Rose Transcriptome Database

               1      -     51
RU03721        --> TTTTTTTTTGTAAACATTAAGTAACGAATAGTGATTACTGATTATTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> TTTTTTTTTGTAAACATTAAGTAACGAATAGTGATTACTGATTATTTGAT
CT0006929      --> ........................CGAATAGTGATTACTGATTATTTGAT
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               51     -    101
RU03721        --> TATTTCCTTATACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ....ttttttTACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
ET0018367      <-- ..........................TTGCTTCCATTTA-TTTTCTCTGG
CT0027785      <-- ...........................TGCTTCCATTTA-TTTTCTCTGG
ET0109695      <-- ........................tttaGCTTCCATTTAGTTTTCTCTGG
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> TATTTCCTTATACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
CT0006929      --> TATTTCCTTATACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
CT0080213      --> .ttttttTTATACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
CT0082495      --> .ttttttTTATACAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
CT0040257      --> ......ttttttCAAAGATAAAACATTTGCTTCCATTTA-TTTTCTCTGG
ET0026242      --> ..........................TTGCTTCCATTTA-TTTTCTCTGG
ET0027803      --> ...........................TGCTTCCATTTA-TTTTCTCTGG
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               101    -    151
RU03721        --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGTGTAATTGTTT-AAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- TAA-CCCAGGTCAGTATTT-AGAAGCAACAGG--TAATTGTTTTAAAACA
ET0018367      <-- TAA-CCCAGGTCAGTATTTTAGAAGCAACAGGTGTAATTGTTT-AAAACA
CT0027785      <-- TAA-CCCAGGTCAGTATTT-AGAAGCAACAGG--TAATTGTTT-AAAACA
ET0109695      <-- TAAACCCAGGTCAGTATTT-AGAAGCAACAGG--TAATTGTTT-AAAACA
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGT--AATTGTTT-AAAACA
CT0006929      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGTaatt.............
CT0080213      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGTGTAATTGTTT-AAAACA
CT0082495      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGTGTAATTGTTT-AAAACA
CT0040257      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGT--AATTGTTT-AAAACA
ET0026242      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGT--AATTGTTT-AAAACA
ET0027803      --> TAA-CCCAGGTCAGTATTT-AGAAGCAACAGGT--AATTGTTT-AAAACA
CT0003606      --> gttccatacagttGTATTT-AGAAGCAACAGGTGTAATTGTTT-AAAACA
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               151    -    201
RU03721        --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0018367      <-- CAACTGTATGGAACTG..................................
CT0027785      <-- CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0109695      <-- CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0058143      <-- .........GGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0087729      <-- ...........AACTGAACCAACACAGAATACACTCATAATAAAACTAAG
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> CAACTGTATGGAACTGAACCAACACA........................
CT0006929      --> ..................................................
CT0080213      --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
CT0082495      --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
CT0040257      --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0026242      --> CAACTGTATGGAACTGAACCAACACAGAATACA.................
ET0027803      --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
CT0003606      --> CAACTGTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
CT0091386      --> .....GTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
CT0092723      --> .....GTATGGAACTGAACCAACACAGAATACACTCATAATAAAACTA-G
ET0068293      --> ...................................CATAATAAAACTA-G
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               201    -    251
RU03721        --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- GCAGCAGAGCATGCCACTAGGTTA..........................
ET0018367      <-- ..................................................
CT0027785      <-- GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
ET0109695      <-- GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
ET0058143      <-- GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAAATGCCAA
ET0087729      <-- GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAAATGCCAA
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAA............
CT0082495      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAA............
CT0040257      --> GCAGCAGAGCATG.....................................
ET0026242      --> ..................................................
ET0027803      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
CT0003606      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TG....
CT0091386      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
CT0092723      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
ET0068293      --> GCAGCAGAGCATGCCACTAGGTTATACCACACTTAAAACCAAA-TGCCAA
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               251    -    301
RU03721        --> GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- caga..............................................
ET0109695      <-- GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
ET0058143      <-- GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
ET0087729      <-- GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
CT0003606      --> ..................................................
CT0091386      --> GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
CT0092723      --> GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
ET0068293      --> GGCATCTATATAGTTCAGTTGTAACATGAAACTCGGACAAATCCACATAA
ET0011135      --> ..............................ACTCGGACAAATCCACATAA
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               301    -    351
RU03721        --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- CAGCAGCAGGTGATAGATACC-ACAGAG......................
