Rose Transcriptome Database

               1      -     51
RU02853        --> AAATATTCCAGAAAAAATCTTCAAAAGATTGTTGATTCCAAATAAGGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- AAATATTCCAGAAAAAATCTTCAAAAGATTGTTGATTCCAAATAAGGGGT
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               51     -    101
RU02853        --> GGCGGTATGCCTTTACCTTTTTGGACATGTTATGTGGTAATGAAGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- GGCGGTATGCCTTTACCTTTTTGGACATGTTATGTGGTAATGAAGGAGTT
ET0076403      <-- ...............................................agT
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               101    -    151
RU02853        --> ATGAGAAAAGTTGCCTCAATGCGGTTGCATTTTCTTGCAACAGAAAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ATGAGAAAAGTTGCCTCAATGCGGTTGCATTTTCTTGCAACAGAAAAACG
ET0076403      <-- ATGAGAAA-GTTGCCTCAATGCGGTTGCATTTTCTTGCAACAGAAAAACG
ET0001116      <-- .................AATGCGGTTGCATTTTCTTGCAACAGAAAAACG
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               151    -    201
RU02853        --> ACGACCAGATCAATTTACGGCCCTTGTCAGAAATGTTCCACCAGATCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ACGACCAGATCAATTTACGGCCCTTGTCAGAAATGTTCCACCAGATCCAG
ET0076403      <-- ACGACCAGATCAATTTACGGCCCTTGTCAGAAATGTTCCACCAGATCCAG
ET0001116      <-- ACGACCAGATCAATTTACGGCCCTTGTCAGAAATGTTCCACCAGATCCAG
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               201    -    251
RU02853        --> ATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- TTGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCG
ET0076403      <-- ATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCG
ET0001116      <-- ATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCG
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ......CTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCG
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               251    -    301
RU02853        --> GATCATTATCTTACTCATCAGGTGGTGTGCAATGCCAACAAACTTGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- GATCATTATCTTACTCATCAGGTGGTGTGCAATGCCAACAAACTTGCAAA
ET0076403      <-- GATCATTATCTTACTCATCAGGTGGTGTGCAATGCCAACAAACTTGCAAA
ET0001116      <-- GATCATTATCTTACTCATCAGGTGGTGTGCAATGCCAACAAACTTGCAAA
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> GATCATTATCTTACTCATCAGGTGGTGTGCAATGCCAACAAACTTGCAAA
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               301    -    351
RU02853        --> ATTGGTAAAGAAGAA-GAAAAAAAT-GGATAACTGGCTTGTCTACTACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ATTGGTAAAGAAGAA-GAAAAAAAT-GGATAACTGGCTTGTCTACTACGA
ET0076403      <-- ATTGGTAAAGAAGAA-GAAAAAAAT-GGATAACTGGCTTGTCT.......
ET0001116      <-- ATTGGTAAAGAAaaa...................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ATTGGTAAAGAAGAAAGAAAAAAATAGGATAACTGGCTTGTCTACTACGA
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               351    -    401
RU02853        --> AAACAAACTTGAAAGAAGCAAAACTTCAGTAAGGCCCTTGGTTAAGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- AAACAAACTTGAAAGAAGCAAAACTTCAGTAAGGCCCTTGGTTAAGACTG
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- .............................TAAGGCCCTTGGTTAAGACTG
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> AA................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               401    -    451
RU02853        --> GTTTTCTTGGGCTTTGGGGAAAGAAAGTTGATGCAATTGAACATTATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- GTTTTCTTGGGCTTTGGGGAAAGAAAGTTGATGCAATTGAACATTATCAA
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- GTTTTCTTGGGCTTTGGGGAAAGAAAGTTGATGCAATTGAACATTATCAA
CT0036111      <-- ..................................AATTGAACATTATCAA
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               451    -    501
RU02853        --> TCTGAGATTGACAAATTGAAGAAGGAAATACCTGAAGAAAGGGAGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- TCTGAGATTGACAAATTGAAGAAGGAAATACCTGAAGAAAGGGAGAGAGT
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- TCTGAGATTGACAAATTGAAGAAGGAAATACCTGAAGAAAGGGAGAGAGT
CT0036111      <-- TCTGAGATTGACAAATTGAAGAAGGAAATACCTGAAGAAAGGGAGAGAGT
ET0070332      <-- .....................................AAAGGGAGAGAGT
ET0071108      <-- .....................................AAAGGGAGAGAGT
ET0069473      <-- .................................................T
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> .........................................aagtttaca
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               501    -    551
RU02853        --> TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
CT0036111      <-- TTCAAACGATCCCAACTCCATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0070332      <-- TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0071108      <-- TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0069473      <-- TTCAAACGATCCCAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> aaacgaatacccaAACTCTATCGTGGCAGCTGCCTTTGTTTCCTTTAAAA
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               551    -    601
RU02853        --> GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCA................
