SNPs of unigene RU03079
               1      -     51
RU03079        --> GTTCGTAATGTTACAAATAGAAAGTGCAGATATATTCCTTCCCTACGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- GTTCGTAATGTTACAAATAGAAAGTGCAGATATATTCCTTCCCTACGAGA
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               51     -    101
RU03079        --> TATCACATCGACTGTGAGTTGAGACCATTAATTTGTAGAAAAGGAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- TATCACATCGACTGTGAGTTGAGACCATTAATTTGTAGAAAAGGAAGAAA
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               101    -    151
RU03079        --> AAAAAAAAAAAATGGTAACAAACAATGGAGTACTCCCTTCATCGTTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- AAAAAAAAAAAATGGTAACAAACAATGGAGTACTCCCTTCATCGTTCGTT
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               151    -    201
RU03079        --> CCCATGTTTAGCCAACGTGGCACCAACAATTATTTGAAACCTATATTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- CCCATGTTTAGCCAACGTGGCACCAACAATTATTTGAAACCTATATTTCC
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               201    -    251
RU03079        --> TGTGTTTTGTTCCCTATAAGGGATTAAAATCCCACATGCTGTGTGTACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- TGTGTTTTGTTCCCTATAAGGGATTAAAATCCCACATGCTGTGTGTACTG
CT0038328      <-- ....TTTTGTTCCCTATAAGGGATTAAAATCCCACATGCTGTGTGTACTG
RH24AB139      <-- ..........................................agGTACTG
RH15M16        <-- ..............................................ACTG
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               251    -    301
RU03079        --> AGAGTAGGCATCTGACTGCATTGCAATTGGGGCACGCGTAACATAATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- AGAGTAGGCATC......................................  Control
CT0038328      <-- AGAGTAGGCATCTGACTGCATTGCAATTGGGGCACGCGTAACATAATCTG  Control
RH24AB139      <-- AGAATAGGCATCTGACTGCATTGCAATTGGGGCACGCGTAACATAATCTG  WaterDS
RH15M16        <-- AGAATAGGCATCTGACTGCATTGCAATTGGGGCACGCGTAACATAATCTG  WaterDS
ET0037756      <-- ..................................................  Ethylene
CT0027469      <-- ..................................................  Control
CT0023910      <-- ..................................................  Control
CT0046840      <-- ..................................................  Control
CT0041656      <-- ..................................................  Control
CT0062058      <-- ..................................................  Control
RH39BD88       <-- ..................................................  WaterDS
RH08E94        --> ..................................................  WaterDS
RH11D86        --> ..................................................  WaterDS
RH57CB19       --> ..................................................  WaterDS
RH59CB19       --> ..................................................  WaterDS
RH59CF55       --> ..................................................  WaterDS
ET0045137      --> ..................................................  Ethylene
ET0051029      --> ..................................................  Ethylene
ET0003759      --> ..................................................  Ethylene