ET0058143      <-- CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
ET0087729      <-- CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> CAG...............................................
CT0003606      --> ..................................................
CT0091386      --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
CT0092723      --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
ET0068293      --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
ET0011135      --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
CT0000047      --> CAGCAGCAGGTGATAGATACC-ACAGAGGAACAGTAGATAATACATATAT
CT0070803      --> ...............GATACCGACAGAGGAACAGTAGATAATACATATAT
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               351    -    401
RU03721        --> ATAGCTTAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTTCCGAGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ATAGCTTAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTTC........
ET0087729      <-- ATAGCTTAAAGGAGCCC-ATCCTCA-TCATCCCGCGACTTTtc.......
ET0065547      <-- ....CTTAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTTCCGAGAATA
ET0067556      <-- ....CTTAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTTCCGAGAATA
ET0098490      <-- .........AGGAGCCC-ATCCTCAATCATCCCGCGACTTTCCGAGAATA
RH10F18        <-- ............................ATCCCGCGACTTTCCGAGAATA
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ATAGCTTAAAGGAGCCC-ATCCTCAATCATCCCGCGta............
CT0092723      --> ATAGCTTAAAGGAGCCCCATCCTCAATCATCCC.................
ET0068293      --> ATAGCTTAAAGGAGCCCCATCCTCAATCATCCCGCGACTTTCCGAGAATA
ET0011135      --> ATAGCTTAAAGGAGCCC-ATCCTCGATCATCCCGCGACTTTCCGAGAATA
CT0000047      --> ATAGCTTAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTc.........
CT0070803      --> ATAGCTTAAAGG......................................
ET0050531      --> ...cttaAAAGGAGCCC-ATCCTCAATCATCCCGCGACTTTCCGAGAATA
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               401    -    451
RU03721        --> GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
ET0067556      <-- GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
ET0098490      <-- GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
RH10F18        <-- GGATCTGNCAGGTTGGATCTCT-GAACAGGGCCTGAGATACAAGTTTCCA
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> GGATCTGCCAGGTTGGA.................................
ET0011135      --> GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> GGATCTGCCAGGTTGGATCTCTTGAACAGG-CCTGAGATACAAGTTTCCA
CT0050406      --> ....................CTTGAACAGG-CCTGAGATACAAGTTTCCA
CT0077112      --> ....................CTTGAACAGG-CCTGAGATACAAGTTTCCA
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               451    -    501
RU03721        --> GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
ET0067556      <-- GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
ET0098490      <-- GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
RH10F18        <-- GTCTCGCCTAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
CT0050406      --> GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
CT0077112      --> GTCTCGCCAAACCACTGGGCTCCAGCTTTCATGGCAGGTGGACGCAGCGT
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               501    -    551
RU03721        --> TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
ET0067556      <-- TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
ET0098490      <-- TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
RH10F18        <-- TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
CT0008124      <-- ...............................................TTC
ET0057710      <-- .................................................C
ET0147557      <-- .................................................C
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> TTCGCCCCACAGt.....................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> TT-GCCCAACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
CT0050406      --> TT-GCCCCACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
CT0077112      --> TT-GCCCCACAGATTGCCTGCGGGAACCAATTGTCATGTTTGATAGCTTC
ET0044790      --> ...................................ATGTTTGATAGCTTC
ET0048527      --> ...................................ATGTTTGATAGCTTC
ET0050499      --> ...................................ATGTTTGATAGCTTC
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               551    -    601
RU03721        --> TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTac....
ET0067556      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTC.....
ET0098490      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTC.....
RH10F18        <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
CT0008124      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
ET0057710      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
ET0147557      <-- TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> TCAGATGCATCTAGAAAACACCACGTCGGAACCCGTGCCTTGT.......
CT0050406      --> TCAGATGCATCT-G-AAACACCACGT-GG.....................
CT0077112      --> TCAGATGCATCT-G-AAACACCACGT-GG.....................
