SNPs of unigene RU02861
               1      -     51
RU02861        --> GCTATTTAG-AACCAAAAAAGAAAACAAGAGCCTTAATGTCAGGGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- .CTATTTAG-AACCAAAAAAGAAAACAAGAGCCTTAATGTCAGGGATGGA
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> GCTATTTAG-AACCAAAAAAGAAAACAAGAGCCTTAATGTCAGGGATGGA
CT0065354      --> GCTATTTAGGAACCAAAAA-G-AAACAAGAGCCTTAATGTCAGGGATGGA
RH11H65        --> ...............................CCTTAATGTCAGGGATGGA
RH27AC223      --> ...............................CCTTACTGTCAGGGATGGA
CT0134644      --> ................................tTTAATGTCAGGGATGGA
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               51     -    101
RU02861        --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
CT0065354      --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
RH11H65        --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
RH27AC223      --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
CT0134644      --> GAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCAC
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               101    -    151
RU02861        --> CGCCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- CGCCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA  Control
CT0040258      <-- ................................................CA  Control
CT0107099      <-- ..................................................  Control
ET0010797      <-- ..................................................  Ethylene
CT0058359      <-- ..................................................  Control
CT0078346      <-- ..................................................  Control
CT0082981      <-- ..................................................  Control
ET0037453      <-- ..................................................  Ethylene
CT0057854      --> CGCCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA  Control
CT0065354      --> CGCCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA  Control
RH11H65        --> CACCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA  WaterDS
RH27AC223      --> CACCGGATTCGCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCA  WaterDS
CT0134644      --> CGCCGGATTCGCCCACTCTGGATTCCTCCGAGCAGGTCTACATCTCCTCA  Control
RH47BN84       --> ..................................................  WaterDS
ET0089042      --> ..................................................  Ethylene
CT0132637      --> ..................................................  Control
CT0105978      --> ..................................................  Control
CT0046494      --> ..................................................  Control
CT0002026      --> ..................................................  Control
ET0106116      --> ..................................................  Ethylene
ET0108673      --> ..................................................  Ethylene
ET0094045      --> ..................................................  Ethylene
CT0080937      --> ..................................................  Control
ET0014532      --> ..................................................  Ethylene
ET0042677      --> ..................................................  Ethylene
CT0059303      --> ..................................................  Control