CT0036111      <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0070332      <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0071108      <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0069473      <-- GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0129381      <-- .CAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> GCAGATGGGGTGCTGCTGTTTGTGCACAAACTCAGCAATCTAGAAATCCA
ET0131471      --> .............................ACTCAGCAATCTAGAAATCCA
ET0134765      --> .............................ACTCAGCAATCTAGAAATCCA
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               601    -    651
RU02853        --> ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ACTATTTGGTTAACCGAATGGGCTaccaa.....................
ET0070332      <-- ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0071108      <-- ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0069473      <-- ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0129381      <-- ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0131471      --> ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
ET0134765      --> ACTATTTGGTTAACCGAATGGGCTCCAGAGCCACGCGATGTATATTGGCC
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               651    -    701
RU02853        --> AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0071108      <-- AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0069473      <-- AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0129381      <-- AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
CT0001873      <-- ................................TTAAGAGGCTCATCATGG
CT0002997      <-- ................................TTAAGAGGCTCATCATGG
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0131471      --> AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
ET0134765      --> AAATCTGGCTATTCCATATGTAAAACTCACAGTTAAGAGGCTCATCATGG
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               701    -    751
RU02853        --> CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCATGATCCCCATTGCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCATGATCCCCATTGCATT
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTT....................
ET0071108      <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTT....................
ET0069473      <-- CTGTTGCATTCTTTT...................................
ET0129381      <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCA................
CT0001873      <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCATGATCCCCATTGCATT
CT0002997      <-- CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCATGATCCCCATTGCATT
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> CTGTTGCATTCTTTTTCCTCACTTTTCTTTTTCATGA.............
ET0131471      --> CTGTTGCATTCTTTTTCCTCACTTT-CTTTTTCATGATCCCCATTGCATT
ET0134765      --> CTGTTGCATTCTTTTTCCTCACTTTTCTTTTTCATGATCCCCATTGCATT
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               751    -    801
RU02853        --> TGTACAATCTCTTGCAAGCCTGGAGGGACTTGAGAAAGCAGCTCCATTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- TGT...............................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- TGTACAATCTCTTGCAAGCCTGGAGGGACTTGAGAAAGCAGCTCCATTCC
CT0002997      <-- TGTACAATCTCTTGCAAGCCTGGAGGGACTTGAGAAAGCAGCTCCATTCC
CT0134896      <-- ..........CTTGCAAGCCTGGAGGGACTTGAGAAAGCAGCTCCATTCC
ET0075965      <-- ..........................................TCCATTCC
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> TGTACAATCTCTTGCAAGCCTGGAGGG.......................
ET0134765      --> TGTACAATCTCTTGCAAGCCTGGAGG........................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               801    -    851
RU02853        --> T-AAAG-CCCATTGTT-GAAGTGAAGTTCATTAAGTCAGTCATTACAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- T-AAAG-CCCATTGTT-GAAGTGAAG........................
CT0002997      <-- T-AAAG-CCCATTGTT-GAAGTGAAG........................
CT0134896      <-- T-AAAG-CCCATTGTT-GAAGTGAAGTTCATTAAGTCAGTCATTACAGGC
ET0075965      <-- TTAAAGACCCATTGTTTGAAGTGAAGTTCATTAAGTCAGTCATTACAGGC
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               851    -    901
RU02853        --> TTTCTACCTGGGATCGCACTGAAGTTGTTTCTGA-ATTTTT-G-CCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- TTTCTACCTGGGATCGCACTGAAGTTGTTTCTGA-ATTTTT-G-CCAACC
ET0075965      <-- TTTCTACCTGGGATCGCACTGAAGTTGTTTCTGATATTTTTTGTCCAACC
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               901    -    951
RU02853        --> ATATTGATGATCATGGCTAAATTTGAGGGG-TATACATCTCTGTCTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ATATTGATGATCATGGCTAAATTTGAGGGGGTATACATCTCTGTCTTCTC
ET0075965      <-- ATATTGATGATCATGGCTAAATTTGAGGGG-TATACATCTCTGTCTTCTC
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               951    -   1001
RU02853        --> TTGAGAGGAGAGCAGCATCTAGATACTATCTCTTCACTTTGGTGAATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- TTGAGAGGAGAGCAGCATCTAGATACTATCTCTTCACTTTGGTGAATGTA
ET0075965      <-- TTGAGAGGAGAGCAGCATCTAGATACTATCTCTTCACTTTGGT.......