ET0044790      --> TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
ET0048527      --> TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
ET0050499      --> TCAGATGCATCT-G-AAACACCACGT-GGAACCCGTGCCTTGTTCACAGA
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               601    -    651
RU03721        --> GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
CT0008124      <-- GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
ET0057710      <-- GGTAAGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTCGCAGAGC
ET0147557      <-- GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTCGCAGAGC
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
ET0048527      --> GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
ET0050499      --> GGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
CT0013662      --> tGTAGGACTGCTCTTTCCAGGGGGCCGATATTTTTGTTGATTGGCAGAGC
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               651    -    701
RU03721        --> TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
CT0008124      <-- TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
ET0057710      <-- TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
ET0147557      <-- TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
ET0048527      --> TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
ET0050499      --> TCTTCAAGTATTTATCATTCTTTTTAGCATCCTGGTTAGCCATATCCAAT
CT0013662      --> TCTTCAAGTATTTATCATTCTTTTTAGCATCCcg................
CT0020793      --> .................tttTTTTTAGCATCCTGGTTAGCCATATCCAAT
CT0079090      --> ...................................TTAGCCATATCCAAT
CT0072532      --> ....................................TAGCCATATCCAAT
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               701    -    751
RU03721        --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- TTGCGCTGC------ACACCTATAGAAGCATGCAACTTTGGAGAAGGAAA
CT0008124      <-- TTGCGCTGCACACCCGTG................................
ET0057710      <-- TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGA......
ET0147557      <-- TTGCGCTGC------ACACCTATAGAAGCATGCAACTTTGGAGAAGGAAA
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
ET0048527      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
ET0050499      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
CT0013662      --> ..................................................
CT0020793      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
CT0079090      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
CT0072532      --> TTGCGCTGCACACCCGTGCCTATAGAAGCATGCAACTTTGGAGAAGGAAA
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               751    -    801
RU03721        --> ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAGCA
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAGCA
ET0101815      <-- .........................AAAGT-CCCAGAGACCTTTCTAGCA
ET0131726      <-- .........................AAAGT-CCCAGAGACCTTTCTAGCA
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ACTGCTAGTGAG......................................
ET0048527      --> ACTGCTAGTGAGCTTTGCACg.............................
ET0050499      --> ACTGCTAGTGAGCTTTGCACg.............................
CT0013662      --> ..................................................
CT0020793      --> ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAG..
CT0079090      --> ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAGCA
CT0072532      --> ACTGCTAGTGAGCTTTGCACTGGATAAAGT-CCCAGAGACCTTTCTAGCA
ET0112342      --> .....................GGATAAAGT-CCCAGAGACCTTTCTAGCA
ET0102743      --> ......cttttgtctacttggtatTAAAGTTCCCAGAGACCTTTCTAGCA
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               801    -    851
RU03721        --> GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAA
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- GATTGCTGCTCCAAACGCTCCCCTTGTTCCAGC.................
ET0101815      <-- GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
ET0131726      <-- GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
CT0072532      --> GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
ET0112342      --> GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
ET0102743      --> GATTGCTGCTCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
ET0072066      --> .........TCCAA-CGCTCCCCTTGTTCCAGCAAATGGTGGTGTCCTAG
ET0034841      --> .........................GTTCCAGCAAATGGTGGTGTCCTAG
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               851    -    901
RU03721        --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0131726      <-- CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
CT0072532      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0112342      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0102743      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0072066      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0034841      --> CAGTCGTTAGTTTGGGACGAAGGGATGGTGGAACATAATAGCAACTCTGG
ET0039277      --> ..................................ATAATAGCAACTCTGG
ET0039524      --> ..................................ATAATAGCAACTCTGG
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               901    -    951
RU03721        --> AAGAAAGGGTGCTGGGAGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0131726      <-- AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
CT0016008      <-- ...............GAGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> AAGAAAGGGTGCTGG-AGGGCCT...........................
CT0072532      --> AA................................................
ET0112342      --> AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0102743      --> AAGAAAGGGTGCTGGGAGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGG-T
ET0072066      --> AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0034841      --> AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0039277      --> AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0039524      --> AAGAAAGGGTGCTGG-AGGGCCTCTGCAGCTGTTGGCCTCTTGGAAGGGT
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               951    -   1001
RU03721        --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCA.........
ET0131726      <-- CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGA.
CT0016008      <-- CACAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
ET0102743      --> CCCAAGAACAA-GTGATCTA..............................
ET0072066      --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
ET0034841      --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
ET0039277      --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
ET0039524      --> CCCAAGAACAAAGTGATCTAATGAGGCTAATTGCATGATCACTAGCTGAT
ET0058935      --> ............................................GCTGAT
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1001   -   1051
RU03721        --> CGGAATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- -GGAATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- CGGA-TCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> CGGA..............................................