               301    -    351
RU03079        --> GAATATCAAATGCGTCTATGAGTTCCCCTGCTATATTTCTCACTCGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- GAATATCAAATGCGTCTATGAGTTCCCCTGCTATATTTCTCACTCGGAAA
RH24AB139      <-- GAATATCAAATGCGTCTATGAGTTCCCCTGCTATATTTCTCACTCGGAAA
RH15M16        <-- GAATATCAAATGCGTCTATGAGTTCCCCTGCTATATTTCTCACTCGGAAA
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               351    -    401
RU03079        --> CTCAGGTATGCAGTGAGCTTGTGGATTGCCTTAGCTTTGTTTGGTGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- CTCAGGTATGCAGTGAGCTTGTGGATTGCCTTAGCTTTGTTTGGTGCAAC
RH24AB139      <-- CTCAGGTATGCAGTGAGCTTGTGGATTGCCTTAGCTTTGTTTGGTGCAAC
RH15M16        <-- CTCAGGTATGCAGTGAGCTTGTGGATTGCCTTAGCTTTGTTTGGTGCAAC
ET0037756      <-- ........................................TTGGTGCAAC
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               401    -    451
RU03079        --> ATAATCAACATTACGATAGGTTCCTATGTCTTTCCATATTTGATCCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ATAATCAACATTACGATAGGTTCCTATGTCTTTC................
RH24AB139      <-- ATAATCAACATTACGATAGGTTCCTATGTCTTTCCATATTTGATCCAAGG
RH15M16        <-- ATAATCAACATTACGATAGGTTCCTATGTCTTTCCATATTTGATCCAAGG
ET0037756      <-- ATAATCAACATTACGATAGGTTCCTATGTCTTTCCATATTTGATCCAAGG
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               451    -    501
RU03079        --> CATAAAGATCACAGACGAGTTTCAGAGCTGCTCGAGAACTTGCATCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- CATAAAGATCACAGACGAGTTTCAAAGCTGCTCGAGAACTTGCATCTGGA
RH15M16        <-- CATAAAGATCACAGACGAGTTTCAAAGCTGCTCGAGAACTTGCATCTGGA
ET0037756      <-- CATAAAGATCACAGACGAGTTTCAGAGCTGCTCGAGAACTTGCATCTGGA
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               501    -    551
RU03079        --> CAGTTCTGCACAGCTTCTATAAACTTGGCAAGGATGACAGATTCAATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- CAGTTCTGCACAGCTTCTATAAACTTGGCAAGGATGACAGATTCAATATG
RH15M16        <-- CAGTTCTGCACAGCTTCTATAAACTTGGCAAGGATGACAGATTCAATATG
ET0037756      <-- CAGTTCTGCACAGCTTCTATAAACTTGGCAAGGATGACAGATTCAATATG
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               551    -    601
RU03079        --> GGACTCTGCAAGTGTCAAAAGGTGGTTTAAGCATCTATTCCAAGCGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- GGACTCTGCAAGTGTCAAAAGGTGGTTTAAGCATCTATTCCAAGCGCCAA
RH15M16        <-- GGACTCTGCAAGTGTCAAAAGGTGGTTTAAGCATCTATTCCAAGCGCCAA
ET0037756      <-- GGACTCTGCAAGTGTCAAAAGGTGGTTTAAGCATCTATTCCAAGCGCCAA
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               601    -    651
RU03079        --> AACTTCCAAGAGTTTTAGAGTGCTTGCGAAGTCTAACAGCAACACTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- AACTTCCAAGAGTTTTAGAGTGCTTGCGAAGTCTAACAGCAACACTTTGA
RH15M16        <-- AACTTCCAAGAGTTTTAGAGTGCTTGCGAAGTCTAACAGCAACACTTTGA
ET0037756      <-- AACTTCCAAGAGTTTTAGAG..............................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               651    -    701
RU03079        --> AGTAGTCGAGAAGTTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- AGTAGTCGAGAAGTTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
RH15M16        <-- AGTAGTCGAGAAGTTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
ET0037756      <-- ..................................................
CT0027469      <-- ............GTTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
CT0023910      <-- .............TTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
CT0046840      <-- .............TTCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
CT0041656      <-- ..............TCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
CT0062058      <-- ..............TCGGTATCTGAAAGCATCCAACTGGAACTTTGGATC
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               701    -    751
RU03079        --> TCGCAAATGGTCTTCACTTTCCCATCGAGCGGTCACTGGATTTGGCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................  Control
CT0038328      <-- ..................................................  Control
RH24AB139      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCGGTCACTGGATTTGGCTGAG  WaterDS
RH15M16        <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCGGTCACTGGATTTGGCTGAG  WaterDS
ET0037756      <-- ..................................................  Ethylene
CT0027469      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCAGTCACTGGATTTGGCTGAG  Control
CT0023910      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCAGTCACTGGATTTGGCTGAG  Control
CT0046840      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCAGTCACTGGATTTGGCTGAG  Control
CT0041656      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCAGTCACTGGATTTGGCTGAG  Control
CT0062058      <-- TCGCAAATGGTCTTCACTTTCCCATCGAGCAGTCACTGGATTTGGCTGAG  Control
RH39BD88       <-- ..................................................  WaterDS
RH08E94        --> ..................................................  WaterDS
RH11D86        --> ..................................................  WaterDS
RH57CB19       --> ..................................................  WaterDS
RH59CB19       --> ..................................................  WaterDS
RH59CF55       --> ..................................................  WaterDS
ET0045137      --> ..................................................  Ethylene
ET0051029      --> ..................................................  Ethylene
ET0003759      --> ..................................................  Ethylene

