SNPs of unigene RU03680
               1      -     51
RU03680        --> CAACAACATTTCTTTGGAAACGAATTAGCCTCACCACTCCAGCACCGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> CAACAACATTTCTTTGGAAACGAATTAGCCTCACCACTCCAGCACCGCGC
CT0124615      --> CAACAACATTTCTTTGGAAACGAATTAGCCTCACCACTCCAGCACCGCGC
CT0126177      --> CAACAACATTTCTTTGGAAACGAATTAGCCTCACCACTCCAGCACCGCGC
CT0134618      --> .....................GAATTAGCCTCACCACTCCAGCACCGCGC
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               51     -    101
RU03680        --> AACCTCAGAGTGCTAGTGTCCATTGAAA-TGACGTCGTTTCTGCACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> AACCTCAGAGTGCTAGTGTCCATTGAAAATGACGTCGTTTCTGCACTTCC
CT0124615      --> AACCTCAGAGTGCTAGTGTCCATTGAAA-TGACGTCGTTTCTGCACTTCC
CT0126177      --> AACCTCAGAGTGCTAGTGTCCATTGAAA-TGACGTCGTTTCTGCACTTCC
CT0134618      --> AACCTCAGAGTGCTAGTGTCCATTGAAA-TGACGTCGTTTCTGCACTTCC
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               101    -    151
RU03680        --> CTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCC-TCGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> CTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCCCTCGCAGC
CT0124615      --> CTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCT-CCC-TCGCAGC
CT0126177      --> CTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCC-TCGCAGC
CT0134618      --> CTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCC-TCGCAGC
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               151    -    201
RU03680        --> TCGCCCCAATCCCACCTCGCTCTCTCAGACCCGGTTCAGTGTTAAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> TCGCCCCAATCCCACCTCGCTCTGTCAGACCCGGTTCAGTGTTAAATGCA
CT0124615      --> TCGCCCCAATCCCACCTCGCTCTGTCAGACCCGGTTCAGTGTTAAATGCA
CT0126177      --> TCGCCCCAATCCCACCTCGCTCTGTCAGACCCGGTTCAGTGTTAAATGCA
CT0134618      --> TCGCCCCAATCCCACCTCGCTCTGTCAGACCCGGTTCAGTGTTAAATGCA
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               201    -    251
RU03680        --> GGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> GGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCG.....
CT0124615      --> GGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCA..
CT0126177      --> GGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGG.......
CT0134618      --> GGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATA
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               251    -    301
RU03680        --> GACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> GACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAG
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               301    -    351
RU03680        --> TGGCTTTGTTGGTTCTGCTATATGTAAGGctgcggtgtccaaaggcatag
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> TGGCTTTGTTGGTTCTGCTATATGTAAGG.....................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               351    -    401
RU03680        --> agggcgtaggtgtgagcaggtcggggcggccgacctactccggttcatgg
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               401    -    451
RU03680        --> atTGATCAGGTTAATTGGGTACCAGGAGACGTTTTTTATGTAAATTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..........TTAATTGGGTACCAGGAGACGTTTTTTATGTAAATTGGGA
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..TGATCAGGTTAATTGGGTACCAGGAGACGTTTTTTATGTAAATTGGGA
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               451    -    501
RU03680        --> TGAAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- TGAAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
RH44BK111      <-- ....GTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
RH47BP61       <-- ....GTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
ET0097870      <-- .........ctTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> TGAAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTG
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               501    -    551
RU03680        --> GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
RH44BK111      <-- GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
RH47BP61       <-- GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
ET0097870      <-- GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
CT0077740      <-- ....CGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
ET0082514      <-- .........AACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
CT0094807      <-- ................................................CT
CT0005343      <-- .................................................T
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> GCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCATTGCT
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               551    -    601
RU03680        --> GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
RH44BK111      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
RH47BP61       <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
ET0097870      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
CT0077740      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
ET0082514      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
CT0094807      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
CT0005343      <-- GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCAGT
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> GTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTT...............
