SNPs of unigene RU03219
               1      -     51
RU03219        --> ACTTACATGGCATTGTTTGAACCAATGCTTCAATTGATCCATATGGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ACTTACATGGCATTGTTTGAACCAATGCTTCAATTGATCCATATAGCGTC
RH11H42        <-- .................actctaatctgagagATTTATCCATATGGCGTC
ET0058383      <-- .......................................CATATGGTGTC
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               51     -    101
RU03219        --> ACATCAAGATAATTACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ACATCAAGATAATTACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH11H42        <-- ACATCAAGATAATTACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
ET0058383      <-- GCATCAAGATGAGTACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH37AN128      <-- ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH38BA1        <-- ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH43BK107      <-- ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH47BO60       <-- ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH52BT37       <-- ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
RH26AB321      --> ..............ACTTGAGCAGCATGCTTTGTGGGTGTTCATTTGGAA
CT0080251      --> ..............................................GGAA
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               101    -    151
RU03219        --> CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH11H42        <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
ET0058383      <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH37AN128      <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH38BA1        <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH43BK107      <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH47BO60       <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH52BT37       <-- CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
RH26AB321      --> CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
CT0080251      --> CACAAGGCCCTGGTCAGGTGCCTGTATTATGGGCAATATCCCTCTCGTAG
ET0006455      --> ..............................GGGCAATATCCCTCTCGTAG
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               151    -    201
RU03219        --> TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH11H42        <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
ET0058383      <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH37AN128      <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH38BA1        <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH43BK107      <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH47BO60       <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH52BT37       <-- TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
RH26AB321      --> TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
CT0080251      --> TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
ET0006455      --> TGAGATGGTTCTCAACGTCGGTTACCCAGTCATGGTATTCCGAGCCTGTT
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               201    -    251
RU03219        --> GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH11H42        <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
ET0058383      <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATT...............
RH37AN128      <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH38BA1        <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH43BK107      <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH47BO60       <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH52BT37       <-- GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
RH26AB321      --> GAGTCAAGTGTTGGAAAGTCGGGTCTAGGTTCATTCGACATCTTGTTGAA
CT0080251      --> GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
ET0006455      --> GAGTCAAGTGTTGGAAAGTCGAGTCTAGGTTCATTCGACATCTTGTTGAA
ET0129131      --> .................................................A
ET0132713      --> .............................................aaatt
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               251    -    301
RU03219        --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH11H42        <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
ET0058383      <-- ..................................................
RH37AN128      <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH38BA1        <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH43BK107      <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH47BO60       <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH52BT37       <-- ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
RH26AB321      --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
CT0080251      --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCAC................
ET0006455      --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
ET0129131      --> ATTCGGAGCAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
ET0132713      --> acggaagcaAAATTTGCTTCCGAACAGATCGCACTTCAAATGTTATACAG
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               301    -    351
RU03219        --> GTCTCAAAACTGCTCCAGCAGGTCTGAAATTTGGAGATAAGATATAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH11H42        <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
ET0058383      <-- ..................................................  Ethylene
RH37AN128      <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH38BA1        <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH43BK107      <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH47BO60       <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH52BT37       <-- GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
CT0008988      <-- .TCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  Control
CT0037793      <-- ..................................................  Control
RH23Z68        <-- ..................................................  WaterDS
CT0079157      <-- ..................................................  Control
CT0093728      <-- ..................................................  Control
CT0093215      <-- ..................................................  Control
CT0072098      <-- ..................................................  Control
CT0051709      <-- ..................................................  Control
CT0017221      <-- ..................................................  Control
RH12I112       --> GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
RH26AB321      --> GTCTCAAAACTGCTCCAGCAGGGCTGAAATTTGGAGATAAGATATAAGAG  WaterDS
CT0080251      --> ..................................................  Control
ET0006455      --> ..................................................  Ethylene
ET0129131      --> GTCTCAAAACTGCTCCAGCAGGTCTGAAATTTGGAGATAAGATATAAGAG  Ethylene
ET0132713      --> GTCTCAAAACTGCTCCAGCAGGTCTGAAATTTGGAGATAAGATATAAGAG  Ethylene
CT0099684      --> ..................................................  Control
CT0091096      --> ..................................................  Control
ET0009830      --> ..................................................  Ethylene
ET0018384      --> ..................................................  Ethylene
ET0058825      --> ..................................................  Ethylene
ET0058962      --> ..................................................  Ethylene
ET0079286      --> ..................................................  Ethylene
ET0099320      --> ..................................................  Ethylene
ET0059365      --> ..................................................  Ethylene
ET0137216      --> ..................................................  Ethylene
ET0100768      --> ..................................................  Ethylene
CT0001329      --> ..................................................  Control