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ........AGAGCAGCATCTAGATACTATCTCTTCACTTTGGTGAATGTA
CT0076407      --> ........AGAGCAGCATCTAGATACTATCTCTTCACTTTGGTGAATGTA
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1001   -   1051
RU02853        --> TTCCTTGGTAGCATTATAGCTGGATCGGCACTTGAACAGCTAAAATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- TTCCTTGGTAGCATTATAGCTGGATCGGCACTTGAACAGCTAAAATCTTT
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> TTCCTTGGTAGCATTATAGCTGGATCGGCACTTGAACAGCTAAAATCTTT
CT0076407      --> TTCCTTGGTAGCATTATAGCTGGATCGGCACTTGAACAGCTAAAATCTTT
CT0101352      --> ...............................................TTT
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1051   -   1101
RU02853        --> CATACACCAATCACCATCTGACATTCCAGTGACACTTGGCACTGCAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> CATACACCAATCACCATCTGACATTCCAGTGACACTTGGCACTGCAGTCC
CT0076407      --> CATACACCAATCACCATCTGACATTCCAGTGACACTTGGCACTGCAGTCC
CT0101352      --> CATACACCAATCACCATCTGACATTCCAGTGACACTTGGCACTGCAGTCC
ET0039341      --> .................CTGACATTCCAGTGACACTTGGCACTGCAGTCC
CT0136728      --> ....................ACATTCCAGTGACACTTGGCACTGCAGTCC
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1101   -   1151
RU02853        --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- .ATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
CT0084707      <-- .....................TAACATATATAATGGTTGATGGGTGGGCT
CT0092124      <-- .................................................T
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
CT0076407      --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
CT0101352      --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
ET0039341      --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
CT0136728      --> CATTAAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGGTGGGCT
ET0085838      --> ...................................GTTGATGGGTGGGCT
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1151   -   1201
RU02853        --> GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
CT0084707      <-- GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
CT0092124      <-- GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> GGTATCGCTGCAGAGAT.................................
CT0076407      --> GGTATCGCTGCAGAGAT.................................
CT0101352      --> GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
ET0039341      --> GGTATCGCTGCAGAGATCTTGATGTTGAAGCCACTCATTATATATCACTT
CT0136728      --> GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
ET0085838      --> GGTATCGCTGCAGAGATCTTGATGTTGAAACCGCTCATTATATATCACTT
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1201   -   1251
RU02853        --> GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
CT0084707      <-- GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
CT0092124      <-- GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGGGAGGAGGCAATG
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
ET0039341      --> GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
CT0136728      --> GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
ET0085838      --> GAAGAATACCTTCCTGGTAAAGACTGATAAGGACAGGG-AGGAGGCAATG
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1251   -   1301
RU02853        --> GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTCGTATACAGCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTC.............
CT0084707      <-- GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTCGTATACAGCTTTA
CT0092124      <-- GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTCGTATACAGCTTTA
CT0124089      <-- .............................................CTTTA
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> GATCCAGGAAGTATTGGTTTCAACACTGGGG...................
ET0039341      --> GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTCGTATACAGCTTTA
CT0136728      --> GATCCAGGAAGTATTGGTTCCAACACTGGGGAGCCTCGTATACAGCTTTA
ET0085838      --> GATCCAGGAAGTATTGGTTTCAACACTGGGGAGCCTCGTATACAGCTTTA
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1301   -   1351
RU02853        --> TATCTTACTGGGCCTTGTATATGCTACAGTGACACCAGTTTTACTTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- TATCTTACTGGGCCTTGT................................
CT0092124      <-- TATCTTACTGGGCCTTGTATATGCTACAGTGACACCAGTTTTACTTCCAT
CT0124089      <-- TATCTTACTGGGCCTTGTATATGCTACAGTGACACCAGTTTTACTTCCAT
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> TATCTTACT.........................................
