SNPs of unigene RU03158
               1      -     51
RU03158        --> TTTTTTTTGAGCACTAAATCATTCCATAGAATACATTTTCGTTTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- .......aaactACTAAATCATTCCATAGAATACATTTTCGTTTTTCTTT
CT0034815      <-- ....................tTTCCATAGAATACATTTTCGTTTTTCTTT
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> TTTTTTTTGAGCACTAAATCATTCCATAGAATACATTTTCGTTTTTCTTT
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               51     -    101
RU03158        --> TGCTTTGATTACATAGGATAAGCCCTCTCTTGCCAGAATCGTTGGCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- TGCTTTGATTACATAGGATAAGCCCTCTCTTGCCAGAATCGTTGGCATCA
CT0034815      <-- TGCTTTGATTACATAGGATAAGCCCTCTCTTGCCAGAATCGTTGGCATCA
ET0074517      <-- ........................................GTTGGCATCA
ET0094690      <-- ........................................GTTGGCATCA
ET0074980      <-- .........................................TTGGCATCA
ET0105459      <-- .........................................TTGGCATCA
CT0067981      <-- ............................................cgATCA
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> TGCTTTGATTACATAGGATAAGCCCTCTCTTGCCAGAATCGTTGGCATCA
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               101    -    151
RU03158        --> CTTGCCAAGAGGCATATAAAATAAA-CG-AA-GGGATAATCAAGGAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- CTTGCCAAGAGGCATATAAAATA...........................
CT0034815      <-- CTTGCCAAGAGGCATATAAAATAAA-CG-AA-GGGATAATCAAGGAGCTG
ET0074517      <-- CTTGCCAAGAGGCATATAAAATAAAACGAAA-GGGATAATCAAGGAGCTG
ET0094690      <-- CTTGCCAAGAGGCATATAAAATAAA-CG-AAAGGGATAATCAAGGAGCTG
ET0074980      <-- CTTGCCAAGAGGCATATAAAATAAAACGAAA-GGGATAATCAAGGAGCTG
ET0105459      <-- CTTGCCAAGAGGCATATAAAATAAAACGAAA-GGGATAATCAAGGAGCTG
CT0067981      <-- CTTGCCAAGAGGCATATAAAATAAA-CG-AA-GGGATAATCAAGGAGCTG
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> CTTGCCAAGAGGCATATAAAATAAA-CG-AA-GGGATAATCAAGGAGCTG
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               151    -    201
RU03158        --> CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................  Ethylene
CT0034815      <-- CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAGTC  Control
ET0074517      <-- CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAG-C  Ethylene
ET0094690      <-- CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAG-C  Ethylene
ET0074980      <-- CAACCCTACTATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAG-C  Ethylene
ET0105459      <-- CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAG-C  Ethylene
CT0067981      <-- CAACCCTA-TATCCGACCTACGGTAGCAGTTGATC...............  Control
CT0040376      <-- ..................................................  Control
RH54BW94       <-- ..................................................  WaterDS
ET0140363      <-- ..................................................  Ethylene
ET0031601      <-- ..................................................  Ethylene
CT0061732      --> CAACCCTA-TATCCGACCTACGGTAGCAGTTGATCGAACATCATAAAGTC  Control
ET0121630      --> ..................................................  Ethylene
ET0032361      --> ..................................................  Ethylene
ET0034396      --> ..................................................  Ethylene
ET0041707      --> ..................................................  Ethylene
ET0044054      --> ..................................................  Ethylene
CT0096026      --> ..................................................  Control
ET0033209      --> ..................................................  Ethylene
CT0026454      --> ..................................................  Control
RH18R90        --> ..................................................  WaterDS
CT0062348      --> ..................................................  Control