ET0102743      --> ..................................................
ET0072066      --> -GGAATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
ET0034841      --> CGGA-TCAGAGAAGAAAGATGAACACCAGCAAACTGTAGGAAATTGGTAG
ET0039277      --> CG-AATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
ET0039524      --> CG-AATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
ET0058935      --> CG-AATCAGAGAAGAAAGATGAACACCAGCAAACTGT-GGAAATTGGTAG
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1051   -   1101
RU03721        --> TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
CT0102425      <-- ...............................CCCATGAATCCTTGTTTGG
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> TTG...............................................
ET0034841      --> TTGATAT...........................................
ET0039277      --> TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
ET0039524      --> TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
ET0058935      --> TTGATATCCCTTGCAAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
CT0031530      --> ..............AAGACGAAGCCCATCTGCCCATGAATCCTTGTTTGG
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1101   -   1151
RU03721        --> AGTGCCAATCACACTGCAAATTTTGTGTATCTCATCTGCTTCACTAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- AGTGCCAATCACACTGCAAATTTTGTGTATCTCATCTGCTTCACTAACAC
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- AGTGCC............................................
CT0102425      <-- AGTGCCAATCACACTGCAAATTTTGTGTATCTCATCTGCTTCACTAACAC
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> AGTGCCAATCAC......................................
ET0039524      --> AGTGCCAATCAC......................................
ET0058935      --> AGTGCCAATCACACTGCAAATTTTGTGTATCTCATCTGCTTCACTAACAC
CT0031530      --> AGTGCCAATCACACTGCAAATTTTGTGTATCTCATCTGCTTCACTAACAC
ET0030224      --> ..................AATTTTGTGTATCTCATCTGCTTCACTAACAC
CT0089917      --> .................................ATCTGCTTCACTAACAC
CT0092150      --> ............................................TAACAC
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1151   -   1201
RU03721        --> CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> CCGGAAAAAGAGGGCGAAGACTAAACAACT....................
CT0031530      --> CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
ET0030224      --> CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
CT0089917      --> CCGGAAAAAGAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
CT0092150      --> CCGGAAAA-GAGGGCGAAGACTAAACAACTCGGCCATGATTGCACCCATC
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1201   -   1251
RU03721        --> GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGT.....
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
ET0009571      <-- .......TATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAG......
ET0030224      --> GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
CT0089917      --> GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
CT0092150      --> GCCCACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
CT0137273      --> ....ACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
CT0137645      --> ....ACATATCAACTTTAGAGCTATACAGGTATGACTGAAGCAGTACTTC
ET0098713      --> ......tgtcgagcgtctGAGCTATACAGGTATGACTGAAGCAGTACTTC
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1251   -   1301
RU03721        --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
ET0009571      <-- AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
CT0034658      <-- .....................CGACACATATTCAGTGTACGGTGGTTGGG
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> AGGAGCTCGGTACCAGCGTGTCGACACATATTCAGTGT............
CT0089917      --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
CT0092150      --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
CT0137273      --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
CT0137645      --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
ET0098713      --> AGGAGCTCGGTACCAGCGTGTCGACACGTATTCAGTGTACGGTGGTTGGG
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1301   -   1351
RU03721        --> ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ATTCAATTTCCCGAGCAAGAC.............................
ET0009571      <-- ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
CT0034658      <-- ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ATTCA.............................................
CT0092150      --> ATTCAATTTCCCGAGCAAGACCAAAGTCA.....................
CT0137273      --> ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
CT0137645      --> ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
ET0098713      --> ATTCAATTTCCCGAGCAAGACCAAAGTCAGCAATTTTGATTAAATCTTTG
ET0094563      --> .............................................CTTTG
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1351   -   1401
RU03721        --> GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- GTAACCAAC.........................................
CT0034658      <-- GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
CT0137645      --> GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
ET0098713      --> GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
ET0094563      --> GTAACCAACAAGTTCTCTGGCTTAAGGTCACGATGAAAATATCCACGCTG
CT0106825      --> .................TGGCTTAAGGTCACGATGAAAATATCCACGCTG
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1401   -   1451
RU03721        --> ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAACACCAATTTCTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAACACCAATTTCTGACT
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAAC-CCAATTTCTGACT
CT0137645      --> ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAAC-CCAATTTCTGACT
ET0098713      --> ATGCATGTAAGCAAGGCCTTAGAAAAACTTGAAAACACCAATTTC.....