ET0085838      --> TATCTTACTGGGCCTTGTATATGCTACAGTGACACCAGTTTTACT-CCAT
ET0127808      --> ....................................AGTTTTACTTCCAT
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1351   -   1401
RU02853        --> TCATAATTGTTTTCTTTGGCCTGGCTTATGTTGTGTTCCGTCATCAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- TCATAATTGTTTTCTTTGGCCTGGCTTATGTTGTGTTCC...........
CT0124089      <-- TCATAATTGTTTTCTTTGGCCTGGCTTATGTTGTGTTCCGTCATCAGATC
ET0064113      <-- ...............................................ATC
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> TCATAATTGTTTTCTTTGGCCTGGCTT.......................
ET0127808      --> TCATAATTGTTTTCTTCGGCCTGGCTTATGTTGTGTTCCGTCATCAGATC
ET0138709      --> ..............................TTGTGTTCCGTCATCAGATC
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1401   -   1451
RU02853        --> ATAAATGTTTACATCCAGGAATATGAAAGTGCTGCAGCATACTGGCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ATAAATGTTTACATCCAGGAATATGAAAGTGCTGCAGCATACTGGCCTGA
ET0064113      <-- ATAAATGTTTACATCCAGGAATATGAAAGTGCTGCAGCATACTGGCCTGA
CT0006405      <-- ..........................AAGTGCTGCAGCATACTGGCCTGA
CT0066753      <-- ..........................AAGTGCTGCAGCATACTGGCCTGA
CT0069990      <-- ..........................AAGTGCTGCAGCATACTGGCCTGA
CT0076616      <-- ..........................AAGTGCTGCAGCATACTGGCCTGA
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ATAAATGTTTACAACCAGCAATATGAAAGTGCTGCAGCATACTGGCCTGA
ET0138709      --> ATAAATGTTTACATCCAGGAATATGAAAGTGCTGCAGCATACTGGCCTGA
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1451   -   1501
RU02853        --> TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
ET0064113      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
CT0006405      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
CT0066753      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
CT0069990      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
CT0076616      <-- TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> TGTCCATGGTCGCATTCTGTCTGCATTGCTTATCTCTCAACTGGTTCTAT
ET0138709      --> TGTCCATGGTCGCATTCTGTCTGCATTGTTTATCTCTCAACTGGTTCTAT
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1501   -   1551
RU02853        --> TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- TGGGATTGTTGAGTACC.................................
ET0064113      <-- TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATT.......
CT0006405      <-- TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
CT0066753      <-- TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
CT0069990      <-- TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
CT0076616      <-- TGGGATTGTTGAGTACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
ET0000288      <-- .................AAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> TGGGATTGTTGAGTACCAAAAA............................
ET0138709      --> TGGGATTGTTGAGTACCAAAAA-GCTGCTCAGTCTACACCATTTCTTCTT
RH23Z102       --> ..............ACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
RH29AE14       --> ..............ACCAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
CT0115404      --> ...............caAAAAAAGCTGCTCAGTCTACACCATTTCTTCTT
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1551   -   1601
RU02853        --> GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
CT0066753      <-- GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
CT0069990      <-- GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
CT0076616      <-- GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
ET0000288      <-- GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
RH23Z102       --> GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
RH29AE14       --> GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
CT0115404      --> GCACTTCCAGTATTGACCATAGCGTTCTATAAGTATTGCCAAGGTCGTTT
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1601   -   1651
RU02853        --> TGAACCTGCATTTGTTAGATATCCATTACAGGAAGCAAGGATGAAAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- TGAACCTGCATT......................................
CT0066753      <-- TGAACCTGCATT......................................
CT0069990      <-- TGAACCTGCATT......................................
CT0076616      <-- TGAACCTGCATT......................................
ET0000288      <-- TGAACCTGCATTTGTTAGATATCCATTACAGGAAGCAAGGATGAAAGATA
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> TGAA..............................................
RH23Z102       --> TGAACCTGCATTTGTTAGATATCCATTACAGGAAGCAAGGATGAAAGATA
RH29AE14       --> TGAACCTGCATTTGTTAGATATCCATTACAGGAAGCAAGGATGAAAGATA
CT0115404      --> T.................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1651   -   1701
RU02853        --> CTCTGGAACAAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- CTCTGGAACAAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAA
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> CTCTGGAACAAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAA
RH29AE14       --> CTCTGGAACAAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAA
CT0115404      --> ..................................................