               351    -    401
RU03219        --> ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH11H42        <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
ET0058383      <-- ..................................................
RH37AN128      <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH38BA1        <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH43BK107      <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH47BO60       <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH52BT37       <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
CT0008988      <-- ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
RH26AB321      --> ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
ET0132713      --> ACAGAGATTAAAAACGTTGATGAAGAAATGATTTTGATTAGATGTCCCGA
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               401    -    451
RU03219        --> AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH11H42        <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCG
ET0058383      <-- ..................................................
RH37AN128      <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH38BA1        <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH43BK107      <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH47BO60       <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH52BT37       <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
CT0008988      <-- AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
RH26AB321      --> AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACGGGAACGATCA
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
ET0132713      --> AAAGGACGTTTCTCGGGGTGCAAGCAGGTTGATCTGCACAGGAACGATCA
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               451    -    501
RU03219        --> TACTGAATAGCTCCCACTTTGAATGGTGTACATGTCTCAAAACGACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
RH11H42        <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
ET0058383      <-- ..................................................
RH37AN128      <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
RH38BA1        <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
RH43BK107      <-- TACTGAATAGCTCCCACTTTGAATGGagt.....................
RH47BO60       <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
RH52BT37       <-- TACTGAATAGCTCCCACTTTGAATGGTGT.....................
CT0008988      <-- TACTGAATAGCTCCCACTTTGAATGGTGTACATGTCTCAAAACGACTTCA
CT0037793      <-- ..CTGAATAGCTCCCACTTTGAATGGTGTACATGTCTCAAAACGACTTCA
RH23Z68        <-- .............................ACATGTCTCAAAACGACTTCA
CT0079157      <-- ..........................................atggcgtg
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> TACTGAATAGCTCCCACTTTGAATGGTGT.....................
RH26AB321      --> TACTGAATAGCTCCCACTTTGAATGGTGT.....................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> TACTGAATAGCTCCCACTTTGAATGGTGTACATGTCTa............
ET0132713      --> TACTGAATAGCTCCCACTTTGAATGGTGTACATGTCT.............
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               501    -    551
RU03219        --> ACAGGGCTGAAATTTTGAGGTCAGATAGAAAAGACATATATGAACAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ACAGGGCTGAAATT....................................
CT0037793      <-- ACAGGGCTGAAATTTTGAGGTCAGATAGAAAAGACATATATGAACAACTT
RH23Z68        <-- ACAGGGCTGAAATTTTGAGGTCAGATAGAAAAGACATATATGAACAACTT
CT0079157      <-- ggcGGGCTGAAATTTTGAGGTCAGATAGAAAAGACATATATGAACAACTT
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ....................TCAGATAGAAAAGACATATATGAACAACTT
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               551    -    601
RU03219        --> TGATGAAGAAAGTATTTTGATTAAAGGTTCTGAACAAGATGTTTCAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- TGATGAAGAAAGTATTTTGATTAAAGGTTCTGAACAAGATGTTTCAGGGT
RH23Z68        <-- TGATGAAGAAAGTATTTTGATTAAAGGTTCTGAACAAGATGTTTCAGGGT
CT0079157      <-- TGATGAAGAAAGTATTTTGATTAAAGGTTCTGAACAAGATGTTTCAGGGT
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> TGATGAAGAAAGTATTTTGATTAAAGGTTCTGAACAAGATGTTTCAGGGT
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               601    -    651
RU03219        --> GTGCAAACAGGCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- GTGCAAACAGGCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
RH23Z68        <-- GTGCAAACAGGCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
CT0079157      <-- GTGCAAACAGGCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> GTGCAAACAGGCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
CT0091096      --> ..........GCTGATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
ET0009830      --> ..............ATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
ET0018384      --> ..............ATATGCACAGGAACGAGCGTGCTGAACAGCTCCCAC
ET0058825      --> ........................GAATGAGCGTGCTGAACAGCTCCCAC
ET0058962      --> ........................GAATGAGCGTGCTGAACAGCTCCCAC
ET0079286      --> ........................GAATGAGCGTGCTGAACAGCTCCCAC
ET0099320      --> ........................GAATGAGCGTGCTGAACAGCTCCCAC
ET0059365      --> ...............agaaatagaagacgtagactagaAACAGCTCCCAC
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               651    -    701
RU03219        --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAc.......
RH23Z68        <-- TTCGAATGGTGT......................................
CT0079157      <-- TTCGAATGGTGTAC....................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAA................
CT0091096      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTACAATTTGG
ET0009830      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTACAATTTGG
ET0018384      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTACAATTTGG
ET0058825      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
ET0058962      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
ET0079286      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
ET0099320      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
ET0059365      --> TTCGAATGGTGTACAGGTCTCAAAACGACTCCAACAGGGCTAAAATTCGG
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               701    -    751
RU03219        --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAGGATTT
ET0009830      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAGGATTT
ET0018384      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAGGATTT
ET0058825      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
ET0058962      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
ET0079286      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
ET0099320      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
ET0059365      --> AGGTCAGATAGAAGAGACATAGACGAACAACTTTGATGAAGGAAATATTT
ET0137216      --> .............................................gATTT
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               751    -    801
RU03219        --> TGATCTGAGGTCCCTATCAAGATGTTTCGGGGCGTGCAAACAGGCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> TGATCTGAGGTCCCTATCAAGATGTTTCGGGGCGTGCAAACAGGCTGATC
ET0009830      --> TGATCTGAGGTCCCTATCAAGATGTTTCGGGGCGTGCAAACAGGCTGA..
ET0018384      --> TGATCTGAGGTCCCTATCAAGATGTTTCGGGGCGTGCAAACAGGCTGA..
ET0058825      --> TGATCTGAGGTCCCTATCAAGATGTTTCGG....................
ET0058962      --> TGATCTGAGGTCCCTATCAAGATGTTTCGG....................
ET0079286      --> TGATCTGAGGTCCCTATCAAGATGTTTCGG....................
ET0099320      --> TGATCTGAGGTCCCTATCAAGATGTTTCGG....................
ET0059365      --> TGATCTGAGGTCCCTATCAAGATGTTTCGG....................
ET0137216      --> TGATCTGAGGTCCCTATCAAGATGTTTCGGGGCGTGCAAACAGGCTGATC
ET0100768      --> ..........aagtattgttttcggggtcgttgtctaaactAGGCTGATC
CT0001329      --> ..................................................

