SNPs of unigene RU03416
               0      -     50
RU03416        --> .TTTTTTTTTATGAATGAAATAGTTTCTTATTAATTCTTGCGAAGTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- .TTTTTTTTTATGAATGAAATAGTTTCTTATTAATTCTTGCGAAGTATAT
CT0058286      <-- ....................................CTTGCGAAGTATAT
CT0024016      <-- .......................................GCGAAGTATAT
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> tTTTTTTTATATGAATGAAATAGTTTCTTATTAATTCTTGCGAAGTATAT
CT0037108      --> ............GAATGAAATAGTTTCTTATTAATTCTTGCGAAGTATAT
CT0041488      --> ............GAATGAAATAGTTTCTTATTAATTCTTGCGAAGTATAT
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               50     -    100
RU03416        --> ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0058286      <-- ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0024016      <-- ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0037108      --> ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0041488      --> ATGTAACACTTGTACTTGTACATGCACGGTGAGCTAGGCACCACCAAAAC
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               100    -    150
RU03416        --> AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAACTGTGAAGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAACTGTG........
CT0058286      <-- AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAACTGTGAAGGAAAA
CT0024016      <-- AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAACTGTGAAGGAAAA
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAACTGTGAAGGAAAA
CT0037108      --> AGTTCAAAA-TAATACTGGACAACTCAAATTCTAAAA.............
CT0041488      --> AGTTCAAAAATAATACTGGACAACTCAAATTCTAAAACTGTGAAAGGAAA
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               150    -    200
RU03416        --> AAAAACAATTAAAACATAAAAATCATCAACCACCTCTCGCCAAACAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- AAAAACAATTAAAACATAAAAATCATCAACCACCTCTCGCCAAACAAAAC
CT0024016      <-- AAAAA.............................................
CT0107271      <-- .....................................CGCCAA-CAAAAC
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> AAAA-CAATTAAAACATAAAAATCATCAACCACCTCTCGCCAAACAAAAC
CT0037108      --> ..................................................
CT0041488      --> AAAAACAATTAAAACATAAAAATCATCAACCACCTCTCGCC.........
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               200    -    250
RU03416        --> ACAGAGCTAGAGAGCAATAAGCTAGAGCTAAGCTTACAGTTTCCATGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ACAGAGCTAGAGAGCAATAAGCTAGAGCTAAGCTTACAGTTTCCATGCAT
CT0024016      <-- ..................................................
CT0107271      <-- ACAGAGCTAGAGAGCAATAAGCTAGAGCTAAGCTTACAGTTTCCATGCAT
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ACAGAGCTAGAGAGCAATAAGCTAGAGCTAAGCTTACAGTTTCCATGCA.
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               250    -    300
RU03416        --> GACGACGAGGACGACCCATCTTCTTCTACCTCCTCTTGTTCTTGCTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- GACGACGAGGACGACCCATCTTCTTCTACCTCCTCTT.............
CT0024016      <-- ..................................................
CT0107271      <-- GACGACGAGGACGACCCATCTTCTTCTACCTCCTCTTGTTCTTGCTCCCA
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ...........................................GCTCCCA
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               300    -    350
RU03416        --> ATCAGCAAAGAAAAATA-GAAGAGAGTCCTGAACAGAAACCCCCAC-GCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ATCAGCAAAGAAAAATA-GAAGAGAGTCCTGAACAGAAACCCCCAC-GCC
CT0057421      <-- ..........AAAAATAAGAAGAGAGTCCTGAACAGAAACCCCCACCGCC
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ATCAGCAAAGAAAAATA-GAAGAGAGTCCTGAACAGAAACCCCCAC-GCC
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               350    -    400
RU03416        --> ACCGTGATCCACAAGCAATTCCACTTGCTCAGCTGAGTCACTCCCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ACCGTGATCCACAAGCAATTCCACTTGCTCAGCTGAGTCACTCCCTGCTG
CT0057421      <-- ACCGTGATCCACAAGCAATTCCACTTGCTCAGCTGAGTCACTCCCTGCTG
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ACCGTGATCCACAAGCAATTCCACTTGCTCAGCTGAGTCACTCCCTGCTG
ET0091102      --> .CCGTGATCCACAAGCAATTCCACTTGCTCAGCTGAGTCACTCCCTGCTG
ET0006616      --> ............................TCAGCTGAGTCACTCCCTGCTG
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               400    -    450
RU03416        --> CTTCAATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- CTTCAATAAATCACTCCCAGTCG...........................