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               601    -    651
RU03680        --> GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
RH44BK111      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
RH47BP61       <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
ET0097870      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
CT0077740      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
ET0082514      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
CT0094807      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
CT0005343      <-- GCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTTACAG
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> .....................ATTTCTACTTTCATCTGGATACTTTACAG
ET0118011      --> ....................atTTTCTACTTTCATCTGGATACTTTACAG
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               651    -    701
RU03680        --> GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
RH47BP61       <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
ET0097870      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAA.......
CT0077740      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCT......................
ET0082514      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCA........
CT0094807      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
CT0005343      <-- GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
ET0026765      <-- .................................AATATCCCAACTCTGGC
CT0057540      <-- .............................................CTGGC
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
ET0118011      --> GAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGC
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               701    -    751
RU03680        --> GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
RH47BP61       <-- GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
CT0005343      <-- GTTGTGTTAA........................................
ET0026765      <-- GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
CT0057540      <-- GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
ET0118011      --> GTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATT
ET0016326      --> ..................TTCATATATGGGAAAAGGAAGGTCGATGGATT
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               751    -    801
RU03680        --> TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
RH47BP61       <-- TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- TGAGATTCCTTTTGGATCTGATAGGAGAACCAGT................
CT0005343      <-- ..................................................
ET0026765      <-- TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
CT0057540      <-- TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
ET0118011      --> TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
ET0016326      --> TGAGATTCCTTT-GGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGT
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               801    -    851
RU03680        --> GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCT
RH47BP61       <-- GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCT
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- GCTACTGAGAGCTTT...................................
CT0057540      <-- GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCT
ET0084005      <-- ...ACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCT
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCTGATCT
ET0118011      --> GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCTGATCT
ET0016326      --> GCTACTGAGAGCTTTACCAAACCATTGAGTTCTCT...............
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               851    -    901
RU03680        --> GCTCCTAGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- GCTCCTAGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCA
RH47BP61       <-- GCTCCTAGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCA
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- GCTCCTAGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCA
ET0084005      <-- GCTCCTAGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCA
CT0074930      <-- ..................................................
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> GCTCTTAGCTCCA.....................................
ET0118011      --> GCTCTTAGCTCC......................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               901    -    951
RU03680        --> ATGCAATAAGAGACGATGACTTCTTCGG-CATTTTTACT-ATTGCACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ATGCAATAAGAGACGATGACTTCTTCGG-CATTTTTACT-ATTGCACAAA
RH47BP61       <-- ATGCAATAAGAGACGATGACTTCTTCGG-CATTTTTACT-ATTGCACAAA
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ATGCA.............................................
ET0084005      <-- ATGCAATAAGAGACGATGACTTCTTCGG-CATTTT-ACT-ATTGCACAAA
CT0074930      <-- .....ATAAGAGACGATGACTTCTTCGGTCATTTTTACTTATTGCACAAA
ET0138698      <-- ..................................................
CT0029416      <-- ..................................................
ET0002395      <-- ..................................................
ET0002827      <-- ..................................................
ET0002939      <-- ..................................................
ET0138175      <-- ..................................................
ET0003034      <-- ..................................................
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               951    -   1001
RU03680        --> TTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGAATATGTTTTTGTATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- TTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGAATATGTTTTTGTATACAG
RH47BP61       <-- TTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGAATATGTTTTTGTATACAG
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- TTAA..............................................
CT0074930      <-- TTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGAATATGTTTTTGTATACAG
ET0138698      <-- ....................................GTTTTTGTATACAG
CT0029416      <-- .....................................TTTTTGTATACAG
ET0002395      <-- .....................................TTTTTGTATACAG
ET0002827      <-- ......................................TTTTGTATACAG
ET0002939      <-- ......................................TTTTGTATACAG
ET0138175      <-- ......................................TTTTGTATACAG
ET0003034      <-- ............................................ATACAG
ET0009791      <-- ..................................................