               801    -    851
RU03219        --> TGCACAGGAAAATCA-CTTAAAAGTGTTTGGCAGGTGACTCGGCAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ...........................TTGGCAG-TGACTCGGCAGCTGC
CT0093215      <-- ..................................GTGACTCGGCAGCTGC
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> TGCACAGGAAAATCAACTTAAAAGTGTTTGGCAGGTGACTCGGCAG....
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> TGCACAGGAAAATCA-CTTAAAAGTGTTTGGCAGGTGACTCGGCAGCTGC
ET0100768      --> TGCACAGGAAAATCA-CTTAAAAGTGTTTGGCAGGTGACTCGGCAGCTGC
CT0001329      --> ..................................................

               851    -    901
RU03219        --> TGCGCAGGTCGCTCGGCAGCTGCTGCGCAGCTTCTCGGCAGCTGCTGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- TGCGCAGGTCGCTCGGCAGCTGCTGCGCAGCTTCTCGGCAGCTGCTGCGC
CT0093215      <-- TGCGCAGGTCGCTCGGCAGCTGCTGCGCAGCTTCTCGGCAGCTGCTGCGC
CT0072098      <-- ..................................................
CT0051709      <-- ..................................................
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> TGCGCAGGTCGCTCGGCAGCTGCTGCGCAGCTTCTCGGCAGCTGCTGCGC
ET0100768      --> TGCGCAGGTCGCTCGGCAGCTGCTGCGCAGCTTCTCGGCAGCTGCTGCGC
CT0001329      --> ..................................................

               901    -    951
RU03219        --> AGGGTCTCGGCAGCGGTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- AGGGTCTCGGCAGCGGTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
CT0093215      <-- AGGGTCTCGGCAGCGGTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
CT0072098      <-- ............GCGGTCTGGTTCTGTTCAAA-CTTCCGGCGGCCGGTTC
CT0051709      <-- ...............GTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
CT0017221      <-- ..................................................
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> AGGGTCTCGGCAGCGGTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
ET0100768      --> AGGGTCTCGGCAGCGGTCTGGTTCTGTTCAAAACTTCCGGCGGCCGGTTC
CT0001329      --> ..................................................

               951    -   1001
RU03219        --> AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTTT
CT0093215      <-- AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTTT
CT0072098      <-- AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTTT
CT0051709      <-- AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTTT
CT0017221      <-- ......................................TTCTGGGCTTTT
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> AGGCCTTTTCCGGCCGGTTCCGGCGATT......................
ET0100768      --> AGGCCTTTTCCGGCCGGTTCCGGCGATTCTGAGGCCGGTTCTGGGCTTT.
CT0001329      --> ..................................................

