTATA
ET0121467      <-- GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACAAGCTTCTGCCTATA
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> GATAGCATGGAAGGG...................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACAAGCTTCTGCCTATA
CT0115146      --> GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
ET0115409      --> GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
ET0118238      --> GATAGCATGGAAGGGG-CAACTTTATCTGGCAGACGAGCTTCTGCCTATA
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1701   -   1751
RU02848        --> TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- TATGCAATGCT.......................................
CT0113107      <-- TATGCAATGCT.......................................
CT0113832      <-- Ttattgctaattgtctt.................................
CT0114233      <-- TATGCAATGCT.......................................
CT0114721      <-- TATGCAATGCT.......................................
ET0065837      <-- TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
ET0121467      <-- TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
ET0054359      <-- ..................................................
ET0088919      <-- ..................................................
ET0109013      <-- ..................................................
ET0116202      <-- ..................................................
ET0114911      <-- ..................................................
CT0116909      <-- ..................................................
ET0127787      <-- ..................................................
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
CT0115146      --> TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
ET0115409      --> TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
ET0118238      --> TATGCAATGCTGGGGAAGAGTTGGTAGAATTGCGAAAGAAACTTGCATCC
CT0021483      --> ..................................................
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1751   -   1801
RU02848        --> CAAGAGGGGAATACAAAAGCTGCTAATACTACTGATGAGCTGAGTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- CAAGAGGGGAATACAAAAGCT.............................
ET0121467      <-- CAAGAGGGGAATACAAAAGCTGCTAATACTACTGATGAGCTGAGTCTTGT
ET0054359      <-- ......................CTAATACTACTGATGAGCTGAGTCTTGT
ET0088919      <-- ......................CTAATACTACTGATGAGCTGAGTCTTGT
ET0109013      <-- ......................CTAATACTACTGATGAGCTGAGTCTTGT
ET0116202      <-- ......................CTAATACTACTGATGAGCTGAGTCTTGT
ET0114911      <-- ........................AATACTACTGATGAGCTGAGTCTTGT
CT0116909      <-- .............................TACTGATGAGCTGAGTCTTGT
ET0127787      <-- ...............................................TGT
CT0113319      <-- ..................................................
CT0087503      <-- ..................................................
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> CAAGg.............................................
CT0115146      --> CAAGAGGGGAATACAAAAGCTGCTAATACTACTGATGAG...........
ET0115409      --> CAAGAGGGGAATACAAAAGCTGCTAATACTACTGATGAGCTGAGTCTTGT
ET0118238      --> CAAGAGGGGAATACAAAAGCTGCTAATACTACTGATGAGCTGAGTCTTGT
CT0021483      --> .................................................T
CT0053159      --> ..................................................
CT0015717      --> ..................................................

               1801   -   1851
RU02848        --> CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- CTAATACAAAA-TTTTCAT...............................
ET0054359      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
ET0088919      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
ET0109013      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
ET0116202      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
ET0114911      <-- CTAATACAAAAATTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
CT0116909      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
ET0127787      <-- CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
CT0113319      <-- .............TTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
CT0087503      <-- ............................cAGCTCAGAGCCAACCGTCACA
CT0012556      <-- ..................................................
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCG.....
ET0118238      --> CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCG.....
CT0021483      --> CTAATACAAAA-TTTTCATTCATTTGCTAAGCACAGAGCCAACCGTCACA
CT0053159      --> .........................GCTAAGCACAGAGCCAACCGTCACA
CT0015717      --> ..................................................

               1851   -   1901
RU02848        --> ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAAAGACAGTGCACTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0088919      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0109013      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0116202      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0114911      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
CT0116909      <-- ACCTCAAAAAATGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0127787      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
CT0113319      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
CT0087503      <-- ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAGAGACAGTGCACTTTAT
CT0012556      <-- ...........TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAATGACAGTGCACTTTAT
CT0053159      --> ACCTCAAAAA-TGTGGAGTCAGCTGGTGACTTAGAGACAGTGCACTTTAT
CT0015717      --> ...................................GACAGTGCACTTTAT

               1901   -   1951
RU02848        --> CAGTTGCCATTGCAAATGCTTTTACATTTATATGTATAGAAAGATAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0088919      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0109013      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0116202      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0114911      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
CT0116909      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0127787      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
CT0113319      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
CT0087503      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
CT0012556      <-- CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG
CT0053159      --> CAGTTGCCATTGCAAATGCTTTTACATTTATATGTATAGAAAGATAATAG
CT0015717      --> CAGTTGCCATTGCAAATGCTTT-ACATTTATATGTATAGAAAGATAATAG