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               1001   -   1051
RU03680        --> AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
RH47BP61       <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0138698      <-- AATTAGCAGGTGATGGTTATACAAACCGGTCTGACTATCACAGAAAACCT
CT0029416      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0002395      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0002827      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0002939      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0138175      <-- AATTAGCAGGTGATGGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0003034      <-- AATTAGCAGGTGATAGTTATACAAACCGGTCTGACTATCACAGAAAACCT
ET0009791      <-- ........................................CAGAAAACCT
ET0016120      <-- ..................................................
ET0013513      <-- ..................................................
ET0028957      <-- ..................................................
ET0036893      <-- ..................................................
ET0121129      <-- ..................................................
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> ..................................................
CT0082648      --> ..................................................

               1051   -   1101
RU03680        --> GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................  Control
RH44BK111      <-- GTTTCCGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGc......  WaterDS
RH47BP61       <-- GTTTCCGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGc......  WaterDS
ET0097870      <-- ..................................................  Ethylene
CT0077740      <-- ..................................................  Control
ET0082514      <-- ..................................................  Ethylene
CT0094807      <-- ..................................................  Control
CT0005343      <-- ..................................................  Control
ET0026765      <-- ..................................................  Ethylene
CT0057540      <-- ..................................................  Control
ET0084005      <-- ..................................................  Ethylene
CT0074930      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Control
ET0138698      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
CT0029416      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Control
ET0002395      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0002827      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0002939      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0138175      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0003034      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0009791      <-- GTTTCTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0016120      <-- ...ctTGCAACCCAGTGTTGGAGGGAGGCGTTAAGTTATGTTGTACTGCA  Ethylene
ET0013513      <-- ..................................................  Ethylene
ET0028957      <-- ..................................................  Ethylene
ET0036893      <-- ..................................................  Ethylene
ET0121129      <-- ..................................................  Ethylene
CT0124316      --> ..................................................  Control
CT0124615      --> ..................................................  Control
CT0126177      --> ..................................................  Control
CT0134618      --> ..................................................  Control
CT0053389      --> ..................................................  Control
ET0118392      --> ..................................................  Ethylene
ET0118011      --> ..................................................  Ethylene
ET0016326      --> ..................................................  Ethylene
CT0004238      --> ........................GAGGCGTTAAGTTATGTTGTACTGCA  Control
CT0035515      --> .............................tTTAAGTTATGTTGTACTGCA  Control
CT0082648      --> .....................................ATGTTGTACTGCA  Control

               1101   -   1151
RU03680        --> AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0138698      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
CT0029416      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0002395      <-- AAGATGAAAGAAATCATTTTGTAAAAACTTCCTTTGAATCAAACCTCTTA
ET0002827      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0002939      <-- AAGATGAA-GAAATCATTTTGTAAAAACTTCCTTTGAATCAAACCTCTTA
ET0138175      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0003034      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0009791      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0016120      <-- AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
ET0013513      <-- .......................................CAAACCTCTTA
ET0028957      <-- ........................................AAACCTCTTA
ET0036893      <-- ........................................AAACCTCTTA
ET0121129      <-- ............................................CTCTTA
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
CT0035515      --> AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA
CT0082648      --> AAGATGAA-GAAATCATTTTGTAAAA-CTTCCTTTGAATCAAACCTCTTA

               1151   -   1201
RU03680        --> CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- CACTTT-CAT........................................
ET0138698      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
CT0029416      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0002395      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0002827      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0002939      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0138175      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0003034      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0009791      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTT......
ET0016120      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0013513      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0028957      <-- CACTTT-CATATTTAG-CCAAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0036893      <-- CACTTTTCATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
ET0121129      <-- CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> CACTTT-CATATTTAGTC-AAGTAGAATTCGTTG................
CT0035515      --> CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT
CT0082648      --> CACTTT-CATATTTAG-C-AAGTAGAATTCGTTGACCGGCTGTTAAGAAT

               1201   -   1251
RU03680        --> TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAAAC-AGTAA-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAAAT
CT0029416      <-- TTGTATTGGGGAG-CCTTTGGGCTTATGATATATAAGTAA-C-AGTAA-T
ET0002395      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0002827      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0002939      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0138175      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0003034      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAACCTAGTAACT
ET0009791      <-- ..................................................