               1001   -   1051
RU03219        --> -GGGATCAATGGCTTTGATATGAGCTAGGTTTTGGAGGTTTTTTGTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- -GAGATCAATGG......................................
CT0093215      <-- TGAGATCAATGG......................................
CT0072098      <-- -GGGATCAATGGCTTTGATATGAGCTAGGTTTTGGAGGTTTTTTGTAGGT
CT0051709      <-- -GGGATCAATGGCTTTGATATGAGCTAGGTTTTGGAGGTTTTT-GTAGGT
CT0017221      <-- -GGGATCAATGGCTTTGATATGAGCTAGGTTTTGGAGGTTTTTTGTAGGT
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..................................................

               1051   -   1101
RU03219        --> TTGGAAAAATGACTTCGATTGATGATGAACTCTACTCTTGTC-AATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- TTGGAAAAATGACTTCGATTGATGATGAACTCTACTCTTGTC-AATTTTC
CT0051709      <-- TTGGAAAAATGACTTCGATTGATGATGAACTCTACTCTTGTC-AATTTTC
CT0017221      <-- TTGGAAAAATGACTTCGATTGATGATGAACTCTACTCTTGTC-AATTTTC
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> ..aggAAAATGACTTCGATTGATGATGAACTCTACTCTTGTCTAATTTTC

               1101   -   1151
RU03219        --> GATTCTAATTCTAGAGCAACTTCGTGCTGATAACGTGTTTAAGGATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ..................................................
RH11H42        <-- ..................................................
ET0058383      <-- ..................................................
RH37AN128      <-- ..................................................
RH38BA1        <-- ..................................................
RH43BK107      <-- ..................................................
RH47BO60       <-- ..................................................
RH52BT37       <-- ..................................................
CT0008988      <-- ..................................................
CT0037793      <-- ..................................................
RH23Z68        <-- ..................................................
CT0079157      <-- ..................................................
CT0093728      <-- ..................................................
CT0093215      <-- ..................................................
CT0072098      <-- GATTCTAATTCTAGAGCAACTTCGTGCTGATAACGTGTTTAAGGATAATC
CT0051709      <-- GATTCTAATTCTAGAGCAACTTCGTGCTGATAACGTGTTTAAGGATAATC
CT0017221      <-- GATTCTAATTCTAGAGCAACTTCGTGCTGATAACGTGTTTAAGGATAATC
RH12I112       --> ..................................................
RH26AB321      --> ..................................................
CT0080251      --> ..................................................
ET0006455      --> ..................................................
ET0129131      --> ..................................................
ET0132713      --> ..................................................
CT0099684      --> ..................................................
CT0091096      --> ..................................................
ET0009830      --> ..................................................
ET0018384      --> ..................................................
ET0058825      --> ..................................................
ET0058962      --> ..................................................
ET0079286      --> ..................................................
ET0099320      --> ..................................................
ET0059365      --> ..................................................
ET0137216      --> ..................................................
ET0100768      --> ..................................................
CT0001329      --> GATTCTAATTCTAGAGCAACTTCGTGCTGATAACGTGTTTAAGGATA...

               1151   -   1201
RU03219        --> AAAATTGACAGAGAGAGAGAGAGAGTTTCG.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI28       <-- ...............................
RH11H42        <-- ...............................
ET0058383      <-- ...............................
RH37AN128      <-- ...............................
RH38BA1        <-- ...............................
RH43BK107      <-- ...............................
RH47BO60       <-- ...............................
RH52BT37       <-- ...............................
CT0008988      <-- ...............................
CT0037793      <-- ...............................
RH23Z68        <-- ...............................
CT0079157      <-- ...............................
CT0093728      <-- ...............................
CT0093215      <-- ...............................
CT0072098      <-- AAAATTGACAGAGAGAGAGAGAGAGTTTacg
CT0051709      <-- AAAATTGACAGAGAGAGAGAGAGAGTTTCG.
CT0017221      <-- AAAA...........................
RH12I112       --> ...............................
RH26AB321      --> ...............................
CT0080251      --> ...............................
ET0006455      --> ...............................
ET0129131      --> ...............................
ET0132713      --> ...............................
CT0099684      --> ...............................
CT0091096      --> ...............................
ET0009830      --> ...............................
ET0018384      --> ...............................
ET0058825      --> ...............................
ET0058962      --> ...............................
ET0079286      --> ...............................
ET0099320      --> ...............................
ET0059365      --> ...............................
ET0137216      --> ...............................
ET0100768      --> ...............................
CT0001329      --> ...............................