               751    -    801
RU03079        --> ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
RH15M16        <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
ET0037756      <-- ..................................................
CT0027469      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
CT0023910      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
CT0046840      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
CT0041656      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
CT0062058      <-- ATAGGTATGAGTTCATGGATTCTCTAAGGTAATTCCAGGTAACTGTGAGT
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               801    -    851
RU03079        --> GTCCCGCCTT-GAAACTTCTCCTTGTATTGCTTCAACAGATCACCTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- GTCCCGCCTT-GAAACTTCTCCTTGTATTGCTTCAACAGATCACCTGCTA
RH15M16        <-- GTCCCGCCTT-GAAACTTCTCCTTGTATTGCTTCAACAGATCACCTGCTA
ET0037756      <-- ..................................................
CT0027469      <-- GTCCCGCCTTCGAAACTTCTC.............................
CT0023910      <-- GTCCCGCCTT-GAAACTTCTCC............................
CT0046840      <-- GTCCCGCCTTCGAAACTTCTCC............................
CT0041656      <-- GTCCCGCCTTCGAAACTTCTCC............................
CT0062058      <-- GTCCCGCCTTCGAAACTTCTCC............................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               851    -    901
RU03079        --> CCTGCTGTAGAAGCACCGTGTTGTCCCCTTCGAATGTCTGAAAAATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- CCTGCTGTAGAAGCACCGTGTTGTCCCCTTCGAATGTCTGAAAAATGTCA
RH15M16        <-- CCTGCTGTAGAAGCACCGTGTTGTCCCCTTCGAATGTCTGAAAAATGTCA
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ..................................................
RH08E94        --> ..................................................
RH11D86        --> ..................................................
RH57CB19       --> ..................................................
RH59CB19       --> ..................................................
RH59CF55       --> ..................................................
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               901    -    951
RU03079        --> TGGTCATTCCTCAAACTGCCAAAGCGGTTGACAGCAGCGtACCCATGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- TGGTCATTCCTCAAACTGCCAAAGCGGTTGACAGCAGCGc..........
RH15M16        <-- TGGTCATTCCTCAAACTGCCAAAGCGGTTGACAGCAGCGc..........
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- ........................................ACCCATGGCC
RH08E94        --> ........................................ACCCATGGCC
RH11D86        --> ........................................ACCCATGGCC
RH57CB19       --> ........................................ACCCATGGCC
RH59CB19       --> ........................................ACCCATGGCC
RH59CF55       --> ........................................ACCCATGGCC
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               951    -   1001
RU03079        --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
RH08E94        --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
RH11D86        --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
RH57CB19       --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
RH59CB19       --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
RH59CF55       --> TCCACAAGCTTCCCTACAGATACTCAATGACTTTGCTGTATATGACGTCA
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               1001   -   1051
RU03079        --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
RH08E94        --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
RH11D86        --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
RH57CB19       --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
RH59CB19       --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
RH59CF55       --> CATAAGCCTTGAGCCCTGCTGAAAGAGAATGGACATCTGCAACCAATTGT
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               1051   -   1101
RU03079        --> TCATCATGAGTCTTCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- TCATCATGAGTCTTCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
RH08E94        --> TCATCATGAGCCTGCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
RH11D86        --> TCATCATGAGCCTGCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
RH57CB19       --> TCATCATGAGTCTTCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
RH59CB19       --> TCATCATGAGTCTTCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
RH59CF55       --> TCATCATGAGTCTTCTTCATCTCTGAATATTTCTCCACCAAATGTAGTGT
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               1101   -   1151
RU03079        --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
RH08E94        --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
RH11D86        --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
RH57CB19       --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
RH59CB19       --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
RH59CF55       --> GGCAAAATGGAATGCGTAAGTTGAAGCCAGCATTGGCATCAACTTGTGCT
ET0045137      --> ...............................................tCT
ET0051029      --> ..................................................
ET0003759      --> ..................................................