CT0085064      --> .........AAGTAAGAGAACCAAACTTGAACTTGAAAGGCTACCTCCAA
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1701   -   1751
RU02853        --> AGCGCATATGTCCATCCAGTTTTTAAAGAGTGCGATGAAGATGATGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- AGCGCATATGTCCATCCAGTTT............................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> AGCGCATATGTCCATCCAGTTTTTAAAGAGTGCGATGAAGATGATGATGA
RH29AE14       --> AGCGCATATGTCCACCCAGTTTTTAAAGAGTGCGATGAAGATGATGATGA
CT0115404      --> ..................................................
CT0085064      --> AGCGCATATGTCCATCCAGTTTTTAAAGAGTGCGATGAAGATGATGATGA
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1751   -   1801
RU02853        --> TGATGACCATTACTCGTTTGAAAAGTATGAAAATGAGAGCGTGACGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> TGATGACCATTACTCGTTTGAAAAGTATGAAAATGAGAGCGTGACGACTG
RH29AE14       --> TGATGACCATTACTCGTTTGAAAAGTATGAAAATGAGAGCGTGACGACTG
CT0115404      --> ..................................................
CT0085064      --> TGATGACCATTACTCGTTTGAAAAGTACGAAAATGAGAGCGTGACGACTG
CT0083445      --> ..............CGTTTGAAAAGTACGAAAATGAGAGCGTGACGACTG
CT0045371      --> ............................................CGACTG
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1801   -   1851
RU02853        --> TGGCCACAAAACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- .........AACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
ET0057932      <-- ......................................acgctcgacATG
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> TGGCCACAAAACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
RH29AE14       --> TGGCCACAAAACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
CT0115404      --> ..................................................
CT0085064      --> TGGCCACA..........................................
CT0083445      --> TGGCCACAAAACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
CT0045371      --> TGGCCACAAAACGCCAATCCCGGCGGAACACCCCGGTGCCTAGCAGAATG
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1851   -   1901
RU02853        --> ACTGGTGGATCCACACCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................  WaterDS
ET0076403      <-- ..................................................  Ethylene
ET0001116      <-- ..................................................  Ethylene
CT0080362      <-- ..................................................  Control
CT0036111      <-- ..................................................  Control
ET0070332      <-- ..................................................  Ethylene
ET0071108      <-- ..................................................  Ethylene
ET0069473      <-- ..................................................  Ethylene
ET0129381      <-- ..................................................  Ethylene
CT0001873      <-- ..................................................  Control
CT0002997      <-- ..................................................  Control
CT0134896      <-- ..................................................  Control
ET0075965      <-- ..................................................  Ethylene
ET0091644      <-- ..................................................  Ethylene
CT0084707      <-- ..................................................  Control
CT0092124      <-- ..................................................  Control
CT0124089      <-- ..................................................  Control
ET0064113      <-- ..................................................  Ethylene
CT0006405      <-- ..................................................  Control
CT0066753      <-- ..................................................  Control
CT0069990      <-- ..................................................  Control
CT0076616      <-- ..................................................  Control
ET0000288      <-- ..................................................  Ethylene
ET0006003      <-- ACTGGTGGATCCACACCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  Ethylene
ET0057932      <-- ACTGGTGGATCCACACCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  Ethylene
ET0121573      <-- ..................................................  Ethylene
CT0062331      <-- ..................................................  Control
CT0131951      --> ..................................................  Control
ET0099267      --> ..................................................  Ethylene
ET0131471      --> ..................................................  Ethylene
ET0134765      --> ..................................................  Ethylene
CT0041199      --> ..................................................  Control
CT0076407      --> ..................................................  Control
CT0101352      --> ..................................................  Control
ET0039341      --> ..................................................  Ethylene
CT0136728      --> ..................................................  Control
ET0085838      --> ..................................................  Ethylene
ET0127808      --> ..................................................  Ethylene
ET0138709      --> ..................................................  Ethylene
RH23Z102       --> ACTGGTGGATCCACGCCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  WaterDS
RH29AE14       --> ACTGGTGGATCCACGCCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  WaterDS
CT0115404      --> ..................................................  Control
CT0085064      --> ..................................................  Control
CT0083445      --> ACTGGTGGATCCACACCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  Control
CT0045371      --> ACTGGTGGATCCACACCCTCGTTGCCAGAAGCTGTTGAAGATCTACAGCC  Control
CT0131223      --> ......................................AGATCTACAGCC  Control
ET0145267      --> ..................................................  Ethylene
CT0054963      --> ..................................................  Control
ET0019314      --> ..................................................  Ethylene
ET0024348      --> ..................................................  Ethylene

               1901   -   1951
RU02853        --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
ET0057932      <-- TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
ET0121573      <-- ..................................................