ET0094563      --> ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAACACCAATTTCTGACT
CT0106825      --> ATGCATGTAAGCAAGGCCTT-GAAAAACTTGAAAACACCAATTTCTGACT
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1451   -   1501
RU03721        --> TGCGCTTCAGGGAAAA-GCTTTT-CCTTATCTTTCATAAGCTGGTACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- TGCGCTTCAGGGAAAA-GCTTTT-CCTTATCTTTCATAAGCTGGTACAGA
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> TGCGCTTCAGGGAAAAAGCTTTTTCCTTATCTTTCATAAGCTGGTACAGA
CT0137645      --> TGCGCTTCAGGGAAAAAGCTTTTTCCTTATCTTTCATAAGCTGGTACAGA
ET0098713      --> ..................................................
ET0094563      --> TGCGCTTCAGGGAAAA-GCTTTT-CCTTATCTTTCATAAGCTGGTACAGA
CT0106825      --> TGCGCTTCAGGGAAAA-GCTTTT-CCTTATCTTTCATAAGCTGGTACAGA
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1501   -   1551
RU03721        --> CTACACTCCATAT--TCAAACACAAAGTACAAGATGTCATGTTCTCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................  Control
ET0018367      <-- ..................................................  Ethylene
CT0027785      <-- ..................................................  Control
ET0109695      <-- ..................................................  Ethylene
ET0058143      <-- ..................................................  Ethylene
ET0087729      <-- ..................................................  Ethylene
ET0065547      <-- ..................................................  Ethylene
ET0067556      <-- ..................................................  Ethylene
ET0098490      <-- ..................................................  Ethylene
RH10F18        <-- ..................................................  WaterDS
CT0008124      <-- ..................................................  Control
ET0057710      <-- ..................................................  Ethylene
ET0147557      <-- ..................................................  Ethylene
ET0101815      <-- ..................................................  Ethylene
ET0131726      <-- ..................................................  Ethylene
CT0016008      <-- ..................................................  Control
CT0102425      <-- ..................................................  Control
ET0009571      <-- ..................................................  Ethylene
CT0034658      <-- CTACACTCCATATATTCAAACACAAAGTA.....................  Control
ET0018665      <-- ...........AT--TCAAACACAAAGTACAAGATGTCATGTTCTCTGAT  Ethylene
RH39BD80       <-- ............................ACAAGATGTCATGTCCTCTGAT  WaterDS
CT0040066      <-- ..................................................  Control
CT0044362      <-- ..................................................  Control
ET0017459      <-- ..................................................  Ethylene
ET0049231      <-- ..................................................  Ethylene
CT0129688      --> ..................................................  Control
CT0006929      --> ..................................................  Control
CT0080213      --> ..................................................  Control
CT0082495      --> ..................................................  Control
CT0040257      --> ..................................................  Control
ET0026242      --> ..................................................  Ethylene
ET0027803      --> ..................................................  Ethylene
CT0003606      --> ..................................................  Control
CT0091386      --> ..................................................  Control
CT0092723      --> ..................................................  Control
ET0068293      --> ..................................................  Ethylene
ET0011135      --> ..................................................  Ethylene
CT0000047      --> ..................................................  Control
CT0070803      --> ..................................................  Control
ET0050531      --> ..................................................  Ethylene
CT0050406      --> ..................................................  Control
CT0077112      --> ..................................................  Control
ET0044790      --> ..................................................  Ethylene
ET0048527      --> ..................................................  Ethylene
ET0050499      --> ..................................................  Ethylene
CT0013662      --> ..................................................  Control
CT0020793      --> ..................................................  Control
CT0079090      --> ..................................................  Control
CT0072532      --> ..................................................  Control
ET0112342      --> ..................................................  Ethylene
ET0102743      --> ..................................................  Ethylene