               151    -    201
RU02861        --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
CT0065354      --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
RH11H65        --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
RH27AC223      --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
CT0134644      --> CTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGA
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               201    -    251
RU02861        --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAG
CT0107099      <-- ..............................................CGAG
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGA.................
CT0065354      --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGG..................
RH11H65        --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGT............
RH27AC223      --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGT............
CT0134644      --> GGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAG
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               251    -    301
RU02861        --> TTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- TTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAA
CT0107099      <-- TTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAA
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> TTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAA
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               301    -    351
RU02861        --> GCAGTCGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- GCAGTCGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGAC
CT0107099      <-- GCAGTTGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGAC
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> GCAGTCGATCATGTGTTCCAG.............................
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               351    -    401
RU02861        --> TGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- TGGAAGACCGGAGATGG.................................
CT0107099      <-- TGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTTG
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> .............................ACCATTCGCATCCTGGATTTG
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               401    -    451
RU02861        --> GCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTTGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- GCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTTGAAGCT
ET0010797      <-- .................................................T
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> GCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTTGAAGCT
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               451    -    501
RU02861        --> TTGAATCAACGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- TTGAATCAACGTGCT...................................
ET0010797      <-- TTGAATCAACGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAA
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> TTGAATCAACGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAA
ET0089042      --> TTGAATCAACGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAA
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               501    -    551
RU02861        --> GGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- GGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGA
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> GGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGA
ET0089042      --> GGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGA
CT0132637      --> ................GATGCCTTCCGCCTTATCAACCCACAGACTATGA
CT0105978      --> .....................................CCACAGACTATGA
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               551    -    601
RU02861        --> TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
ET0089042      --> TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
CT0132637      --> TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
CT0105978      --> TGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAAT
CT0046494      --> ......................GACCACATCCAATCTTGGCCATCTTAAT
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               601    -    651
RU02861        --> AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
ET0089042      --> AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
CT0132637      --> AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
CT0105978      --> AAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
CT0046494      --> AAACCATCTATCCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTC
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               651    -    701
RU02861        --> TATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- TATAGCAATCAATTACAGGAAGAATGAACTCGAGG...............
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> TATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
ET0089042      --> TATAGCAATCAATTACAGGAAGAATGAA......................
CT0132637      --> TATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
CT0105978      --> TATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
CT0046494      --> TATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
CT0002026      --> .....CAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTA
ET0106116      --> ............................................TGCTTA
ET0108673      --> ............................................TGCTTA
ET0094045      --> ......................................aataagacttaA
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               701    -    751
RU02861        --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
ET0089042      --> ..................................................
CT0132637      --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
CT0105978      --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
CT0046494      --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
CT0002026      --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
ET0106116      --> ACCTT-CATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
ET0108673      --> ACCTT-CATAAAGAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
ET0094045      --> ACCTTACATAA-GAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTG
CT0080937      --> ..........................ATGGGCTGACCCTCAAGCGTTTTG
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               751    -    801
RU02861        --> ATACTCATTCAAAAAACAAATGAGCAAACTGTTCAGGAGATGTTGAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> ATACTCATTCAAAAA-CAAATGAGTAAACTGTTCAGGAGATGTTGAGCCT
ET0089042      --> ..................................................
CT0132637      --> ATACTCATTCAAAAA-CAAATGAGCAAACTGTTCAGGAGATGTTGAGCCT
CT0105978      --> ATACTCATTCAAAAAcaa................................
CT0046494      --> ATACa.............................................
CT0002026      --> ATACTCATTCAAAAACAAAATGAGCAAACTGTTCAGGAGATGTTGAGCCT
ET0106116      --> ATACACATTCAAAAAACAAATGAGCAAACTGTTCAAGAGATGTTGAGCCT
ET0108673      --> ATACACATTCAAAAAACAAATGAGCAAACTGTTCAAGAGATGTTGAGCCT
ET0094045      --> ATACACATTCAAAAA-CAAATGAGCAAACTGTTCAAGAGATGTTGAGCCT
CT0080937      --> ATACTCATTCAAAAA-CAAATGAGCAAACTGTTCAGGAGATGTTGAGCCT
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               801    -    851
RU02861        --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ..................................................
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
ET0089042      --> ..................................................
CT0132637      --> AGCTGTCAAATACAACAAG...............................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATG............
ET0106116      --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
ET0108673      --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
ET0094045      --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
CT0080937      --> AGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
ET0014532      --> ...............CAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
ET0042677      --> ...............CAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAG
CT0059303      --> ..................................................

               851    -    901
RU02861        --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- ................................................cg
CT0078346      <-- ..................................................
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
ET0108673      --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
ET0094045      --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
CT0080937      --> AGAAGCTTGCAATTGCAAATGT............................
ET0014532      --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
ET0042677      --> AGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTT
CT0059303      --> ..................................................

               901    -    951
RU02861        --> GAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- tAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGG
CT0078346      <-- .................................ATAGTGCAGACCTTGGG
CT0082981      <-- ..................................................
ET0037453      <-- ..................................................
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> GAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGG
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> GAAGAACATGTCTCCAA.................................
ET0108673      --> GAAGAACATGTCTCCAACTTAAT...........................
ET0094045      --> GAAGAACATGTCTCCAACTTAATGT.........................
CT0080937      --> ..................................................
ET0014532      --> GAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGG
ET0042677      --> GAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGG
CT0059303      --> .............................AAACATAGTGCAGACCTTGGG