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTG................
RH29AE14       --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTG................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
CT0045371      --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
CT0131223      --> TTGAATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
ET0145267      --> ...AATTGTGAGTAGGAGATGTAAATCTTAGCTGTACATTTGGCC--TTT
CT0054963      --> ....................................CATTTGGCCGTTTT
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               1951   -   2001
RU02853        --> CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
ET0057932      <-- CCGATGTTGTGCATAAGTTCAAGAC.........................
ET0121573      <-- ...............................................GAG
CT0062331      <-- ..................................................
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> CCGATGTTGTGCATAAGTTCAAGACGATGGAA..................
CT0045371      --> CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
CT0131223      --> CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
ET0145267      --> CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
CT0054963      --> CCGATGTTGTGCATAAGTTCAAGACGATGGAACTGTAAAAATTGAATGAG
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               2001   -   2051
RU02853        --> CTGATAACGATGCACGGAGAGAACAGAGAGGGAA-CCCCGCCGAGCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- CTGATAACGATGCACGGGGAGAA...........................
ET0057932      <-- ..................................................
ET0121573      <-- CTGATAACGATGCACGGGGAGAACAGAGAGGGAAACCCCGCCGAGCATAG
CT0062331      <-- ...........................................AGCATAG
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> CTGATAACGATGCACGGGGAGAACAGAGAGGGAA................
CT0131223      --> CTGATAACGATGCACGGGGAGAACAGAGA.....................
ET0145267      --> CTGATAACGATGCATGGAGAGGACAGAGAGGGAA-CCCCGCCGAGCATAG
CT0054963      --> CTGATAACGATGCATGGAGAGGACAGAGAGGGAA-CCCCGCCGAGCATAG
ET0019314      --> ..................................................
ET0024348      --> ..................................................

               2051   -   2101
RU02853        --> GTTCCACTATACGTAGAAAGTTGTGCATTT-TGTTTGCAGCCAGCTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- GTTCCACTATACGTAGAAAGTAGTGAAGTTCTGTTTGCAGCCAGCTGAAA
CT0062331      <-- GTTCCACTATACGTAGAAAGTTGTGCATTT-TGTTTGCAGCCAGCTGAAA
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> GTTCCACTATACGTAGAAAGTTGTGCATTT-TGTTTGCAGCCAGCTGAAA
CT0054963      --> GTTCCACTATACGTAGAAAGTTGTGCATTT-TGTTTGCAGCCAGCTGAAA
ET0019314      --> ........................GCATTT-TGTTTGCAGCCAGCTGAAA
ET0024348      --> ........................GCATTT-TGTTTGCAGCCAGCTGAAA

               2101   -   2151
RU02853        --> GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- GATTACCTTAATTCTATTTTGACGTAGAGACTAGGCTGGTGTACAAGGGA
CT0062331      <-- GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA
CT0054963      --> GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA
ET0019314      --> GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA
ET0024348      --> GATCACCTTAATTCTATTTTGACATAGAGACTAGGCTGGTGTACAAGGGA

               2151   -   2201
RU02853        --> GTCAGTTTCTTCTCTCTTTCTGTAGACAAATTGTGTAATTATGTGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- GTCAGTTTCTTCTCTCTTTCTGTAGACAAATTGTGTAATTATGTGATTGT
CT0062331      <-- GTCAGTTTCTTCTCTCTTTCTGTAGACAAATTGTGTAATTATGTGATTGT
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> GTCAGTTTCTTCTCTCTTTCT.............................
CT0054963      --> -TCAGTTTCTTCTCTCTTTCTGTAGACtaa....................
ET0019314      --> GTCAGTTTCTTCTCTCTTTCTGTAGACAAATTGTGTAATTATGTGATTGT
ET0024348      --> GTCAGTTTCTTCTCTCTTTCTGTAGACAAATTGTGTAATTATGTGATTGT

               2201   -   2251
RU02853        --> GGATTTTGCACTGGTTTGTAATTAAACTTATTGATCTACTTAAATATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................................