ET0072066      --> ..................................................  Ethylene
ET0034841      --> ..................................................  Ethylene
ET0039277      --> ..................................................  Ethylene
ET0039524      --> ..................................................  Ethylene
ET0058935      --> ..................................................  Ethylene
CT0031530      --> ..................................................  Control
ET0030224      --> ..................................................  Ethylene
CT0089917      --> ..................................................  Control
CT0092150      --> ..................................................  Control
CT0137273      --> CTACACTCCATATattcaaaca............................  Control
CT0137645      --> CTACACTCCATATattcaaaca............................  Control
ET0098713      --> ..................................................  Ethylene
ET0094563      --> CTACACTCCATAT--TCAAACACAAAGTACAAGATGTCATGT........  Ethylene
CT0106825      --> CTACACTCCATATATTCAAACACAAAGTACAAGATGTCATGTTCTCTGAT  Control
CT0046921      --> .................AAACACAAAGTACAAGATGTCATGTTCTCTGAT  Control
ET0033649      --> ..................................................  Ethylene
CT0009043      --> ..................................................  Control
CT0028293      --> ..................................................  Control
CT0059096      --> ..................................................  Control
CT0136627      --> ..................................................  Control

               1551   -   1601
RU03721        --> GACTTCCTTGAGCTTCACAA-TATTTGGATGATTCATTCTACGCAATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- GACTTCCTTGAGCTTCACAA-TATTTGGATGATTCATTCTACGCAATGAC
RH39BD80       <-- GACTTCCTTGAGCTTCACAA-TATTTGGATGATTCATTCTACGCAATGAC
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> GACTTCCTTGAGCTTCACAA-TATTTGGATGATTCATTCTACGCAATGAC
CT0046921      --> GACTTCCTTGAGCTTCACAA-TATTTGGATGATTCATTCTACGCAATGAC
ET0033649      --> ..............TCACAAGTATTTGGATGATTCATTCTACGCAATGAC
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1601   -   1651
RU03721        --> TTAACTTCTCGAAGACTAATGCACTCCTCCCATGAATAATATCTTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- TTAACTTCTCGAAGACTTATGCACTCCTCCCATGAATAATATCTTTTCTT
RH39BD80       <-- TTAACTTCTCGAAGACTTATGCACTCCTCCCATGAATAATATCTTTTCTT
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> TTta..............................................
CT0046921      --> TTAACTTCTCGAAGACTTATGCACTCCTCCCATGAATAATATCTTTTCTT
ET0033649      --> TTAACTTCTCGAAGACTAATGCACTCCTCCCATGAATAATATCTTTTCTT
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1651   -   1701
RU03721        --> CATTTTTTTGATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- CATTTTTTTGATTGCAACAACTTCA.........................
RH39BD80       <-- CATTTTTTTGATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
CT0040066      <-- ........gtATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
CT0044362      <-- ........gtATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> CATTTTTTTGATTGCAACAACTTCACCAGTCTGCTTATTA..........
ET0033649      --> CATTTTTTTGATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
CT0009043      --> .........GATTGCAACAACTTCACCAGTCTGCTTATTAATAGCACGCC
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1701   -   1751
RU03721        --> ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGTACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGT.....
CT0040066      <-- ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGTACCTC
CT0044362      <-- ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGTACCTC
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGTACCTC
CT0009043      --> ACACAGTTCCAAATGTTCCATCACCAACTTCCTTTATTAACTTGTACCTC
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1751   -   1801
RU03721        --> TCCATTCTTCCAGAGGAACTCAAAGCAGCTCTTTCTTTATTCAGTGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- TCCATTCTTCCAGAGGAACTCAAAGCAGCTCTTTCTTTATTCAGTGAAAG
CT0044362      <-- TCCATTCTTCCAGAGGAACTCAAAGCAGCTCTTTCTTTATTCAGTGAAAG
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> TCCATTCTTCCAGAGGAACTCAAAGCAGCTCTTTCTT.............
CT0009043      --> TCCATTCTTCCAGAGGAACTCAAAGCAGCTCTTTCTTTATTCAGTGAAAG
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               1801   -   1851
RU03721        --> CATAAAGACTCGCAAAAGATAAATGGCATTTATCTTCAGAAGATGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- CATAAAGACTCGCAAAAtgatccttaaaaaacactgtaag..........
CT0044362      <-- CATAAAGACTCGCAAAAtgatccttaaaaaacactgtaag..........
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> CATAAAGACTCGCAAAAGATAAATGGCATTTATCTTCAGAAG........
CT0028293      --> .....................AATGGCATTTATCTTCAGAAGATGATCCT
CT0059096      --> .....................AATGGCATTTATCTTCAGAAGATGATCCT
CT0136627      --> ..................................................