               951    -   1001
RU02861        --> AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
CT0078346      <-- AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
CT0082981      <-- ............TACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
ET0037453      <-- ............TACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
ET0042677      --> AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA
CT0059303      --> AACAATGCTCGATACTGTTGTGTTCTAGACTTCAGCATGCAAGTGTGCAA

               1001   -   1051
RU02861        --> AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA
CT0078346      <-- AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA
CT0082981      <-- AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA
ET0037453      <-- AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> AACTGAGTCTTCAGT...................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTT.............
ET0042677      --> AACTGAGTCTTCAGTACTGAACGTGTAAGACTT.................
CT0059303      --> AACTGAGTCTTCAGTACTGAACGTGTAAGACTTGTTTTAGACGAACTTAA

               1051   -   1101
RU02861        --> GGTGTATGCACGAAAGTTT-GTGTTTCCTGATTTTCATTCCCAGCTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- GGTGTATGCACGAAAGTTT-GTGTTTCCTGATTTTCATTCCCAGCTACCA
CT0078346      <-- GGTGTATGCACGAAAGTTT-GTGTTTCCTGATTTTCATTCCCAGCTACCA
CT0082981      <-- GGTGTATGCACGAAAGTTT-GTGTTTCCTGATTTTCATTCCCAGTTACCA
ET0037453      <-- GGTGTATGCACGAAAGTTT-GTGTTTCCTGATTTTCATTCCCAGCTACCA
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> GGTGTATGCACGAAAGTTTTGTGTTTtaccc...................

               1101   -   1151
RU02861        --> GTTTTATCATGTTTCTTTAAATTTACGGTGTGAAATTGATTGAATTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ..................................................
CT0040258      <-- ..................................................
CT0107099      <-- ..................................................
ET0010797      <-- ..................................................
CT0058359      <-- GTTTTATCATGTTTCTTTAAATTTACGGTGTGAAATTGATTGAATTG...
CT0078346      <-- GTTTTATCATGTTTCTTTAAAaaaaaa.......................
CT0082981      <-- GTTTTACCATGTTTCTTTAAATTTACGGTGTGAAATTGATTGAATTGCTT
ET0037453      <-- GTTTTATCATGTTTCTTTAAATTTACGGTGTGAAATTGATTGAATTGCTT
CT0057854      --> ..................................................
CT0065354      --> ..................................................
RH11H65        --> ..................................................
RH27AC223      --> ..................................................
CT0134644      --> ..................................................
RH47BN84       --> ..................................................
ET0089042      --> ..................................................
CT0132637      --> ..................................................
CT0105978      --> ..................................................
CT0046494      --> ..................................................
CT0002026      --> ..................................................
ET0106116      --> ..................................................
ET0108673      --> ..................................................
ET0094045      --> ..................................................
CT0080937      --> ..................................................
ET0014532      --> ..................................................
ET0042677      --> ..................................................
CT0059303      --> ..................................................

               1151   -   1201
RU02861        --> CACTCATCATTCAGTATCAACTAGAATAACTCATTTTCATGGCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074944      <-- ................................................
CT0040258      <-- ................................................
CT0107099      <-- ................................................
ET0010797      <-- ................................................
CT0058359      <-- ................................................
CT0078346      <-- ................................................
CT0082981      <-- CACTCACCATTCAGTATCAACTAGAAT.....................
ET0037453      <-- CACTCATCATTCAGTATCAACTAGAATAACTCATTTTCATGGCAAAAA
CT0057854      --> ................................................
CT0065354      --> ................................................
RH11H65        --> ................................................
RH27AC223      --> ................................................
CT0134644      --> ................................................
RH47BN84       --> ................................................
ET0089042      --> ................................................
CT0132637      --> ................................................
CT0105978      --> ................................................
CT0046494      --> ................................................
CT0002026      --> ................................................
ET0106116      --> ................................................
ET0108673      --> ................................................
ET0094045      --> ................................................
CT0080937      --> ................................................
ET0014532      --> ................................................
ET0042677      --> ................................................
CT0059303      --> ................................................