CT0057421      <-- CTTCAATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
ET0131296      <-- ................................TCGTCCTCGTAATCGTCA
ET0133524      <-- ................................TCGTCCTCGTAATCGTCA
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> CTTCAATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
ET0091102      --> CTTCAATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
ET0006616      --> CTTCAATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
ET0073005      --> ....AATAAATCACTCCCAGTCGTTAAGCAAGTCGTCCTCGTAATCGTCA
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               450    -    500
RU03416        --> TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
ET0131296      <-- TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
ET0133524      <-- TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
CT0095295      <-- .............................AGCTTCACCTTCAGCGCCGCC
CT0123040      <-- ...............................CTTCACCTTCAGCGCCGCC
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
ET0091102      --> TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
ET0006616      --> TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
ET0073005      --> TCCCCAGCGTCTCGCTCATGCTGCCCAGAAGCTTCACCTTCAGCGCCGCC
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               500    -    550
RU03416        --> GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- GGGACCGAAGCCAGCGGAGTATTATCAAAT....................
ET0131296      <-- GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
ET0133524      <-- GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
CT0095295      <-- GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
CT0123040      <-- GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
ET0033441      <-- ..........................AAATATCTGTACACCCCTCACGAA
ET0043857      <-- ...........................AATATCTGTACACCCCTCACGAA
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> GGGACCGAAGCCAGCGGAGTATTATCAAATATCT................
ET0091102      --> GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
ET0006616      --> GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
ET0073005      --> GGGACCGAAGCCAGCGGAGTATTATCAAATATCTGTACACCCCTCACGAA
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               550    -    600
RU03416        --> GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
ET0133524      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
CT0095295      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
CT0123040      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
ET0033441      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTC-TAGGGGG
ET0043857      <-- GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGGG
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> GCACTTAGTCGGGTCCTGAAACTCGTT.......................
ET0006616      --> GCACTTAGT.........................................
ET0073005      --> GCACTTAGTCGGGTCCTGAAACTCGTTCTGCATTACAGCCTCGTAGGGG-
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               600    -    650
RU03416        --> TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
ET0133524      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
CT0095295      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
CT0123040      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
ET0033441      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
ET0043857      <-- TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> TACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
RH16N30        --> .ACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
RH36AJ189      --> .ACTTCACTAGTGACATGTAGTGGAACCAAATCCAGTAGTCCGGGATTCT
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               650    -    700
RU03416        --> ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ATTACGGTTTAT-GAAGAAGCCACTGAA......................
ET0133524      <-- ATTACGGTTTAT-GAAGAAGCCACTGAA......................
CT0095295      <-- ATT...............................................
CT0123040      <-- ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
ET0033441      <-- ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
ET0043857      <-- ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
CT0001999      <-- ..........................................CTAAGATT
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ATTtacgg..........................................
RH16N30        --> ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
RH36AJ189      --> ATTACGGTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
ET0083767      --> ......GTTTAT-GAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
ET0087675      --> .....gtTTTATTGAAGAAGCCACTGAAGAGAAGGAAGTAGGCTAAGATT
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               700    -    750
RU03416        --> GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGAC............
ET0033441      <-- GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
ET0043857      <-- GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
CT0001999      <-- GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
CT0089199      <-- ...............TAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
RH36AJ189      --> GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
ET0083767      --> GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
ET0087675      --> GCCACGACTATAGTGTAGCCGAGCATGACGTGGGGGACGACGCCGGAGAG
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               750    -    800
RU03416        --> GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAGATGATGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- GAATGTGACGAATGAGCTTCCGGCCCAGAAC...................
ET0043857      <-- GAATGTGACGAATGAGCTTCCGGCCCAGAAC...................
CT0001999      <-- GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAGATGATGAGGA
CT0089199      <-- GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAGATGATGAGGA
CT0045502      <-- .........................................TGATGAGGA
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAG..........
RH36AJ189      --> GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAG..........