               201    -    251
RU03158        --> TCAAACTCTCAATTACTTGAG-AA-TTCGAATAAGATACAGACCAGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- TCAAACTCTCAATTACTTGAG-AA-TTCGAAT..................
ET0074517      <-- TCAAACTCTCAATTACTTGAG-AA-TTCGAATAAGATACAGACCAGGGAA
ET0094690      <-- TCAAACTCTCAATTACTTGAG-AA-TTCGAATAAGATACAGACCAGGGAA
ET0074980      <-- TCAAACTCTCAATTACTTGAG-AA-TTCGAATAAGATACAGACCAGGGAA
ET0105459      <-- TCAAACTCTCAATTACTTGAGTAATTTCGAATAAGATACAGACCAGGGAA
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> TCAAACTCTCAATTACTTGAG-AA-TTCGAATAAGATACAGACCAGGGAA
ET0121630      --> ...........................ttttTAAGATACAGACCAGGGAA
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               251    -    301
RU03158        --> CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
ET0094690      <-- CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
ET0074980      <-- CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
ET0105459      <-- CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> CCGTAAT...........................................
ET0121630      --> CCGTAATCCCTATAACCATGCAAATTAAGATAAACAGACCAATAATATAA
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               301    -    351
RU03158        --> TAATCTTTCATGACATATAACACAGCAGCGATCAATTTAGTATAATTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- TAATCTTTCATGACATATAACACAGCAGCGATCA................
ET0094690      <-- TAATCTTTCATGACATATAACACAGCAGCGATCA................
ET0074980      <-- TAATCTTTCATGACATATAACACAGCAGCGtattctat............
ET0105459      <-- TAATCTTTCATGACATATAACACAGCAGCGATCA................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> TAATCTTTCATGACATATAACACAGCAGCGATCAATTTAGTAT.......
ET0032361      --> ...TCTTTCATGACATATAACACAGCAGCGATCAATTTAGTATAATTAGC
ET0034396      --> ...TCTTTCATGACATATAACACAGCAGCGATCAATTTAGTATAATTAGC
ET0041707      --> ...TCTTTCATGACATATAACACAGCAGCGATCAATTTAGTATAATTAGC
ET0044054      --> ...TCTTTCATGACATATAACACAGCAGCGATCAATTTAGTATAATTAGC
CT0096026      --> ........................................TATAATTAGC
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               351    -    401
RU03158        --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
ET0034396      --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
ET0041707      --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
ET0044054      --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
CT0096026      --> ATCATTGATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
ET0033209      --> ......GATTAGCAGTCAAACGAATGGATGAATCACGTATTGACTGCACC
CT0026454      --> .............................GAATCACGTATTGACTGCACC
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               401    -    451
RU03158        --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
ET0034396      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
ET0041707      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
ET0044054      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
CT0096026      --> AGTAGCAGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
ET0033209      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
CT0026454      --> AGTAGCGGCTGCGACACACTTGGGGTGCACCTCATATCCACATTCAAGAC
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               451    -    501
RU03158        --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
ET0034396      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
ET0041707      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
ET0044054      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
CT0096026      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
ET0033209      --> ACTGATAAGCCCAACCGCATCCTTGTT-CATCACAGTCACAACATATAAA
CT0026454      --> ACTGATAAGCCCAACCGCATCCTTGTTACATCACAGTCACAACATATAAA
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               501    -    551
RU03158        --> GGGTCCTCCCCCATTGCCTTCGGACACCAAATTCAGCTCATGCCTATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- .....CTCCTCCATTGCCTTCGGACACCAAATTCAGCTCATGCCTATGCC
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> GGGTCCTCCCCCATTGCCTT..............................
ET0034396      --> GGGTCCTCCCCCATTGCCTTCGG...........................
ET0041707      --> GGGTCCTCCCCCATTGCCTTCGG...........................
ET0044054      --> GGGTCCTCCCCCATTGCCTTCGG...........................
CT0096026      --> GGGTCCTCCTCCATTGCCTTCGGACACCAAATTCAGCTCATGCCTATGCC
ET0033209      --> GGGTCCTCCCCCATTGCCTTCGGACACCAAATTCAGCTCATagacgctcg
CT0026454      --> GGGTCCTCCCCCATTGCCTTCGGACACCAAATTCAGCTCATGCCTAT...
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               551    -    601
RU03158        --> CTCCATGGTACACCGACCTCGGCAGGCTCTTCGCCTCTTCATCCATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- CTCCATGGTACACCGACCTCGGCAGGCTCTTCGCCTCTTCATCCATTTTC
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> CTCCA.............................................
ET0033209      --> aca...............................................
CT0026454      --> ..................................................
RH18R90        --> .........ACACCGACCTCGGCAGGCTCTTCGCCTCTTCATCCATTTTC
CT0062348      --> ............................................ATTTTC

               601    -    651
RU03158        --> TTCTCCAGCAATTCCAACTTCGCATCGGTGAAGGGATACGCATTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- TTCTCCAGCAATTCCAACTT..............................
RH54BW94       <-- ..................................................
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> TTCTCCAGCAATTCCAACTTCGCATCGGTGAAGGGATACGCATTTTCTTT
CT0062348      --> TTCTCCAGCAATTCCAACTTCGCATCGGTGAAGGGATACGCATTTTCTTT

               651    -    701
RU03158        --> GTACAAGTTTATCAGATTTTCTACCCTGCCTGGTGACAGTTTTACCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..ACAAGTTTATCAGATTT-CTACCCTGCCTGGTGACAGTTTTACCATCC
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> GT................................................
CT0062348      --> GTACAAGTTTATCAGATTTTCTACCCTGCCTGGTGACAGTTTTACCATCC

               701    -    751
RU03158        --> GGCCTCAAAATTACCAAACAAGGAATACCTTTGACATCGAAATGCTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- GGCCTCAAAATTACCAAACAAGGAATACCTTTGACATCGAAATGCTTCAC
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> GGCCCCAAAATTACCAAACAAGGAATACCTTTGACATCGAAATGCTTCAC

               751    -    801
RU03158        --> AAGCTCTTTGATGTTGGGATCCTCAAAAGGCAATGCCAGCCATGGCATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- AAGCTCTTTGATGTTGGGATCCTCAAAAGGCAATGCCAGCCATGGCATGG
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> AAGCTCTTTGATGTTGGGATCCTCAAAAGGCAATGCCAGCCATGGCATGG

               801    -    851
RU03158        --> TGCTGAGGTAGGCTTCAAAGGATGTTCGGTCACGATCACTTGAAACAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- TGCTGAGGTAGGCTTCAAAGGATGTTCGGTCACGATCACTTGAAACAAAC
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> TGCTGAGGTAG.......................................