ET0016120      <-- TTGTATTGGGGAG-CCTTTGGGCTTATGATATATAAGTAA-C-AGTAA-T
ET0013513      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0028957      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0036893      <-- TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
ET0121129      <-- TTGTATCGGGGAGGCCTTTGGCCTTATGATATATAAGTAAAC-AGTAA-T
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T
CT0082648      --> TTGTATCGGGGAG-CCTTTGGCCTTATGATATATAAGTAA-C-AGTAA-T

               1251   -   1301
RU03680        --> TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTATTGCTTTTTTTG-TT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................................................
RH44BK111      <-- ..................................................
RH47BP61       <-- ..................................................
ET0097870      <-- ..................................................
CT0077740      <-- ..................................................
ET0082514      <-- ..................................................
CT0094807      <-- ..................................................
CT0005343      <-- ..................................................
ET0026765      <-- ..................................................
CT0057540      <-- ..................................................
ET0084005      <-- ..................................................
CT0074930      <-- ..................................................
ET0138698      <-- TTCGAC............................................
CT0029416      <-- TTCGAC-ATGAA......................................
ET0002395      <-- TTCGAC-ATGAAaaaa..................................
ET0002827      <-- TTCGAC-ATGAAaaaa..................................
ET0002939      <-- TTCGAC-ATGAAaaaa..................................
ET0138175      <-- TTCGAC............................................
ET0003034      <-- TTCGACCATGAAaaa...................................
ET0009791      <-- ..................................................
ET0016120      <-- TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTATTGCTTTTTTTGGTT
ET0013513      <-- TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTATTGCTTTTTTTG-TT
ET0028957      <-- TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTATTGCTTTTTTTG-TT
ET0036893      <-- TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTATTGCTTTTTTTG-TT
ET0121129      <-- TTCGAC-ATGAACAGTGGCTTCCAATGGAAATTTAatttgtctttttttt
CT0124316      --> ..................................................
CT0124615      --> ..................................................
CT0126177      --> ..................................................
CT0134618      --> ..................................................
CT0053389      --> ..................................................
ET0118392      --> ..................................................
ET0118011      --> ..................................................
ET0016326      --> ..................................................
CT0004238      --> ..................................................
CT0035515      --> TTCGA.............................................
CT0082648      --> TTCGAC-ATG........................................

               1301   -   1351
RU03680        --> CTTCT-CTTACCAAAAAG
                   ~~~~~~~~~~~~~~~~~~
CT0112511      <-- ..................
RH44BK111      <-- ..................
RH47BP61       <-- ..................
ET0097870      <-- ..................
CT0077740      <-- ..................
ET0082514      <-- ..................
CT0094807      <-- ..................
CT0005343      <-- ..................
ET0026765      <-- ..................
CT0057540      <-- ..................
ET0084005      <-- ..................
CT0074930      <-- ..................
ET0138698      <-- ..................
CT0029416      <-- ..................
ET0002395      <-- ..................
ET0002827      <-- ..................
ET0002939      <-- ..................
ET0138175      <-- ..................
ET0003034      <-- ..................
ET0009791      <-- ..................
ET0016120      <-- CTTCT-CTTACCAAAAAG
ET0013513      <-- CTTCT-CTTAAAAAAAAa
ET0028957      <-- CTTCT-CTTAAAAAAAAa
ET0036893      <-- CTTCTACTTAAAAAAAAa
ET0121129      <-- gttttct...........
CT0124316      --> ..................
CT0124615      --> ..................
CT0126177      --> ..................
CT0134618      --> ..................
CT0053389      --> ..................
ET0118392      --> ..................
ET0118011      --> ..................
ET0016326      --> ..................
CT0004238      --> ..................
CT0035515      --> ..................
CT0082648      --> ..................