ET0083767      --> GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAGATGATGAGGA
ET0087675      --> GAATGTGACGAATGAGCTTCCGGCCCAGAACGAGGCGAAGATGATGAGGA
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               800    -    850
RU03416        --> AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0089199      <-- AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0045502      <-- AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
ET0087675      --> AGTAGAATAGGAACCCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0013551      --> ..............CCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0031083      --> ..............CCCGAGAGCCCGCCGTCGAGGCCCACGGCCCAGAAT
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               850    -    900
RU03416        --> GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................  Control
CT0058286      <-- ..................................................  Control
CT0024016      <-- ..................................................  Control
CT0107271      <-- ..................................................  Control
CT0057421      <-- ..................................................  Control
ET0131296      <-- ..................................................  Ethylene
ET0133524      <-- ..................................................  Ethylene
CT0095295      <-- ..................................................  Control
CT0123040      <-- ..................................................  Control
ET0033441      <-- ..................................................  Ethylene
ET0043857      <-- ..................................................  Ethylene
CT0001999      <-- GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCG..........  Control
CT0089199      <-- GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCGC  Control
CT0045502      <-- GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCAC  Control
CT0075471      <-- .......CGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCGC  Control
CT0027486      <-- ..................................................  Control
CT0081438      <-- ..................................................  Control
CT0080179      --> ..................................................  Control
CT0037108      --> ..................................................  Control
CT0041488      --> ..................................................  Control
CT0132497      --> ..................................................  Control
ET0091102      --> ..................................................  Ethylene
ET0006616      --> ..................................................  Ethylene
ET0073005      --> ..................................................  Ethylene
RH16N30        --> ..................................................  WaterDS
RH36AJ189      --> ..................................................  WaterDS
ET0083767      --> GTGATGGCAGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCG.  Ethylene
ET0087675      --> GTGATGGCAGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCC..  Ethylene
CT0013551      --> GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCGC  Control
CT0031083      --> GTGATGGCGGAGAACGCGGCGGAGAGGAAAACCAGCGCCGGAAGAGCCGC  Control
CT0080467      --> ..................................................  Control
ET0106903      --> ..................................................  Ethylene
ET0019612      --> ..................................................  Ethylene
ET0043718      --> ..................................................  Ethylene

               900    -    950
RU03416        --> TAGAGAGTGTGAAAGAACGTAGGAGGATCTACGGTAGGCATTGTAGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- TAGAGAGTGTGAAAGAA.................................
CT0045502      <-- TAGAGAGTGTGAAAGAACGTAGGAAGATCTAC..................
CT0075471      <-- TAGAGAGTGTGAAAGAACGTAGGAGGATCTACGGTAGGCATTGTAGGCGG
CT0027486      <-- .......................AGGATCTACGGTAGGCATTGTAGGCGG
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> TAGAGAGTGTGAAAGAACGTAGGAGGATCTACGGTAGGCATTGTAGGCGG
CT0031083      --> TAGAGAGTGTGAAAGAACGTAGGAGGATCTACGGTAGGCATTGTAGGCGG
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               950    -   1000
RU03416        --> TCTCTCTCATGAAGATGTAGCGTTCTTGGAAGAAGACGGGTAAGGCGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- TCTCTCTCATGAAGATGTAGCGTTCTTGGAGGAAGACGGGTAAGGCGTCG
CT0027486      <-- TCTCTCTCATGAAGATGTAGCGTTCTTGGAAGAAGACGGGTAAGGCGTCG
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> T.................................................
CT0031083      --> T.................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1000   -   1050
RU03416        --> GCGCAGGTGTAGAAGGTGGTGGACATGGCGAATG-CGATGAACCCGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- GCGCAGGTGTAGAAGGTGGTGGACATGGCGAATGTCGATGAACCCGAGGC
CT0027486      <-- GCGCAGGTGTAGAAGGTGGTGGACATGGCGAATG-CGATGAACCCGAGGC
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ........tTAGAAGGTGGTGGACATGGCGAATG-CGATGAACCCGAGGC
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1050   -   1100
RU03416        --> GTTCTTGGACTCCCTTAGGGGTATTATCGAG-ATTCCAGAACATGGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- GTTCTTGGACTCCCTTAGGGGTATTATCGAGGATTCCAGAACATGGTGGC
CT0027486      <-- GTTCTTGG..........................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> GTTCTTGGACTCCCTTAGGGGTATTATCGAG-ATTCCAGAACATGGTGGC
ET0106903      --> ..................................................
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1100   -   1150
RU03416        --> GAGGATGAACCCGGTGACCACGACTGCGCCGAGCCGGATTCCAAACAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> GAGGATGAACCCGGTGACCACGACTGCGCCGAGCCGGATTCCAAACAGCT
ET0106903      --> ....................agaccgaagaccggaattaccaAAACAGCT
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1150   -   1200
RU03416        --> CCGGCATTCGTCTCGAGTTTTTCATGGAGCGTCTCGCGAGCACGGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- .............CGAGTTTTTCATGGAGCGTCTCGCGAGGACGGCCATT
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> CCGGCATTCGTCTCGAGTTTTTCATGGAGCGTCTCGCGAGGACGGCCATT
ET0106903      --> CCGGCATTCGTCTCGAGTTTTTCATGGAGCGTCTCGCGAGCACGGCCATT
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1200   -   1250
RU03416        --> TCGATCCAGATGGGATTGGCGAAGGTGGGGACCATGGAGTTGGGGCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- TCGATCCAGATGGGGTTGGCGAAGGTGGGGACCATGGAGTTGGGGCTGGC
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> TCGATCCAGATGGGATTGGCGAAGGTGGGGACCATGGAGTTGGGGCTGGC
ET0106903      --> TCGATCCAGATGGGATTGGCGAAGGTGGGGACCATGGAGTTGGGGCTGGC
ET0019612      --> ..................................................