               1151   -   1201
RU03079        --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
RH08E94        --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
RH11D86        --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
RH57CB19       --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
RH59CB19       --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
RH59CF55       --> GCTGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
ET0045137      --> GTTGGAATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
ET0051029      --> .tgGGGATTGGTAATCAAGAATACTGACTTCAGGTTGCTTTGGAGGACCA
ET0003759      --> ..................................................

               1201   -   1251
RU03079        --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
RH08E94        --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
RH11D86        --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
RH57CB19       --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
RH59CB19       --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
RH59CF55       --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
ET0045137      --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
ET0051029      --> AACTGCTGACGCAGTAGAGAATATCGGATTGCAATTGTGCCAGCAACCTT
ET0003759      --> ..................................................

               1251   -   1301
RU03079        --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
RH08E94        --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
RH11D86        --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
RH57CB19       --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
RH59CB19       --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
RH59CF55       --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
ET0045137      --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
ET0051029      --> CAAGACACTGCCTGAAGAATATGCAAGGCCGACCCTCCCACCTACAAGTT
ET0003759      --> ..................................................

               1301   -   1351
RU03079        --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
RH08E94        --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
RH11D86        --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
RH57CB19       --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
RH59CB19       --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
RH59CF55       --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
ET0045137      --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
ET0051029      --> CTCCTAGTGTGGCAGCAAATCTTTTATTTATAGATGGTAAGCTACTTGTG
ET0003759      --> ..................................................

               1351   -   1401
RU03079        --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
RH08E94        --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
RH11D86        --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
RH57CB19       --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
RH59CB19       --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
RH59CF55       --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAAGATTATCACG
ET0045137      --> TATTTACCATCCCGAGAGACATCTCCAAAGCG..................
ET0051029      --> TATTTACCATCCCGAGAGACATCTCCAAAGCGATTAAGAA..........
ET0003759      --> ..................................................

               1401   -   1451
RU03079        --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
RH08E94        --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
RH11D86        --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
RH57CB19       --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
RH59CB19       --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
RH59CF55       --> AGGGATTCTCACTGCGCGGAATCTTAATGCTCCATTGTCCACCCCATTCA
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> ...............gctacttgtgatTGCTCCATTGTCCACCCCATTCA

               1451   -   1501
RU03079        --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ..................................................
CT0038328      <-- ..................................................
RH24AB139      <-- ..................................................
RH15M16        <-- ..................................................
ET0037756      <-- ..................................................
CT0027469      <-- ..................................................
CT0023910      <-- ..................................................
CT0046840      <-- ..................................................
CT0041656      <-- ..................................................
CT0062058      <-- ..................................................
RH39BD88       <-- GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
RH08E94        --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
RH11D86        --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
RH57CB19       --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
RH59CB19       --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
RH59CF55       --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA
ET0045137      --> ..................................................
ET0051029      --> ..................................................
ET0003759      --> GACCAACCTTATGGCCACAATCGTTTATCTCAATTCCTGGAAGAGTTTGA

               1501   -   1551
RU03079        --> TGAGTCTTCATATCCCTTATTGGTACAATGAAGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0106126      <-- ....................................
CT0038328      <-- ....................................
RH24AB139      <-- ....................................
RH15M16        <-- ....................................
ET0037756      <-- ....................................
CT0027469      <-- ....................................
CT0023910      <-- ....................................
CT0046840      <-- ....................................
CT0041656      <-- ....................................
CT0062058      <-- ....................................
RH39BD88       <-- TG..................................
RH08E94        --> TGAGTCTTCATATCCCTTATTGGT............
RH11D86        --> TGAGTCTTCATATCCCTTATTGGT............
RH57CB19       --> TGAGTCTTCATATCCCTTATTGGT............
RH59CB19       --> TGAGTCTTCATATCCCTTATTGGT............
RH59CF55       --> TGAGTCTTCATATCCCTTATTGGT............
ET0045137      --> ....................................
ET0051029      --> ....................................
ET0003759      --> TGAGTCTTCATATCCCTTATTGGTACAATGAAGGCG