ET0076403      <-- ..................................................
ET0001116      <-- ..................................................
CT0080362      <-- ..................................................
CT0036111      <-- ..................................................
ET0070332      <-- ..................................................
ET0071108      <-- ..................................................
ET0069473      <-- ..................................................
ET0129381      <-- ..................................................
CT0001873      <-- ..................................................
CT0002997      <-- ..................................................
CT0134896      <-- ..................................................
ET0075965      <-- ..................................................
ET0091644      <-- ..................................................
CT0084707      <-- ..................................................
CT0092124      <-- ..................................................
CT0124089      <-- ..................................................
ET0064113      <-- ..................................................
CT0006405      <-- ..................................................
CT0066753      <-- ..................................................
CT0069990      <-- ..................................................
CT0076616      <-- ..................................................
ET0000288      <-- ..................................................
ET0006003      <-- ..................................................
ET0057932      <-- ..................................................
ET0121573      <-- GGATTTTGCACTGGTTTGTAATTAAATTTATTGATCTACTTAAATATC..
CT0062331      <-- GGATTTTGCACTGGTTTGTAATTAAACTTATTGATCTACTTAAATATCAT
CT0131951      --> ..................................................
ET0099267      --> ..................................................
ET0131471      --> ..................................................
ET0134765      --> ..................................................
CT0041199      --> ..................................................
CT0076407      --> ..................................................
CT0101352      --> ..................................................
ET0039341      --> ..................................................
CT0136728      --> ..................................................
ET0085838      --> ..................................................
ET0127808      --> ..................................................
ET0138709      --> ..................................................
RH23Z102       --> ..................................................
RH29AE14       --> ..................................................
CT0115404      --> ..................................................
CT0085064      --> ..................................................
CT0083445      --> ..................................................
CT0045371      --> ..................................................
CT0131223      --> ..................................................
ET0145267      --> ..................................................
CT0054963      --> ..................................................
ET0019314      --> GGATTTTGCACTGGTTTGTAATTAAACTTATTGATCTACTTAAATATCAT
ET0024348      --> GGATTTTGCACTGGTTTGTAATTAAACTTATTGATCTACTTAAATATCAT

               2251   -   2301
RU02853        --> ATAATAGGAGAAGCATTTTTATAAGGAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH25AC88       <-- ..................................
ET0076403      <-- ..................................
ET0001116      <-- ..................................
CT0080362      <-- ..................................
CT0036111      <-- ..................................
ET0070332      <-- ..................................
ET0071108      <-- ..................................
ET0069473      <-- ..................................
ET0129381      <-- ..................................
CT0001873      <-- ..................................
CT0002997      <-- ..................................
CT0134896      <-- ..................................
ET0075965      <-- ..................................
ET0091644      <-- ..................................
CT0084707      <-- ..................................
CT0092124      <-- ..................................
CT0124089      <-- ..................................
ET0064113      <-- ..................................
CT0006405      <-- ..................................
CT0066753      <-- ..................................
CT0069990      <-- ..................................
CT0076616      <-- ..................................
ET0000288      <-- ..................................
ET0006003      <-- ..................................
ET0057932      <-- ..................................
ET0121573      <-- ..................................
CT0062331      <-- ATAATAGGAGAAGCATTTTTATAAGGAAAAAAAA
CT0131951      --> ..................................
ET0099267      --> ..................................
ET0131471      --> ..................................
ET0134765      --> ..................................
CT0041199      --> ..................................
CT0076407      --> ..................................
CT0101352      --> ..................................
ET0039341      --> ..................................
CT0136728      --> ..................................
ET0085838      --> ..................................
ET0127808      --> ..................................
ET0138709      --> ..................................
RH23Z102       --> ..................................
RH29AE14       --> ..................................
CT0115404      --> ..................................
CT0085064      --> ..................................
CT0083445      --> ..................................
CT0045371      --> ..................................
CT0131223      --> ..................................
ET0145267      --> ..................................
CT0054963      --> ..................................
ET0019314      --> ATAATAGGAGAAGCATTTTTATAAGGAAAAA...
ET0024348      --> ATAATAGGAGAAGCATTTTTATAAGGAAAAA...