               1851   -   1901
RU03721        --> TAAAAAACACTGTAAGATATAAACAACTGCCCTGCTGGTCCCGCTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> TAAAAAACACTGTAAGATATAAACAACTGCCCTGCTGGTCCCGCTCAATC
CT0059096      --> TAAAAAACACTGTAAGATATAAACAACTGCCCTGCTGGTCCCGCTCAATC
CT0136627      --> ..................................................

               1901   -   1951
RU03721        --> CAACATTAATTTTCTGAGGAGATATGCAGGAGCACAAAACCAGAAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> CAACATTAATTTTCTGAGGAGATATGCAGGAGCACAAAACCAGAAATCTT
CT0059096      --> CAACATTAATTTTCTGAGGAGATATGCAGGAGCACAAAACCAGAAATCTT
CT0136627      --> ..................................................

               1951   -   2001
RU03721        --> ATGGTGGATGGGCTGCACAGCCTTATTCATTACTAACTCCCCGTCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ATGGTGGATGGGCTGCACAGCCTTATTCATTACTAACTCCCCGTCTTCAA
CT0059096      --> ATGGTGGATGGGCTGCACAGCCTTATTCATTACTAACTCCCCGTCTTCAA
CT0136627      --> ..................AGCCTTATTCATTACTAACTCCCCGTCTTCAA

               2001   -   2051
RU03721        --> GACTACAAAATGGCATGGATGGCAAGAAAGGACAAGTACCACAGGACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> G.................................................
CT0059096      --> G.................................................
CT0136627      --> GACTACAAAATGGCATGGATGGCAAGAAAGGACAAGTACCACAGGACATA

               2051   -   2101
RU03721        --> TCGATACCAATTTAAAACCAGACCAGAGCGATTGGTACGG-CCAACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..............................ATTGGTACGG-CCAACAAGA
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> TCGATACCAATTTAAAACCAGACCAGAGCGATTGGTACGGGCCAACAAGA

               2101   -   2151
RU03721        --> TCAATTCCTAGCTCAAGACAGTG-CACCCAACTTTTATAAACTTAACTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- TCAATTCCTAGCTCAAGACAGTGTCACCCAACTTTTATAAACTTAACTAA
ET0049231      <-- ..................................................
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> TCAATTCCTAGCTCAAGACAGTGTCACCCAACTTTTATAAACTTAACTAA

               2151   -   2201
RU03721        --> TAGCTTCTCATCTATAGTTCTATACTAAGTAAACATCAGTGTGGAATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- TAGCTTCTCATCTATAGTTCTATACTAAGTAAACATCAGTGTGGAATTGA
ET0049231      <-- ............................................AATTGA
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> TAGCTTCTCATCTATAGTTCTATACTAAGTAAACATCAGTGTGGAATTGA

               2201   -   2251
RU03721        --> TATCTTGCTTCTCACAGTACCCATCAAGAGTAACAAGAAAATAATAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- TATCTTGCTTCTCACAGTACCCATCAAGAGTAACAAGAAA..........
ET0049231      <-- TATCTTGCTTCTCACAGTACCCATCAAGAGTAACAAGAAAATAATAGCTA
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> TATCTTGCTTCTCACAGTACCCATCAAGAGTAACAAGAAAATAATAGCTA

               2251   -   2301
RU03721        --> TCTAATAAACAGTCTGCACGGGCTTTGTTTGACGCAACTGATTATCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- TCTAATAAACAGTCTGCACGGGCTTTGTTTGACGCAACTGATTATCTAAT
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> TCTAATAAACAGTCTGCACGGGCTT.........................

               2301   -   2351
RU03721        --> ATTAACTCTGTAGAGATCTTCAGTCACAGATCAGCAGACTTCAGCCCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- ..................................................
ET0018367      <-- ..................................................
CT0027785      <-- ..................................................
ET0109695      <-- ..................................................
ET0058143      <-- ..................................................
ET0087729      <-- ..................................................
ET0065547      <-- ..................................................
ET0067556      <-- ..................................................
ET0098490      <-- ..................................................
RH10F18        <-- ..................................................
CT0008124      <-- ..................................................
ET0057710      <-- ..................................................
ET0147557      <-- ..................................................
ET0101815      <-- ..................................................
ET0131726      <-- ..................................................
CT0016008      <-- ..................................................
CT0102425      <-- ..................................................