ET0043718      --> ..................................................

               1250   -   1300
RU03416        --> GTCGTTGTTGGTGGCGCCGGAGACGAGCTTGCCGCGGGAAATGCTGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- GTCGTTGTTTGTGGCGCCGGAGACGAGCTTGCCGCGGGAAATGCTGGCGG
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> GTCGTTGTTGGTGG....................................
ET0106903      --> GTCGTTGTTGGTGGCGCCGGAGACGAGCTTGCCGCGGGAAATGCTGGCGG
ET0019612      --> ........................GAGCTTGCCGCGGGAAATGCTGGCGG
ET0043718      --> .............................................GGCGG

               1300   -   1350
RU03416        --> AGATGGCTTCTTGGAGGGGAACGACGTGTCGTATGTCCGTGGCGGAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- AGATGGCTTCTTGGAGGGGAACGACGTGTCGTATGTCGGTGGCGGAGCGG
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> AGATGGCTTCTTGGAGGGGAACGACGTGTCGTATGTCCGTGGCGGAGCGG
ET0019612      --> AGATGGCTTCTTGGAGGGGAACGACGTGTCGTATGTCCGTGGCGGAGCGG
ET0043718      --> AGATGGCTTCTTGGAGGGGAACGACGTGTCGTATGTCCGTGGCGGAGCGG

               1350   -   1400
RU03416        --> TAGTGATCGCTGTGCTTCATGGTCTGCCAGGAGTTGTTGAACTCGACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- TAGTGATCGCTGTGCTTCATGGTCTG........................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> TAGTGATCGCTGTGCTTCA...............................
ET0019612      --> TAGTGATCGCTGTGCTTCATGGTCTGCCAGGAGTTGTTGAACTCGACGAG
ET0043718      --> TAGTGATCGCTGTGCTTCATGGTCTGCCAGGAGTTGTTGAACTCGACGAG

               1400   -   1450
RU03416        --> GGATTGGGTCCC-GCCGGGGGAGCCTTCCAGTTCTCGGATGAGGTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- ..................................................
CT0058286      <-- ..................................................
CT0024016      <-- ..................................................
CT0107271      <-- ..................................................
CT0057421      <-- ..................................................
ET0131296      <-- ..................................................
ET0133524      <-- ..................................................
CT0095295      <-- ..................................................
CT0123040      <-- ..................................................
ET0033441      <-- ..................................................
ET0043857      <-- ..................................................
CT0001999      <-- ..................................................
CT0089199      <-- ..................................................
CT0045502      <-- ..................................................
CT0075471      <-- ..................................................
CT0027486      <-- ..................................................
CT0081438      <-- ..................................................
CT0080179      --> ..................................................
CT0037108      --> ..................................................
CT0041488      --> ..................................................
CT0132497      --> ..................................................
ET0091102      --> ..................................................
ET0006616      --> ..................................................
ET0073005      --> ..................................................
RH16N30        --> ..................................................
RH36AJ189      --> ..................................................
ET0083767      --> ..................................................
ET0087675      --> ..................................................
CT0013551      --> ..................................................
CT0031083      --> ..................................................
CT0080467      --> ..................................................
ET0106903      --> ..................................................
ET0019612      --> GGATTGGGTCCC-GCCGGGGGAGCCTTCCAGTTCTCGGATGAGGTCCAGA
ET0043718      --> GGATTGGGTCCCCGCCGGGGGAGCCTTCCAGTTCTCGGATGAGGTCCAGA

               1450   -   1500
RU03416        --> GCGAACTCGGTTTTGTTTTCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~
CT0000237      <-- .......................
CT0058286      <-- .......................
CT0024016      <-- .......................
CT0107271      <-- .......................
CT0057421      <-- .......................
ET0131296      <-- .......................
ET0133524      <-- .......................
CT0095295      <-- .......................
CT0123040      <-- .......................
ET0033441      <-- .......................
ET0043857      <-- .......................
CT0001999      <-- .......................
CT0089199      <-- .......................
CT0045502      <-- .......................
CT0075471      <-- .......................
CT0027486      <-- .......................
CT0081438      <-- .......................
CT0080179      --> .......................
CT0037108      --> .......................
CT0041488      --> .......................
CT0132497      --> .......................
ET0091102      --> .......................
ET0006616      --> .......................
ET0073005      --> .......................
RH16N30        --> .......................
RH36AJ189      --> .......................
ET0083767      --> .......................
ET0087675      --> .......................
CT0013551      --> .......................
CT0031083      --> .......................
CT0080467      --> .......................
ET0106903      --> .......................
ET0019612      --> GCGAACTCGGTTTTGTTTTCGGA
ET0043718      --> GCGAACTCGG.............