               1951   -   2001
RU02848        --> TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ..................................................
ET0087460      <-- ..................................................
CT0039682      <-- ..................................................
CT0059248      <-- ..................................................
CT0073770      <-- ..................................................
CT0045311      <-- ..................................................
RH18R76        <-- ..................................................
RH03B33        <-- ..................................................
ET0137011      <-- ..................................................
ET0066241      <-- ..................................................
CT0000400      <-- ..................................................
CT0003261      <-- ..................................................
CT0035288      <-- ..................................................
CT0069264      <-- ..................................................
CT0016082      <-- ..................................................
CT0111614      <-- ..................................................
CT0113107      <-- ..................................................
CT0113832      <-- ..................................................
CT0114233      <-- ..................................................
CT0114721      <-- ..................................................
ET0065837      <-- ..................................................
ET0121467      <-- ..................................................
ET0054359      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATcgtaggggccatcg
ET0088919      <-- TTAATGTAATGCAT-AGTTTTT-ATTTCTTAATGATGAGGGCATGGCTTC
ET0109013      <-- TTAATGTAATGCAT-AGTTTTT-ATTTCTTAATGATGAGGGCATGGCTTC
ET0116202      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC
ET0114911      <-- TTAATGTAATGCATTAGTTTTT-ATTTCTTAATGATGAGGGCATGGCTTC
CT0116909      <-- TTAATGTAATGCAT-AGTTTTTTATT-CTTAATGATGAGGGCATGGCTTC
ET0127787      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC
CT0113319      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC
CT0087503      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC
CT0012556      <-- TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGATGGCATGGCTTC
ET0093482      --> ..................................................
CT0051689      --> ..................................................
CT0055570      --> ..................................................
ET0084320      --> ..................................................
ET0060757      --> ..................................................
CT0060310      --> ..................................................
CT0118225      --> ..................................................
ET0117014      --> ..................................................
RH55CC6        --> ..................................................
CT0111673      --> ..................................................
CT0039162      --> ..................................................
CT0041211      --> ..................................................
CT0055104      --> ..................................................
CT0067340      --> ..................................................
ET0057969      --> ..................................................
CT0005602      --> ..................................................
CT0110828      --> ..................................................
CT0110991      --> ..................................................
CT0112095      --> ..................................................
CT0112217      --> ..................................................
CT0115961      --> ..................................................
ET0120490      --> ..................................................
CT0108241      --> ..................................................
CT0015238      --> ..................................................
CT0059828      --> ..................................................
ET0017371      --> ..................................................
CT0085290      --> ..................................................
ET0078634      --> ..................................................
CT0115146      --> ..................................................
ET0115409      --> ..................................................
ET0118238      --> ..................................................
CT0021483      --> TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATag............
CT0053159      --> TTAATGTAATGCAT-AGTTTTT-ATT-CTTAAaaaaaaa...........
CT0015717      --> TTAATGTAATGCAT-AGTTTTT-ATT-CTTAATGATGAGGGCATGGCTTC

               2001   -   2051
RU02848        --> TTTTT-ACCATTGAAAGCCACAGGAGATTACCATACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085516      <-- ......................................
ET0087460      <-- ......................................
CT0039682      <-- ......................................
CT0059248      <-- ......................................
CT0073770      <-- ......................................
CT0045311      <-- ......................................
RH18R76        <-- ......................................
RH03B33        <-- ......................................
ET0137011      <-- ......................................
ET0066241      <-- ......................................
CT0000400      <-- ......................................
CT0003261      <-- ......................................
CT0035288      <-- ......................................
CT0069264      <-- ......................................
CT0016082      <-- ......................................
CT0111614      <-- ......................................
CT0113107      <-- ......................................
CT0113832      <-- ......................................
CT0114233      <-- ......................................
CT0114721      <-- ......................................
ET0065837      <-- ......................................
ET0121467      <-- ......................................
ET0054359      <-- gcttctttt.............................
ET0088919      <-- TTTTTtact.............................
ET0109013      <-- TTTTT-ACt.............................
ET0116202      <-- TTTTT-Aacc............................
ET0114911      <-- TTTTacc...............................
CT0116909      <-- ......................................
ET0127787      <-- TTTTT-Aaa.............................
CT0113319      <-- TTTTTTACCATT..........................
CT0087503      <-- TTTTT-ACCAaaaaa.......................
CT0012556      <-- TTTTT-ACCAaaaaaa......................
ET0093482      --> ......................................
CT0051689      --> ......................................
CT0055570      --> ......................................
ET0084320      --> ......................................
ET0060757      --> ......................................
CT0060310      --> ......................................
CT0118225      --> ......................................
ET0117014      --> ......................................
RH55CC6        --> ......................................
CT0111673      --> ......................................
CT0039162      --> ......................................
CT0041211      --> ......................................
CT0055104      --> ......................................
CT0067340      --> ......................................
ET0057969      --> ......................................
CT0005602      --> ......................................
CT0110828      --> ......................................
CT0110991      --> ......................................
CT0112095      --> ......................................
CT0112217      --> ......................................
CT0115961      --> ......................................
ET0120490      --> ......................................
CT0108241      --> ......................................
CT0015238      --> ......................................
CT0059828      --> ......................................
ET0017371      --> ......................................
CT0085290      --> ......................................
ET0078634      --> ......................................
CT0115146      --> ......................................
ET0115409      --> ......................................
ET0118238      --> ......................................
CT0021483      --> ......................................
CT0053159      --> ......................................
CT0015717      --> TTTTT-ACCATTGAATGCCACAGGAGATTACCATACCC