               851    -    901
RU03158        --> ACTATCTCGAAGTCCTCTCCATCTTGTTGTTGATCACCTACTAGCATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ACTATCTCGAAGTCCTCTCCATCTTGTTGTTGATCACCTACTAGCATTTG
ET0140363      <-- ..................................................
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               901    -    951
RU03158        --> CTCTTTAATCTCCTTGTAGATTGAGATTAGCCTAGGAGTGAAATTAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- CTCTTTAATCTCCTTGTAGATTGAGATTAGCCTAGGAGTGAAATTAACGC
ET0140363      <-- ........................................AAATTAACGC
ET0031601      <-- ..................................................
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               951    -   1001
RU03158        --> ATGGAATGCACCATTGAGCTGAGAAGTAGAGTCCAATTGTCTTGCCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ATGGAATGCACCATTGAGCTGAGAAGTAGAGTCCAATTGTCTTGCCAACC
ET0140363      <-- ATGGAATGCACCATTGAGCTGAGAAGTAGAGTCCAATTGTCTTGCCAACC
ET0031601      <-- .TGGAATGCACCATTGAGCTGAGAAGTAGAGTCCAATTGTCTTGCCTACC
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               1001   -   1051
RU03158        --> AGTGAGGCCACAGGCACCTGATTAGGCGTCTGATGGCCCAGAAGATAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- AGTGAGGCCACAGGCACCTGATTAGGCGTCTGATGGCCCAGAAGATAGTG
ET0140363      <-- AGTGAGGCCACAGGCACCTGATTAGGCGTCTGATGGCCCAGAAGATAGTG
ET0031601      <-- AATGAGGCCACAGGCACCTGATTAGGCGTCTGATGGCCCAGAAGATAGTG
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               1051   -   1101
RU03158        --> TCTGTCGTGGTTCGTTAGTAGATTGGTCAAGGTCTGGTTCTCATGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- TCTGTCGTGGTTCGTTAGTAGATTGGTCAAGGTCTGGTTCTC........
ET0140363      <-- TCTGTCGTGGTTCGTTAGTAGATTGGTCAAGGTCTGGTTCTCATGCTTCT
ET0031601      <-- TCTGTCGTGGTTCGTTAGTAGATTGGTCAAGGTCTGGTTCTCATGCTTCT
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               1101   -   1151
RU03158        --> GTTTCTCCTCGTCCTCCAACTGTTCCAGCCTCTGTCTAGTAAAAGGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- ..................................................
CT0034815      <-- ..................................................
ET0074517      <-- ..................................................
ET0094690      <-- ..................................................
ET0074980      <-- ..................................................
ET0105459      <-- ..................................................
CT0067981      <-- ..................................................
CT0040376      <-- ..................................................
RH54BW94       <-- ..................................................
ET0140363      <-- GTTTCTCCTCCTCCTCCAACTGTTCCAGCCTCTGTCTAGTAAAAGGGAAG
ET0031601      <-- GTTTCTCCTCGTCCTCCAACTGTTCCAGCCTCTGTCTAGTAAAAGGGAAG
CT0061732      --> ..................................................
ET0121630      --> ..................................................
ET0032361      --> ..................................................
ET0034396      --> ..................................................
ET0041707      --> ..................................................
ET0044054      --> ..................................................
CT0096026      --> ..................................................
ET0033209      --> ..................................................
CT0026454      --> ..................................................
RH18R90        --> ..................................................
CT0062348      --> ..................................................

               1151   -   1201
RU03158        --> GCTTGGACACCATAGCGATAAATGAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0007310      <-- .............................
CT0034815      <-- .............................
ET0074517      <-- .............................
ET0094690      <-- .............................
ET0074980      <-- .............................
ET0105459      <-- .............................
CT0067981      <-- .............................
CT0040376      <-- .............................
RH54BW94       <-- .............................
ET0140363      <-- GCTTGGACACCATAGCGATtaaattg...
ET0031601      <-- GCTTGGACACCATAGCGATAAATGAGCTC
CT0061732      --> .............................
ET0121630      --> .............................
ET0032361      --> .............................
ET0034396      --> .............................
ET0041707      --> .............................
ET0044054      --> .............................
CT0096026      --> .............................
ET0033209      --> .............................
CT0026454      --> .............................
RH18R90        --> .............................
CT0062348      --> .............................