ET0009571      <-- ..................................................
CT0034658      <-- ..................................................
ET0018665      <-- ..................................................
RH39BD80       <-- ..................................................
CT0040066      <-- ..................................................
CT0044362      <-- ..................................................
ET0017459      <-- ..................................................
ET0049231      <-- ATTAACTCTGTAGAGATCTTCAGTCACAGATCAGCAGACTTCAGCCCCCT
CT0129688      --> ..................................................
CT0006929      --> ..................................................
CT0080213      --> ..................................................
CT0082495      --> ..................................................
CT0040257      --> ..................................................
ET0026242      --> ..................................................
ET0027803      --> ..................................................
CT0003606      --> ..................................................
CT0091386      --> ..................................................
CT0092723      --> ..................................................
ET0068293      --> ..................................................
ET0011135      --> ..................................................
CT0000047      --> ..................................................
CT0070803      --> ..................................................
ET0050531      --> ..................................................
CT0050406      --> ..................................................
CT0077112      --> ..................................................
ET0044790      --> ..................................................
ET0048527      --> ..................................................
ET0050499      --> ..................................................
CT0013662      --> ..................................................
CT0020793      --> ..................................................
CT0079090      --> ..................................................
CT0072532      --> ..................................................
ET0112342      --> ..................................................
ET0102743      --> ..................................................
ET0072066      --> ..................................................
ET0034841      --> ..................................................
ET0039277      --> ..................................................
ET0039524      --> ..................................................
ET0058935      --> ..................................................
CT0031530      --> ..................................................
ET0030224      --> ..................................................
CT0089917      --> ..................................................
CT0092150      --> ..................................................
CT0137273      --> ..................................................
CT0137645      --> ..................................................
ET0098713      --> ..................................................
ET0094563      --> ..................................................
CT0106825      --> ..................................................
CT0046921      --> ..................................................
ET0033649      --> ..................................................
CT0009043      --> ..................................................
CT0028293      --> ..................................................
CT0059096      --> ..................................................
CT0136627      --> ..................................................

               2351   -   2401
RU03721        --> GAAGAAGTTTTCCCAGAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~
CT0044566      <-- .....................
ET0018367      <-- .....................
CT0027785      <-- .....................
ET0109695      <-- .....................
ET0058143      <-- .....................
ET0087729      <-- .....................
ET0065547      <-- .....................
ET0067556      <-- .....................
ET0098490      <-- .....................
RH10F18        <-- .....................
CT0008124      <-- .....................
ET0057710      <-- .....................
ET0147557      <-- .....................
ET0101815      <-- .....................
ET0131726      <-- .....................
CT0016008      <-- .....................
CT0102425      <-- .....................
ET0009571      <-- .....................
CT0034658      <-- .....................
ET0018665      <-- .....................
RH39BD80       <-- .....................
CT0040066      <-- .....................
CT0044362      <-- .....................
ET0017459      <-- .....................
ET0049231      <-- GAAGAAGTTTTCCCAGAAAAT
CT0129688      --> .....................
CT0006929      --> .....................
CT0080213      --> .....................
CT0082495      --> .....................
CT0040257      --> .....................
ET0026242      --> .....................
ET0027803      --> .....................
CT0003606      --> .....................
CT0091386      --> .....................
CT0092723      --> .....................
ET0068293      --> .....................
ET0011135      --> .....................
CT0000047      --> .....................
CT0070803      --> .....................
ET0050531      --> .....................
CT0050406      --> .....................
CT0077112      --> .....................
ET0044790      --> .....................
ET0048527      --> .....................
ET0050499      --> .....................
CT0013662      --> .....................
CT0020793      --> .....................
CT0079090      --> .....................
CT0072532      --> .....................
ET0112342      --> .....................
ET0102743      --> .....................
ET0072066      --> .....................
ET0034841      --> .....................
ET0039277      --> .....................
ET0039524      --> .....................
ET0058935      --> .....................
CT0031530      --> .....................
ET0030224      --> .....................
CT0089917      --> .....................
CT0092150      --> .....................
CT0137273      --> .....................
CT0137645      --> .....................
ET0098713      --> .....................
ET0094563      --> .....................
CT0106825      --> .....................
CT0046921      --> .....................
ET0033649      --> .....................
CT0009043      --> .....................
CT0028293      --> .....................
CT0059096      --> .....................
CT0136627      --> .....................